Diketopyrrolopyrrole Columnar Liquid‐Crystalline Assembly Directed by Quadruple Hydrogen Bonds

A diketopyrrolopyrrole (DPP) dye self‐assembles via a unique hydrogen‐bonding motif into an unprecedented columnar liquid‐crystalline (LC) structure. X‐ray and polarized FTIR experiments reveal that the DPPs organize into a one‐dimensional assembly with the chromophores oriented parallel to the columnar axis. This columnar structure is composed of two π–π‐stacked DPP dimers with mirror‐image configurations that stack alternately through quadruple hydrogen bonding by 90° rotation. This exotic packing is dictated by the complementarity between H‐bonds and the steric demands of the wedge‐shaped groups attached at the core. This novel LC supramolecular material opens a new avenue of research on DPP dye assemblies with photofunctional properties tailored by H‐bonding networks.     

Target‐Induced Catalytic Assembly of Y‐Shaped DNA and Its Application for In Situ Imaging of MicroRNAs

DNA is a highly programmable material that can be configured into unique high‐order structures, such as DNA branched junctions containing multiple helical arms converging at a center. Herein we show that DNA programmability can deliver in situ growth of a 3‐way junction‐based DNA structure (denoted Y‐shaped DNA) with the use of three hairpin‐shaped DNA molecules as precursors, a specific microRNA target as a recyclable trigger, and a DNA polymerase as a driver. We demonstrate that the Y‐shaped configuration comes with the benefit of restricted freedom of movement in confined cellular environment, which makes the approach ideally suited for in situ imaging of small RNA targets, such as microRNAs. Comparative analysis illustrates that the proposed imaging technique is superior to both the classic fluorescence in situ hybridization (FISH) method and an analogous amplified imaging method via programmed growth of a double‐stranded DNA (rather than Y‐shaped DNA) product.     

A Hydrogen‐Bonded Hexagonal Buckybowl Framework

A hydrogen‐bonded two‐dimensionally networked buckybowl architecture is presented. Two types of hexagonal network (HexNet) structures ( CPSM‐1 and CPSM‐2 ) have been achieved based on a sumanene derivative ( CPSM ) possessing 4,4′‐dicarboxy‐o ‐terphenyl groups in the periphery. CPSM‐1 has a waved HexNet structure with an alternate alignment of upward and downward bowls. CPSM‐2 has a bilayered HexNet structure composed of hamburger‐shaped dimers of the bowls. This demonstrates that non‐planar π‐systems can be networked two‐dimensionally by an appropriate supramolecular synthon to achieve structurally well‐defined unique bumpy π‐sheets. Furthermore, we revealed that CPSM‐2 undergoes anisotropic shrinking along the c axis by 11 % under high pressure conditions (970 MPa). The shrinkage is brought about by offset sliding between bumpy π‐surfaces of the bilayered HexNet sheets.     

Shape‐Assisted Self‐Organization in Highly Disordered Liquid Crystal Phases

In achiral rod‐like molecules, a nematic phase is the most disordered liquid crystal phase, which only has one‐directional order in the direction of the molecular long axis. A dumbbell‐shaped molecule (compound 3 : R−C₆H₁₀−CH=CH−C₆H₄−CH=CH−C₆H₁₀−R, (R=n C₅H₁₁)), and its liquid crystal phase (X phase) are reported, which exhibit high scattering without thermal fluctuation between two nematic phases under a polarized light optical microscope. The X phase was investigated by X‐ray diffraction, scanning electron microscopy, atomic force microscopy, and molecular dynamics simulation. A layered structure was ascertained for which a molecular self‐organization mechanism was postulated in which the super‐structure is based on lateral intermolecular interlocking. A second nematic phase above the X phase consisted of “rice grain”‐shaped particles.     

The Role of the Axial Substituent in Subphthalocyanine Acceptors for Bulk‐Heterojunction Solar Cells

Four hexachlorosubphthalocyanines SubPcCl₆‐X bearing different axial substituents (X) have been synthesized for use as novel electron acceptors in solution‐processed bulk‐heterojunction organic solar cells. Subphthalocyanines are aromatic chromophoric molecules with cone‐shaped structure, good solution processability, intense optical absorption in the visible spectral region, appropriate electron mobilities, and tunable energy levels. Solar cells with subphthalocyanines as the electron acceptor and PTB7‐Th as the electron donor exhibit a power conversion efficiency up to 4 % and an external quantum efficiency approaching 60 % due to significant contributions from both the electron donor and the electron acceptor to the photocurrent, indicating a promising prospect of non‐fullerene acceptors based on subphthalocyanines and structurally related systems.     

Twisted N‐Doped Nano‐Graphenes: Synthesis,Characterization, and Resolution

Two diastereoisomeric N‐doped nanographene derivatives have been efficiently prepared in two synthetic steps starting from an ethynylated hexaazatriphenylene building block. The first derivative adopts a D₃‐symmetrical propeller‐shaped structure with three equivalent nanographene foils. The structure of the second diastereoisomer is C₂‐symmetrical and differs from the first one by the way two peripheral nanographene foils overlap. Owing to their intertwined structures, the two N‐doped nanographenes are soluble in organic solvents and could be characterized by a combination of several analytical tools. Resolution of the D₃‐symmetrical derivative has been achieved and CD measurements revealed extremely strong Cotton effects.     

A Highly Warped Heptagon‐Containing sp2 Carbon Scaffold via Vinylnaphthyl π‐Extension

A new strategy is demonstrated for the synthesis of warped, negatively curved, all‐sp²‐carbon π‐scaffolds. Multifold C?C coupling reactions are used to transform a polyaromatic borinic acid into a saddle‐shaped polyaromatic hydrocarbon ( 2 ) bearing two heptagonal rings. Notably, this Schwarzite substructure is synthesized in only two steps from an unfunctionalized alkene. A highly warped structure of 2 was revealed by X‐ray crystallographic studies and pronounced flexibility of this π‐scaffold was ascertained by experimental and computational studies. Compound 2 exhibits excellent solubility, visible range absorption and fluorescence, and readily undergoes two reversible one‐electron oxidations at mild potentials.     

Synthesis of graft copolymers with “V‐shaped” and “Y‐shaped” side chains via controlled radical and anionic polymerizations

A combination of nitroxide‐mediated radical polymerization and living anionic polymerization was used to synthesize a series of well‐defined graft (co)polymers with “V‐shaped” and “Y‐shaped” branches. The polymer main chain is a copolymer of styrene and p‐chloromethylstyrene (PS‐co‐PCMS) prepared via nitroxide‐mediated radical polymerization. The V‐shaped branches were prepared through coupling reaction of polystyrene macromonomer, carrying 1,1‐diphenylethylene terminus, with polystyryllithium or polyisoprenyllithium. The Y‐shaped branches were prepared throughfurther polymerization initiated by the V‐shaped anions. The obtained branches, carrying a living anion at the middle (V‐shaped) or at the end of the third segment (Y‐shaped), were coupled in situ with pendent benzyl chloride of PS‐co‐PCMS to form the target graft (co)polymers. The purified graft (co)polymers were analyzed by size exclusion chromatography equipped with a multiangle light scattering detector and a viscometer. The result shows that the viscosities and radii of gyration of the branched polymers are remarkably smaller than those of linear polystyrene. In addition, V‐shaped product adopts a more compact conformation in dilute solution than the Y‐shaped analogy. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 4013–4025, 2007     

Treating Tumors at Low Drug Doses Using an Aptamer–Peptide Synergistic Drug Conjugate

Combination chemotherapy must strike a difficult balance between safety and efficacy. Current regimens suffer from poor therapeutic impact because drugs are given at their maximum tolerated dose (MTD), which compounds the toxicity risk and exposes tumors to non‐optimal drug ratios. A modular framework has been developed that selectively delivers drug combinations at synergistic ratios via tumor‐targeting aptamers for effective low‐dose treatment. A nucleolin‐recognizing aptamer was coupled to peptide scaffolds laden with precise ratios of doxorubicin (DOX) and camptothecin (CPT). This construct had an extremely low IC₅₀ (31.9 nm ) against MDA‐MB‐231 breast cancer cells in vitro, and exhibited in vivo efficacy at micro‐dose injections (500 and 350 μg kg^?1 dose^?1 of DOX and CPT, respectively) that are 20–30‐fold lower than their previously‐reported MTDs. This approach represents a generalizable strategy for the safe and consistent delivery of combination drugs in oncology.     

Direct Visualization of Single Nuclear Pore Complex Proteins Using Genetically‐Encoded Probes for DNA‐PAINT

The nuclear pore complex (NPC) is one of the largest and most complex protein assemblies in the cell and, among other functions, serves as the gatekeeper of nucleocytoplasmic transport. Unraveling its molecular architecture and functioning has been an active research topic for decades with recent cryogenic electron microscopy and super‐resolution studies advancing our understanding of the architecture of the NPC complex. However, the specific and direct visualization of single copies of NPC proteins is thus far elusive. Herein, we combine genetically‐encoded self‐labeling enzymes such as SNAP‐tag and HaloTag with DNA‐PAINT microscopy. We resolve single copies of nucleoporins in the human Y‐complex in three dimensions with a precision of circa 3 nm, enabling studies of multicomponent complexes on the level of single proteins in cells using optical fluorescence microscopy.     

Mapping the Geometry of Metal Three‐Coordination Using Crystal Structure Data: Reaction Pathway for Ligand Addition to Linear HgII Species

Symmetry‐modified principal‐component analysis has been used to visualise the geometrical distortions of three‐coordinate metal centres observed in crystal structures retrieved from the Cambridge Structural Database. It is shown that compounds of Cu, Ag, Hg, Zn, and Au dominate the dataset, and exhibit distortions away from the trigonal planar archetype towards a) T‐shaped and b) Y‐shaped geometries. A small number of compounds, principally of Cu and Ag, also show distortions towards trigonal pyramidal geometries. The interconversions from Y‐shaped geometries, through the trigonal planar form to T‐shaped geometries are clearly mapped by the PC analysis. For Hg^II complexes, it is possible to interpret the transition from T‐shaped geometries to the trigonal planar form in terms of a reaction pathway for ligand addition to linear L₁? Hg^II? L₂ species.     

Predicting Stable Molecular Structures for (RNC)2AuIX Complexes

Calculations have been performed at the MP2 and DFT levels for investigating the reasons for the difficulties in synthesizing bis(isocyanide)gold(I) halide complexes. Three‐coordinated gold(I) complexes of the type (R₃P)₂Au^IX ( 1 ) can be synthesized, whereas the analogous isocyanide complexes (RNC)₂Au^IX ( 2 ) are not experimentally known. The molecular structures of (R₃P)₂Au^IX (X = Cl, Br, and I) and (RNC)₂Au^IX with X = halide, cyanide, nitrite, methylthiolate, and thiocyanate are compared and structural differences are discussed. Calculations of molecular properties elucidate which factors determine the strength of the gold‐ligand interactions in (RNC)₂Au^IX. The linear bonding mode of RNC favors a T‐shaped geometry instead of the planar Y‐shaped trigonal structure of (R₃P)₂Au^IX complexes that have been synthesized. An increased polarity of the Au–X bond in 2 leads to destabilization of the Y‐shaped structure. Chalcogen‐containing ligands or cyanide appear to be good X‐ligand candidates for synthesis of (RNC)₂Au^IX complexes.     

Cyclic Depsipeptide BE‐43547A2: Synthesis and Activity against Pancreatic Cancer Stem Cells

Asymmetric total synthesis of the cyclic depsipeptide BE‐43547A₂ was achieved in 15 linear steps on a 350 mg scale in one batch. The synthesis features the highly diastereoselective construction of an α‐hydroxy‐β‐ketoamide through α‐hydroxylation with a d.r. of up to 86:1. BE‐43547A₂ significantly reduces the percentage of pancreatic cancer stem cells (PCSCs) in Panc‐1 cell cultures, and dramatically reduces the tumorsphere‐forming capability of Panc‐1 cells. An in vivo tumor‐initiation assay, a gold standard for cancer stem cell assays, confirmed that BE‐43547A₂ can abolish the tumorigenesis of Panc‐1 cells. The anti‐PCSC activity of BE‐43547A₂ could make this depsipeptide scaffold a promising starting point for discovering new PCSC‐targeting drugs.     

Cytoprotective Encapsulation of Individual Jurkat T Cells within Durable TiO2 Shells for T‐Cell Therapy

Lymphocytes, such as T cells and natural killer (NK) cells, have therapeutic promise in adoptive cell transfer (ACT) therapy, where the cells are activated and expanded in vitro and then infused into a patient. However, the in vitro preservation of labile lymphocytes during transfer, manipulation, and storage has been one of the bottlenecks in the development and commercialization of therapeutic lymphocytes. Herein, we suggest a cell‐in‐shell (or artificial spore) strategy to enhance the cell viability in the practical settings, while maintaining biological activities for therapeutic efficacy. A durable titanium oxide (TiO₂) shell is formed on individual Jurkat T cells, and the CD3 and other antigens on cell surfaces remain accessible to the antibodies. Interleukin‐2 (IL‐2) secretion is also not hampered by the shell formation. This work suggests a chemical toolbox for effectively preserving lymphocytes in vitro and developing the lymphocyte‐based cancer immunotherapy.     

Volatile Organic Compound Based Probe for Induced Volatolomics of Cancers

The development of efficient protocols for cancer diagnosis remains highly challenging. An emerging approach relies on the detection in exhaled breath of volatile organic compounds (VOC) produced by tumours. In this context, described here is a novel strategy in which a VOC‐based probe is converted selectively in malignant tissues, by a tumour‐associated enzyme, for releasing the corresponding VOC. The latter is then detected in the exhaled breath as a tumour marker for cancer diagnosis. This approach allows the detection of several different tumours in mice, the monitoring of tumour growth and tumour response to chemotherapy. Thus, the concept of “induced volatolomics” provides a new way to explore biological processes using VOC‐based probes that could be adapted to many biomedical applications.     

Surface‐Dependent Chemoselectivity in C−C Coupling Reactions

Surface‐confined covalent coupling reactions of the linear compound 4‐(but‐3‐en‐1‐ynyl)‐4′‐ethynyl‐1,1′‐biphenyl ( 1 ), which contains one alkyne and one enyne group on opposing ends, have been investigated using scanning tunneling microscopy (STM) and density functional theory (DFT) calculations. The reactions show a surface‐dependent chemoselectivity: on Au(111), compound 1 preferentially yields cyclotrimerization products, while on Cu(111), a selective coupling between the enyne and alkyne groups is observed. Linear, V‐shaped string formations combined with Y‐shaped bifurcation motifs result in a random reticulation on the entire surface. DFT calculations show that the C?H???π^δ? transition state of the reaction between the deprotonated alkyne group and a nearby H‐donor of the alkene group plays a key role in the mechanism and high chemoselectivity. This study highlights a concept that opens new avenues to the surface‐confined synthesis of covalent carbon‐based sp–sp² polymers.     

Y‐shaped poly(ethylene glycol) and poly(trimethylene carbonate) amphiphilic copolymer: Synthesis and for drug delivery

New Y‐shaped (AB₂‐type) amphiphilic copolymers of poly(ethylene glycol) (PEG) with poly(trimethylene carbonate) (PTMC), PEG‐b‐(PTMC)₂, were successfully synthesized by the ring‐opening polymerization (ROP) of TMC with bishydroxy‐modified monomethoxy‐PEG (mPEG). First, a bishydroxy functional ROP initiator was synthesized by esterification of acryloyl bromide with mPEG, followed by Michael addition using excess diethanolamine. A series of Y‐shaped amphiphilic PEG‐(PTMC)₂ block copolymers were obtained via ROP of TMC using this PEG with bishydroxyl end groups as macroinitiator and ZnEt₂ as catalyst. The amphiphilic block copolymers with different compositions were characterized by gel permeation chromatography (GPC) and ¹H NMR, and their molecular weight was measured by GPC. The results showed that the molecular weight of Y‐shaped copolymers increased with the increase of the molar ratio of TMC to mPEG‐(OH)₂ initiator in feed while the PEG chain length was kept constant. The Y‐shaped copolymer mPEG‐(PTMC)₂ could self‐assemble into micelles in aqueous medium and the critical micelle concentration values of the micelles decrease with increase in hydrophobic PTMC block length of mPEG‐(PTMC)₂. The in vitro cytotoxicity and controlled drug release properties of the Y‐shaped amphiphilic block copolymers were also investigated. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 8131–8140, 2008     

A Hydrogen‐Bonded Organic Framework (HOF) with Type IV NH3 Adsorption Behavior

An S‐shaped gas isotherm pattern displays high working capacity in pressure‐swing adsorption cycle, as established for CO₂, CH₄, acetylene, and CO. However, to our knowledge, this type of adsorption behavior has not been revealed for NH₃ gas. Herein, we design and characterize a hydrogen‐bonded organic framework (HOF) that can adsorb NH₃ uniquely in an S‐shape (type IV) fashion. While conventional porous materials, mostly with type I NH₃ adsorption behavior, require relatively high regeneration temperature, this platform which has significant working capacity is easily regenerated and recyclable at room temperature.     

β‐Carboline (norharman)

The structure of β‐carboline, also called norharman (systematic name: 9H‐pyrido[3,4‐b]indole), C₁₁H₈N₂, has been determined at 110 K. Norharman is prevalent in the environment and the human body and is of wide biological interest. The structure exhibits intermolecular N—H...N hydrogen bonding, which results in a one‐dimensional herringbone motif. The three rings of the norharman molecule collectively result in a C‐shaped curvature of 3.19 (13)° parallel to the long axis. The diffraction data show shorter pyridyl C—C bonds than those reported at the STO‐3G level of theory.     

Synthesis and characterization of biodegradable amphiphilic ABC Y‐shaped miktoarm terpolymer by click chemistry for drug delivery

Biodegradable amphiphilic ABC Y‐shaped triblock copolymer (MPBC) containing PEG, PBLA, and PCL segments was synthesized via the combination of enzymatic ring‐opening polymerization (ROP) of epsilon‐caprolactone, ROP of BLA‐N‐carboxyanhydride and click chemistry, where PEG, PBLA, and PCL are poly(ethylene glycol), poly(benzyl‐l ‐aspartate), and polycaprolactone, respectively. Propynylamine was employed as ROP initiator for the preparation of alkynyl‐terminated PBLA and methyloxy‐PEG with hydroxyl and azide groups at the chain‐end was used as enzymatic ROP initiator for synthesis of monoazido‐midfunctionalized block copolymer mPEG‐b‐PCL. The subsequent click reaction led to the formation of Y‐shaped asymmetric heteroarm terpolymer MPBC. The polymer structures were characterized by different analyses. The MPBC terpolymer self‐assembled into micelles and physically encapsulated drug doxorubicin (DOX) to form DOX‐loaded micelles, which showed good stability and slow drug release. In vitro cytotoxicity study indicated that the MPBC micelles were nontoxic and the DOX‐loaded micelles displayed obvious anticancer activity similar to free DOX against HeLa cells. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2014 , 52, 3346–3355