Exploring Weak Ligand–Protein Interactions by Long‐Lived NMR States: Improved Contrast in Fragment‐Based Drug Screening

Ligands that have an affinity for protein targets can be screened very effectively by exploiting favorable properties of long‐lived states (LLS) in NMR spectroscopy. In this work, we describe the use of LLS for competitive binding experiments to measure accurate dissociation constants of fragments that bind weakly to the ATP binding site of the N‐terminal ATPase domain of heat shock protein 90 (Hsp90), a therapeutic target for cancer treatment. The LLS approach allows one to characterize ligands with an exceptionally wide range of affinities, since it can be used for ligand concentrations [L] that are several orders of magnitude smaller than the dissociation constants K_D. This property makes the LLS method particularly attractive for the initial steps of fragment‐based drug screening, where small molecular fragments that bind weakly to a target protein must be identified, which is a difficult task for many other biophysical methods.     

Enantioselective Synthesis of (−)‐Halenaquinone

The efficient, 12–14 step (LLS) total synthesis of (?)‐halenaquinone has been achieved. Key steps in the synthetic sequence include: (a) proline sulfonamide‐catalyzed, Yamada–Otani reaction to establish the C6 all‐carbon quaternary stereocenter, (b) multiple, novel palladium‐mediated oxidative cyclizations to introduce the furan moiety, and (c) oxidative Bergman cyclization to form the final quinone ring.     

Asymmetric Total Synthesis of the Complex Polycyclic Xanthone FD‐594

A highly convergent approach was developed to achieve the first asymmetric and scalable total synthesis of FD‐594, a complex polycyclic xanthone natural product from Streptomyces sp. TA‐0256, in a longest linear sequence (LLS) of 20 steps. The trans‐9,10‐dihydrophenanthrene‐9,10‐diol fragment (B‐C‐D ring) was generated through a new strategy involving asymmetric dihydroxylation followed by Cu‐mediated oxidative cyclization. Late‐stage stereoselective glycosylation assembled the angular hexacyclic framework with a β‐linked 2,6‐dideoxy trisaccharide fragment.     

Long‐lived states in an intrinsically disordered protein domain

Long‐lived states (LLS) are relaxation‐favored spin population distributions of J‐coupled magnetic nuclei. LLS were measured, along with classical ¹H and ¹⁵N relaxation rate constants, in amino acids of the N‐terminal Unique domain of the c‐Src kinase, which is disordered in vitro under physiological conditions. The relaxation rates of LLS can probe motions and interactions in biomolecules. LLS of the aliphatic protons of glycines, with lifetimes approximately four times longer than their spin–lattice relaxation times, are reported for the first time in an intrinsically disordered protein domain. LLS relaxation experiments were integrated with 2D spectroscopy methods, further adapting them for studies on proteins. Copyright © 2013 John Wiley & Sons, Ltd.     

Long‐Lived States of Magnetically Equivalent Spins Populated by Dissolution‐DNP and Revealed by Enzymatic Reactions

Hyperpolarization by dissolution dynamic nuclear polarization (D ‐DNP) offers a way of enhancing NMR signals by up to five orders of magnitude in metabolites and other small molecules. Nevertheless, the lifetime of hyperpolarization is inexorably limited, as it decays toward thermal equilibrium with the nuclear spin‐lattice relaxation time. This lifetime can be extended by storing the hyperpolarization in the form of long‐lived states (LLS) that are immune to most dominant relaxation mechanisms. Levitt and co‐workers have shown how LLS can be prepared for a pair of inequivalent spins by D ‐DNP. Here, we demonstrate that this approach can also be applied to magnetically equivalent pairs of spins such as the two protons of fumarate, which can have very long LLS lifetimes. As in the case of para‐hydrogen, these hyperpolarized equivalent LLS (HELLS) are not magnetically active. However, a chemical reaction such as the enzymatic conversion of fumarate into malate can break the magnetic equivalence and reveal intense NMR signals.     

Total synthesis of (−)-penicimutanin a and related congeners

The first total synthesis of penicimutanin A (1) was achieved within 10 steps (LLS). Key innovations in this synthesis consist of (1) a highly efficient electro-oxidative dearomatization; (2) an unprecedented bisoxirane-directed intermolecular aldol reaction from the sterically hindered face of the ketone and (3) the diastereoselective one-step Meerwein–Eschenmoser–Claisen rearrangement enabling the construction of vicinal quaternary stereocenters. Related family members e.g. penicimutanolone (3) and penicimutatin (5) have also been synthesized alongside, elucidating their absolute configurations, hence the absolute configuration of 1.

The first total synthesis of penicimutanin A (1) was achieved within 10 steps (LLS).     

Synthesis and self‐assembly of poly(styrene)‐b‐poly(N‐vinylpyrrolidone) amphiphilic diblock copolymers made via a combined ATRP and MADIX approach

Amphiphilic diblock copolymers of polystyrene (PS) and poly(N‐vinylpyrrolidone) (PNVP) were prepared by a combination of ATRP and MADIX. Well‐defined PS with bromine end group was synthesized by ATRP in bulk at 110 °C using (1‐bromoethyl) benzene as an initiator. The Br‐ end group was then converted to xanthate as verified by ¹H NMR spectroscopy, elemental analysis, and UV‐spectroscopy. PS‐b‐PNVP copolymers were produced by MADIX of NVP in bulk at 60 °C using PS‐xanthate as a macro‐chain transfer agent and the kinetics of polymerization were investigated. The structures of PS‐b‐PNVP were characterized using GPC and ¹H NMR. Amphiphilic PS‐b‐PNVP could form spherical micelles with PS cores and PNVP shells in aqueous solution as confirmed by ¹H NMR and laser light scattering (LLS). The values of critical micelle concentration of PS‐b‐PNVP and the average aggregation number of PS‐b‐PNVP in the micelles were measured using pyrene as a probe and static LLS, respectively. The aggregation number increases concomitantly with temperature (10–50 °C), but the hydrodynamic radius of the micelles remains almost constant over the same temperature range, which may indicate shell dehydration at a higher temperature. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 5604–5615, 2008     

Scalings of fluorine‐containing polyimides in cyclopentanone

Eight 2,2′‐bis(3,4‐dicarboxyphenyl) hexafluoropropane dianhydride‐4,4′‐diamino‐3,3′‐dimethylbiphenyl (6FDA‐OTOL) fractions and seven 2,2′‐bis[4‐(3,4‐dicarboxyphenoxy) phenyl] propane dianhydride‐4,4′‐diamino‐3,3′‐dimethylbiphenyl (BISADA‐OTOL) fractions in cyclopentanone at 30 °C were characterized by a combination of viscometry and static and dynamic laser light scattering (LLS). In static LLS, the angular dependence of the absolute scattered intensity led to the weight‐average molar mass (M_w), the z‐average root mean square radius of gyration, and the second virial coefficient. In dynamic LLS, the Laplace inversion of each measured intensity–intensity time correlation function resulted in a corresponding translational diffusion coefficient distribution [G(D)]. The scalings of 〈D〉 (cm²/s) = 8.13 × 10⁻⁵ M_w^−0.47 and [η] (dL/g) = 2.36 × 10⁻³ M_w^0.54 for 6FDA‐OTOL and 〈D〉 (cm²/s) = 3.02 × 10⁻⁴ M_w^−0.60 and [η] (dL/g) = 2.32 × 10⁻³ M_w^0.53 for BISADA‐OTOL were established. With these scalings, we successfully converted each G(D) value into a corresponding molar mass distribution. At 30 °C, cyclopentanone is a good solvent for BISADA‐OTOL but a poor solvent for 6FDA‐OTOL; this can be attributed to an ether linkage in BISADA‐OTOL. Therefore, BISADA‐OTOL has a more extended chain conformation than 6FDA‐OTOL in cyclopentanone. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 2077–2080, 2000     

Taguchi Optimization for Combustion Synthesis of Aluminum Oxide Nano-particles

Nano-structured aluminum oxide powders were prepared by a combustion synthesis method utilizing serine as a new fuel. The product was sonicated to obtain nano powders. A Taguchi L-4 statistical design of combustion synthesis was utilized to optimize the production of γ-alumina powder. The product was characterized by XRD, BET, SEM, EDX and LLS. Nano crystalline γ-alumina with crystal sizes between 4.26 and 5.47 nm and α-Al2O3 powders with crystal sizes 24.51 and 28.62 nm were obtained by the combustion synthesis. The specific surface area was measured by a BET method to be 75.21 m2/g. The average particle size after sonication of product, observed by LLS, was 79.32 nm.     

Spontaneous Self‐Assembly of γ‐Cyclodextrins in Dilute Solutions with Tunable Sizes and Thermodynamic Stability

The behavior in dilute solution of phosphate‐functionalized γ‐cyclodextrin macroanions with eight charges on the rim was explored. The hydrophilic macroions in mixed solvents show strong attraction between each other, mediated by the counterions, and consequently self‐assemble into blackberry‐type hollow spherical structures. Time‐resolved laser light scattering (LLS) measurements at high temperature ruled out the possibility of hydrogen bonding as the main driving force in the self‐assembly and indicated the good thermodynamic stability of assemblies regulated by the charge. The transition from single macroions to blackberries can be tuned by adjusting the content of organic solvent. The sizes of blackberries vary with the charge density of γ‐cyclodextrin by adjusting pH. It is the first report that pure cyclodextrins can generate supramolecular structures by themselves in dilute solution. The unique solution behavior of macroions provides a new opportunity to assemble cyclodextrin into functional materials and devices.     

Surfactant‐free synthesis of amphiphilic copolymer of poly(styrene‐co‐acrylamide) in aqueous emulsion with the assistance of ultrasound

The hydrophilic monomer acrylamide (AM) and hydrophobic monomer styrene (St) have been directly copolymerized in a surfactant‐free aqueous emulsion with the assistance of powerful ultrasound. Fourier Transform Infrared spectrocopy (FT‐IR), nuclear magnetic resonance (NMR), and differential scanning calorimetry (DSC) measurements revealed that copolymers of AM and St were obtained. Elemental analysis was used to calculate the composition of the copolymer. Size exclusion chromatography (SEC) measurement showed that the molecular weight (M_w) of the copolymer is 1.86 × 10⁵ g/mol and the polydispersity index (PDI( = 2.31. The self‐assembly behavior in different solvents was investigated utilizing laser light scattering (LLS), atomic force microscopy (AFM), and transmission electron microscopy (TEM); the copolymer film showed amphiphilicity, as measured by contact angle goniometry. Copyright © 2008 John Wiley & Sons, Ltd.     

Facile fabrication of hybrid nanoparticles surface grafted with multi‐responsive polymer brushes via block copolymer micellization and self‐catalyzed core gelation

Poly(2‐(dimethylamino)ethyl methacrylate)‐b‐poly(γ‐methacryloxypropyl‐trimethoxysilane) (PDMA‐b‐PMPS) was synthesized via consecutive reversible addition‐fragmentation chain transfer (RAFT) polymerizations in 1,4‐dioxane. Subsequent micellization of the obtained amphiphilic diblock polymer in aqueous solution led to the formation of nanoparticles consisting of hydrophobic PMPS cores and well‐solvated PDMA shells. Containing tertiary amine residues, PDMA blocks in micelle coronas can spontaneously catalyze the sol–gel reactions of trimethoxysilyl groups within PMPS cores, leading to the formation of hybrid nanoparticles coated with PDMA brushes. Transmission electron microscopy (TEM) and laser light scattering (LLS) revealed the presence of monodisperse spherical hybrid nanoparticles, and the grafting density of PDMA chains at the surface of nanoparticle cores was estimated to be ～5.8 nm²/chain. PDMA brushes exhibit dual stimuli‐responsiveness, and the swelling/collapse of them can be finely tuned with solution pH and temperatures. The obtained multi‐responsive hybrid nanoparticles might find potential applications in fields such as smart devices, recyclable catalysts, and intelligent nanocarriers for drug delivery or gene transfection. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 2379–2389, 2008     

An Alternative Synthesis of the Dopaminergic Drug 2‐Amino‐1,2,3,4‐tetrahydronaphthalene‐5,6‐diol (5,6‐ADTN)

Racemic 2‐amino‐1,2,3,4‐tetrahydronaphthalene‐5,6‐diol (5,6‐ADTN; 4 ) was synthesized from 5,6‐dimethoxynaphthalene‐2‐carboxylic acid ( 14 ) in four steps (60% overall yield; Scheme). The crucial steps of the synthesis are Birch reduction of 14 to the valuable synthon 15 , Curtius reaction and carbamate formation ( 16 ), hydrogenolysis ( 17 ), and demethylation to the biologically active hydrobromide salt 18 of 4 .     

The practical synthesis of a novel and highly potent analogue of bryostatin

Macrocycle 1 is a new highly potent analogue of bryostatin 1, a promising anti-cancer agent currently in human clinical trials. In vitro, 1 displays picomolar affinity for PKC and exhibits over 100-fold greater potency than bryostatin 1 when tested against various human cancer cell lines. Macrocycle 1 can be generated in clinically required amounts by chemical synthesis in only 19 steps (LLS) and represents a new clinical lead for the treatment of cancer.     

A Unified Approach for the Assembly of Atisine‐ and Hetidine‐type Diterpenoid Alkaloids: Total Syntheses of Azitine and the Proposed Structure of Navirine C

A tetracyclic dinitrile was synthesized in twelve steps from cyclohex‐2‐en‐1‐one by using a chelation‐triggered conjugate addition to a γ‐hydroxy‐substituted α,β‐unsaturated nitrile and an oxidative dearomatization/Diels–Alder cycloaddition cascade as the key steps. The first total synthesis of azitine (in 17 steps) was achieved through a simple reductive cyclization of this intermediate and subsequent transformations while the total synthesis of the proposed structure of navirine C (in 19 steps) was accomplished by a hydrogen‐atom‐transfer reaction of the tetracyclic dinitrile, Pd/C‐catalyzed reductive cyclization, and subsequent functional group manipulation.     

Enantioselective Synthesis of the Cyclopiazonic Acid Family Using Sulfur Ylides

A convergent, nine‐step (LLS), enantioselective synthesis of α‐cyclopiazonic acid and related natural products is reported. The route features a) an enantioselective aziridination of an imine with a chiral sulfur ylide; b) a bioinspired (3+2)‐cycloaddition of the aziridine onto an alkene; and c) installation of the acetyltetramic acid by an unprecedented tandem carbonylative lactamization/N?O cleavage of a bromoisoxazole.     

LIGHT-SCATTERING STUDY OF POLYELECTROLYTE HOLLOW CAPSULES

Silver halide (AgX) microcrystal was used as template to synthesize hollow polyelectrolyte capsules. These hollow capsules were characterized by laser light scattering (LLS) used to measure the size of the capsules in solution. The ratio of hydrodynamic radius (Rh) from dynamic LLS to the radius of gyration (Rg) from static LLS is almost unity, revealing that the entities are hollow in solution. The results suggest that the LLS method can be regarded as a good complement to the confocal laser scanning microscopy (CLSM) method for the characterization of small hollow capsules, and it possesses the advantage of not needing fluorescence labeling.     

Asymmetric Total Synthesis of the Complex Polycyclic Xanthone FD-594

A highly convergent approach was developed to achieve the first asymmetric and scalable total synthesis of FD-594, a complex polycyclic xanthone natural product from Streptomyces sp. TA-0256, in a longest linear sequence (LLS) of 20 steps. The trans-9,10-dihydrophenanthrene-9,10-diol fragment (B-C-D ring) was generated through a new strategy involving asymmetric dihydroxylation followed by Cu-mediated oxidative cyclization. Late-stage stereoselective glycosylation assembled the angular hexacyclic framework with a β-linked 2,6-dideoxy trisaccharide fragment.     

A Hyperpolarizable 1H Magnetic Resonance Probe for Signal Detection 15 Minutes after Spin Polarization Storage

Nuclear magnetic resonance (NMR) and magnetic resonance imaging (MRI) are two extremely important techniques with applications ranging from molecular structure determination to human imaging. However, in many cases the applicability of NMR and MRI are limited by inherently poor sensitivity and insufficient nuclear spin lifetime. Here we demonstrate a cost‐efficient and fast technique that tackles both issues simultaneously. We use the signal amplification by reversible exchange (SABRE) technique to hyperpolarize the target ¹H nuclei and store this polarization in long‐lived singlet (LLS) form after suitable radiofrequency (rf) pulses. Compared to the normal scenario, we achieve three orders of signal enhancement and one order of lifetime extension, leading to ¹H NMR signal detection 15 minutes after the creation of the detected states. The creation of such hyperpolarized long‐lived polarization reflects an important step forward in the pipeline to see such agents used as clinical probes of disease.