Analysing persistent organic pollutants in eggs, blood and tissue of the green sea turtle (Chelonia mydas) using gas chromatography with tandem mass spectrometry (GC-MS/MS)

Investigation into persistent organic pollutants (POPs) in sea turtles is an important area of conservation research due to the harmful effects of these chemicals. However, the analysis of POPs in the green sea turtle (Chelonia mydas) has been limited by methods with relatively high limits of detection and high costs associated with multiple sample injections into complex arrangements of analytical equipment. The present study aimed to develop a method that could detect a large number of POPs in the blood, eggs and tissue of C. mydas at trace concentrations. A gas chromatography with tandem mass spectrometry (GC-MS/MS) method was developed that could report 125 POP compounds to a limit of detection of <35 pg g^?1 using a single sample injection. The recoveries of internal standards ranged from 30% to 96%, and the standard reference materials were reported to within 70% of the certified values. The coefficient of variation of ten replicates of pooled egg sample was <20% for all compounds, indicating low within-run variation. This GC-MS/MS method is an improvement of previous methods for analysing POPs in C. mydas in that more compounds can be reported at lower concentrations and the accuracy and precision of the method are sound. This is particularly important for C. mydas as they occupy a low trophic level and have lower concentrations of POPs. This method is also simple to set up, and there are minimal differences in sample preparation for the different tissue types.     

Origin assessment of green coffee (Coffea arabica) by multi-element stable isotope analysis of caffeine

The delta(13)C(VPDB), delta(2)H(VSMOW) and delta(18)O(VSMOW) values of caffeine isolated from Arabica green coffee beans of different geographical origin have been determined by isotope ratio mass spectrometry (IRMS) using elemental analysis (EA) in the "combustion" (C) and "pyrolysis" (P) modes (EA-C/P-IRMS). In total, 45 coffee samples (20 from Central and South America, 16 from Africa, six from Indonesia, and three from Jamaica and Hawaii) were analysed, as well as three reference samples of synthetic caffeine. Validation was performed by excluding isotope discrimination in the course of sample preparation and determining linear dynamic ranges for EA-P-IRMS measurements. The values for caffeine from green coffee ranged from -25.1 to - 29.9 per thousand, -109 to -198 per thousand, and +2.0 to -12.0 per thousand for delta(13)C(VPDB), delta(2)H(VSMOW), and delta(18)O(VSMOW), respectively. Data evaluation by linear discrimination analysis (LDA) and by classification and regression tree (CART) analysis revealed the delta(18)O(VSMOW) values to be highly significant. Use of LDA on the delta(2)H(VSMOW) and delta(18)O(VSMOW) data from coffee of African and Central/South American provenance led to error rates of 5.7% and 7.7% for adaption and cross validation, respectively.     

Enantioselective stable isotope analysis (ESIA) of polar herbicides

Assessing the environmental fate of chiral micropollutants such as herbicides is challenging. The complexity of aquatic systems often makes it difficult to obtain hydraulic mass balances, which is a prerequisite when assessing degradation based on concentration data. Elegant alternatives are concentration-independent approaches like compound-specific isotope analysis or enantiospecific concentration analysis. Both detect degradation-induced changes from ratios of molecular species, either isotopologues or enantiomers. A combination of both—enantioselective stable isotope analysis (ESIA)—provides information on ¹³C/¹²C ratios for each enantiomer separately. Recently, Badea et al. demonstrated for the first time ESIA for the insecticide α-hexachlorocyclohexane. The present study enlarges the applicability of ESIA to polar herbicides such as phenoxy acids: 4-CPP ((RS)-2-(4-chlorophenoxy)-propionic acid), mecoprop (2-(4-chloro-2-methylphenoxy)-propionic acid), and dichlorprop (2-(2,4-dichlorophenoxy)-propionic acid). Enantioselective gas chromatography–isotope ratio mass spectrometry was accomplished with derivatization prior to analysis. Precise carbon isotope analysis (2σ?≤?0.5‰) was obtained with ≥7 ng C on column. Microbial degradation of dichlorprop, 2-(2,4-dichlorophenoxy)-propionic acid by Delftia acidovorans MC1 showed pronounced enantiomer fractionation, but no isotope fractionation. In contrast, Badea et al. observed isotope fractionation, but no enantiomeric fractionation. Hence, the two lines of evidence appear to complement each other. They may provide enhanced insight when combined as ESIA.     

Control of origin of larch wood: discrimination between European (Austrian) and Siberian origin by stable isotope analysis

Most of the coniferous wood of non‐European origin that is imported into the European Union (EU) has to be inspected phytosanitarily, to prevent the introduction and spread of harmful pests in EU territory. Wood importers have been caught declaring Siberian larch wood as being of European origin to save the costs of the inspection. Therefore, an unequivocal method has to be developed in addition to the traditional analysis of the tree ring density to identify incorrect declarations of larch wood origin. For this purpose, δ¹⁸O and δ¹³C analyses have been carried out to check if Siberian larch wood can be discriminated from European larch. Measurements have been carried out on bulk wood samples, as the method has to be designed to be as simple as possible. The results show an overlapping of the Siberian and Austrian δ¹³C, and no overlapping for the δ¹⁸O values. Copyright © 2009 John Wiley & Sons, Ltd.     

Discrepancies between isotope ratio infrared spectroscopy and isotope ratio mass spectrometry for the stable isotope analysis of plant and soil waters

The use of isotope ratio infrared spectroscopy (IRIS) for the stable hydrogen and oxygen isotope analysis of water is increasing. While IRIS has many advantages over traditional isotope ratio mass spectrometry (IRMS), it may also be prone to errors that do not impact upon IRMS analyses. Of particular concern is the potential for contaminants in the water sample to interfere with the spectroscopy, thus leading to erroneous stable isotope data. Water extracted from plant and soil samples may often contain organic contaminants. The extent to which contaminants may interfere with IRIS and thus impact upon data quality is presently unknown. We tested the performance of IRIS relative to IRMS for water extracted from 11 plant species and one organic soil horizon. IRIS deviated considerably from IRMS for over half of the samples tested, with deviations as large as 46‰ (δ²H) and 15.4‰ (δ¹⁸O) being measured. This effect was reduced somewhat by using activated charcoal to remove organics from the water; however, deviations as large as 35‰ (δ²H) and 11.8‰ (δ¹⁸O) were still measured for these cleaned samples. Interestingly, the use of activated charcoal to clean water samples had less effect than previously thought for IRMS analyses. Our data show that extreme caution is required when using IRIS to analyse water samples that may contain organic contaminants. We suggest that the development of new cleaning techniques for removing organic contaminants together with instrument‐based software to flag potentially problematic samples are necessary to ensure accurate plant and soil water analyses using IRIS. Copyright © 2010 John Wiley & Sons, Ltd.     

Discrimination between ginseng from Korea and China by light stable isotope analysis

Ginseng is a health food and traditional medicine highly valued in Asia. Ginseng from certain origins is higher valued than from other origins, so that a reliable method for differentiation of geographical origin is important for the economics of ginseng production. To discriminate between ginseng samples from South Korea and PR China, 29 samples have been analyzed for the isotopic composition of the elements H, C and N. The results showed δ(2)H values between -94 and -79‰, for δ(13)C -27.9 to -23.7‰ and for δ(15)N 1.3-5.4‰ for Chinese ginseng. Korean ginseng gave δ(2)H ratios between -91 and -69‰, δ(13)C ratios between -31.2 and -22.4‰ and δ(15)N ratios between -2.4 and +7‰. Despite the overlap between the values for individual isotopes, a combination of the isotope systems gave a reasonable differentiation between the two geographic origins. Especially the statistically significant difference in δ(2)H ratios facilitated the differentiation between Korean and Chinese ginseng samples.     

Homogeneous isotope exchange between thiourea and bis(thiourea)mercury(II) complex

The isotope exchange behavior of thiourea with bis(thiourea)mercury(II) complex has been studied. The concentrations of both the metal ion and the complex were varied. The results show that the complex is labile in the kinetic sense. An increase in concentration increases the rate of exchange. Increase in temperature also results in an increase of the rate of exchange.     

Spectral analysis software improves confidence in plant and soil water stable isotope analyses performed by isotope ratio infrared spectroscopy (IRIS)

Previous studies have demonstrated the potential for large errors to occur when analyzing waters containing organic contaminants using isotope ratio infrared spectroscopy (IRIS). In an attempt to address this problem, IRIS manufacturers now provide post-processing spectral analysis software capable of identifying samples with the types of spectral interference that compromises their stable isotope analysis. Here we report two independent tests of this post-processing spectral analysis software on two IRIS systems, OA-ICOS (Los Gatos Research Inc.) and WS-CRDS (Picarro Inc.). Following a similar methodology to a previous study, we cryogenically extracted plant leaf water and soil water and measured the δ(2)H and δ(18)O values of identical samples by isotope ratio mass spectrometry (IRMS) and IRIS. As an additional test, we analyzed plant stem waters and tap waters by IRMS and IRIS in an independent laboratory. For all tests we assumed that the IRMS value represented the "true" value against which we could compare the stable isotope results from the IRIS methods. Samples showing significant deviations from the IRMS value (>2σ) were considered to be contaminated and representative of spectral interference in the IRIS measurement. Over the two studies, 83% of plant species were considered contaminated on OA-ICOS and 58% on WS-CRDS. Post-analysis, spectra were analyzed using the manufacturer's spectral analysis software, in order to see if the software correctly identified contaminated samples. In our tests the software performed well, identifying all the samples with major errors. However, some false negatives indicate that user evaluation and testing of the software are necessary. Repeat sampling of plants showed considerable variation in the discrepancies between IRIS and IRMS. As such, we recommend that spectral analysis of IRIS data must be incorporated into standard post-processing routines. Furthermore, we suggest that the results from spectral analysis be included when reporting stable isotope data from IRIS.     

Electron paramagnetic resonance (EPR) and stable isotope records of paleoenvironmental conditions during peat formation

EPR spectroscopy was performed on four peat cores (1-2.5 m depth) collected from Yellowstone National Park (USA), Scotland (UK) and Lower Silesia (Poland) to study peat formation process. The stable free radicals identified in all investigated samples are semiquinone type and g-parameters range from 2.0030 to 2.0048. The highest g-values are characteristic of upper well-aerated peat layers and gradually decrease with depth. The lowest g-values are typical of relatively old fens and bogs where anaerobic conditions are expected and carbonization processes are advanced. The decrease in g-parameter value is connected with conjugation of semiquinone units with gradually augmented polyaromatic units in the peat substance. Generally the radical concentration increases with depth (0.05-5x10(17) spins/gram). However the g-values, line width parameters, and spin concentrations exhibit strong variations in some peat layers. Variation of these parameters observed for certain peat horizons correlate with the variation of carbon stable isotopic composition. For the old well-conserved peat deposits (e.g. Scotland/UK, approximately 5600 BP), variation of EPR parameters may be used to study paleo redox conditions.     

Homogeneous isotope exchange between nickel(II) and bis(resacetophenone phenylhydrazone) nickel(II) complex

Isotope exchange behavior of bis-resacetophenone phenylhydrazone) nickel(II) complex with nickel(II) in tri-n-butyl phosphate and methanol medium has been studied. The studies were carried out at different temperatures varying the concentration of both metal ion and the complex. The results show that the complex is labile in the kinetic sense. Increase in temperature increases the isotope exchange rate. The increase in concentration also results in an enhancement of the rate of reaction.     

Homogeneous isotope exchange between copper(II) and bis(resacetophenone oxime)copper(II) complex

Isotope exchange behavior of bis(resacetophenone oxime)copper(II) complex with copper(II) in tri-n-butyl-phosphate and methanol medium has been studied. The studies were carried out at different temperatures varying the concentration of both metal ion and complex. The results show that the complex is labile in the kinetic sense. Increase in temperature increases the isotope exchange rate. The increase in concentration also results in enhancement of the rate of reaction.     

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)

The identification of metabolically active microbial key players is fundamental for understanding the structure and functions of contaminant-degrading communities. The metabolic activity can be analysed by feeding the microbial culture with stable-isotope-labelled substrates and subsequently tracing their incorporation into the biomass. In this paper we present a method which is able to detect the incorporation of stable isotopes from the substrate into the proteins of a benzene-metabolising microorganism. Pseudomonas putida strain ML2 was grown under aerobic conditions with the substrates (12)C-benzene, (13)C-benzene or (15)N-ammonium and (12)C-benzene. Proteins of these cultures were resolved by two-dimensional gel electrophoresis (2-DE) and corresponding protein spots were subjected to matrix-assisted laser ionization/desorption mass spectrometric (MALDI-MS) analysis. The proteins of the (12)C-sample were identified by peptide mass fingerprinting (PMF) as well as by tandem mass spectrometric (MS/MS) measurements. The (13)C- or (15)N-content of the peptides from the labelling experiments was determined by MALDI-MS/MS. The incorporation of heavy isotopes into the proteins from cultures grown on (13)C-benzene and (15)N-ammonium was determined based on the mass differences between labelled and non-labelled peptides as well as on the isotopic distribution of the y(1)-ion of arginine. The method we present here principally allows the unravelling of the carbon and nitrogen flow not only in pure cultures, but also in microbial communities consisting of many microbial species. Copyright (c) 2008 John Wiley & Sons, Ltd.     

The stable hydrogen and oxygen isotope variation of water stored in polyethylene terephthalate (PET) bottles

A set of bottled waters from a single natural spring distributed worldwide in polyethylene terephthalate (PET) bottles has been used to examine the effects of storage in plastic polymer material on the isotopic composition (delta18O and delta2H values) of the water. All samples analyzed were subjected to the same packaging procedure but experienced different conditions of temperature and humidity during storage. Water sorption and the diffusive transfer of water and water vapor through the wall of the PET bottle may cause isotopic exchange between water within the bottle and water vapor in air near the PET-water interface. Changes of about +4 per thousand for delta2H and +0.7 per thousand for delta18O have been measured for water after 253 days of storage within the PET bottle. The results of this study clearly indicate the need to use glass bottles for storing water samples for isotopic studies. It is imperative to transfer PET-bottled natural waters to glass bottles for their use as calibration material or potential international working standards.     

Sulfur stable isotope distribution of polysulfide anions in an (NH4)2Sn aqueous solution

Methylation of polysulfides [(NH4)2Sn)] by reaction with CF3SO3CH3 followed by separation of the produced dimethylpolysulfides by liquid chromatography and subsequent highly accurate stable isotope analysis by a continuous-flow isotope ratio mass spectrometer shows that polysulfide anions in an aqueous solution exchange isotopes with the other sulfur species in the system. It demonstrates for the first time that polysulfide anions are 34S-enriched in equilibrium relative to total sulfur as a function of their sulfur chain length.