Differentiation of Boc‐protected α,δ‐/δ,α‐ and β,δ‐/δ,β‐hybrid peptide positional isomers by electrospray ionization tandem mass spectrometry

Two new series of Boc‐N‐α,δ‐/δ,α‐ and β,δ‐/δ,β‐hybrid peptides containing repeats of L ‐Ala‐δ⁵‐Caa/δ⁵‐Caa‐L ‐Ala and β³‐Caa‐δ⁵‐Caa/δ⁵‐Caa‐β³‐Caa (L ‐Ala = L ‐alanine, Caa = C‐linked carbo amino acid derived from D ‐xylose) have been differentiated by both positive and negative ion electrospray ionization (ESI) ion trap tandem mass spectrometry (MS/MS). MSⁿ spectra of protonated isomeric peptides produce characteristic fragmentation involving the peptide backbone, the Boc‐group, and the side chain. The dipeptide positional isomers are differentiated by the collision‐induced dissociation (CID) of the protonated peptides. The loss of 2‐methylprop‐1‐ene is more pronounced for Boc‐NH‐L ‐Ala‐δ‐Caa‐OCH₃ (1), whereas it is totally absent for its positional isomer Boc‐NH‐δ‐Caa‐L ‐Ala‐OCH₃ (7), instead it shows significant loss of t‐butanol. On the other hand, second isomeric pair shows significant loss of t‐butanol and loss of acetone for Boc‐NH‐δ‐Caa‐β‐Caa‐OCH₃ (18), whereas these are insignificant for its positional isomer Boc‐NH‐β‐Caa‐δ‐Caa‐OCH₃ (13). The tetra‐ and hexapeptide positional isomers also show significant differences in MS² and MS³ CID spectra. It is observed that ‘b’ ions are abundant when oxazolone structures are formed through five‐membered cyclic transition state and cyclization process for larger ‘b’ ions led to its insignificant abundance. However, b₁⁺ ion is formed in case of δ,α‐dipeptide that may have a six‐membered substituted piperidone ion structure. Furthermore, ESI negative ion MS/MS has also been found to be useful for differentiating these isomeric peptide acids. Thus, the results of MS/MS of pairs of di‐, tetra‐, and hexapeptide positional isomers provide peptide sequencing information and distinguish the positional isomers. Copyright © 2010 John Wiley & Sons, Ltd.     

γ,δ‐ and δ,ε‐Unsaturated Aldehydes from γ‐ and δ‐Lactones in One Step. Preliminary Communication

A one‐step transformation of γ‐ and δ‐(spiro)lactones into γ,δ‐ and δ,ε‐unsaturated aldehydes with an excess of formic acid in the vapor phase over a supported manganese catalyst is described for the first time. The scope and limitations of this new reaction are shown with different lactones as substrate, and a mechanistic rationale is proposed.     

Simultaneous δ15N, δ13C and δ34S measurements of low‐biomass samples using a technically advanced high sensitivity elemental analyzer connected to an isotope ratio mass spectrometer

Conventional simultaneous CNS stable isotope abundance measurements of solid samples usually require high sample amounts, up to 1 mg carbon, to achieve exact analytical results. This rarely used application is often impaired by high C:S element ratios when organic samples are analyzed and problems such as incomplete conversion into sulphur dioxide occur during analysis. We introduce, as a technical innovation, a high sensitivity elemental analyzer coupled to a conventional isotope ratio mass spectrometer, with which CNS‐stable isotope ratios can be determined simultaneously in samples with low carbon content (<40 µg C corresponding to ～100 µg dry weight). The system includes downsized reactors, a temperature program‐controlled gas chromatography (GC) column and a cryogenic trap to collect small amounts of sulphur dioxide. This modified application allows for highly sensitive measurements in a fully automated operation with standard deviations better than ±0.47‰ for δ¹⁵N and δ³⁴S and ±0.12‰ for δ¹³C (n = 127). Samples collected from one sampling site in a Baltic fjord within a short time period were measured with the new system to get a first impression of triple stable isotope signatures. The results confirm the potential of using δ³⁴S as a stable isotope tracer in combination with δ¹⁵N and δ¹³C measurements to improve discrimination of food sources in aquatic food webs. Copyright © 2009 John Wiley & Sons, Ltd.     

N1‐(4‐tert‐Butyl­phenyl)‐N2‐hydroxy‐α‐oxo‐α‐phenyl­acet­amidine and N2‐hydroxy‐N1‐(4‐nitro­phenyl)‐α‐oxo‐α‐phenyl­acet­amidine hemihydrate

In the title compounds, C₁₈H₂₀N₂O₂, (I), and C₁₄H₁₁N₃O₄·0.5H₂O, (II), respectively, the oxime groups have an E configuration. In (I), the mol­ecules exist as polymers bound by intermolecular C—H⋯O and O—H⋯N hydrogen bonds around inversion centres. In (II), intermolecular OW—H⋯N, OW—H⋯O and O—H⋯OW interactions stabilize the molecular packing.     

Simultaneous determination of δ15N and δ18O of N2O and δ13C of CH4 in nanomolar quantities from a single water sample

We have developed a rapid, sensitive, and automated analytical system to simultaneously determine the concentrations and stable isotopic compositions (δ¹⁵N, δ¹⁸O, and δ¹³C) of nanomolar quantities of nitrous oxide (N₂O) and methane (CH₄) in water, by combining continuous‐flow isotope‐ratio mass spectrometry and a helium‐sparging system to extract and purify the dissolved gases. Our system, which is composed of cold traps and a capillary gas chromatograph that use ultra‐pure helium as the carrier gas, achieves complete extraction of N₂O and CH₄ in a water sample and separation among N₂O, CH₄, and the other component gases. The flow path following exit from the gas chromatograph was periodically changed to pass the gases through the combustion furnace to convert CH₄ and the other hydrocarbons into CO₂, or to bypass the combustion furnace for the direct introduction of eluted N₂O into the mass spectrometer, for determining the stable isotopic compositions through monitoring the ions of m/z 44, 45, and 46 of CO and N₂O⁺. The analytical system can be operated automatically with sequential software programmed on a personal computer. Analytical precisions better than 0.2‰ and 0.3‰ and better than 1.4‰ and 2.6‰ were obtained for the δ¹⁵N and δ¹⁸O of N₂O, respectively, when more than 6.7 nmol and 0.2 nmol of N₂O, respectively, were injected. Simultaneously, analytical precisions better than 0.07‰ and 2.1‰ were obtained for the δ¹³C of CH₄ when more than 5.5 nmol and 0.02 nmol of CH₄, respectively, were injected. In this manner, we can simultaneously determine stable isotopic compositions of a 120 mL water sample with concentrations as low as 1.7 nmol/kg for N₂O and 0.2 nmol/kg for CH₄. Copyright © 2010 John Wiley & Sons, Ltd.     

13‐cis‐β,β‐Carotene and 15‐cis‐β,β‐carotene

13‐cis‐β,β‐Carotene, C₄₀H₅₆, crystallizes with a complete molecule in the asymmetric unit, whereas 15‐cis‐β,β‐carotene, also C₄₀H₅₆, has twofold symmetry about an axis through the central bond of the polyene chain. The polyene methyl groups are arranged on one side of the polyene chains for each molecule and the 6‐s‐cisβ end groups, with the cyclohexene rings in half‐chair conformations, are twisted out of the planes of the polyene chains by angles ranging from 41.37 (17) to 52.2 (4)°. The molecules in each structure pack so that the arms of one occupy the cleft of the next, and there is significant π–π stacking of the almost‐parallel polyene chains of the 15‐cis isomer, which approach at distances of 3.319 (1)–3.591 (1) Å.     

Aminodiphenylphosphanes: Isotope‐induced chemical shifts 1Δ14/15N(31P), coupling constants 1J(31P,15N), and chemical shifts δ15N and δ31P

A series of aminodiphenylphosphanes 1 [Ph₂P‐N(H)tBu ( a ), ‐NEt₂ ( b ), ‐NiPr₂ ( c )], 2 [Ph₂P‐NHPh ( a ), ‐NH‐2‐pyridine ( b ), ‐NH‐3‐pyridine ( c ), ‐NH‐4‐pyridine ( d ), NH‐pyrimidine ( e ), NH‐2,6‐Me₂‐C₆H₃ ( f ), NH‐3‐Me‐2‐pyridine ( g )], 3 [Ph₂P‐N(Me)Ph ( a ), ‐NPh₂ ( b )], and N‐pyrrolyldiphenylphosphane 4 (Ph₂P‐NC₄H₄) was prepared and studied by NMR (¹H, ¹³C, ³¹P, ¹⁵N NMR) spectroscopy. The isotope‐induced chemical shifts ¹Δ^14/15N(³¹P) were determined at natural abundance of ¹⁵N by using HEED INEPT experiments. A dependence of ¹Δ^14/15N(³¹P) on the substituents at nitrogen was found (alkyl < H < aryl; increasingly negative values). The magnitude and sign of the coupling constants ¹J(³¹P,¹⁵N) (positive sign) are dominated by the presence of the lone pair of electrons at the phosphorus atom. The X‐ray structural analysis of 2b is reported, showing the presence of dimers owing to intermolecular hydrogen bridges in the solid state. © 2001 John Wiley & Sons, Inc. Heteroatom Chem 12:542–550, 2001     

Synthesis of 4H‐1,3‐oxathiin‐4‐ones by reaction of α‐diazo‐β‐diketone with thiones

A series of 2,2‐disubstituted 5,6‐diphenyl‐4H‐1,3‐oxathiin‐4‐ones was synthesized by cycloaddition of thiones with benzoylphenylketene, which was generated by the thermal Wolff rearrangement of 2‐diazo‐1,3‐diphenyl‐1,3‐propanedione. © 2001 John Wiley & Sons, Inc. Heteroatom Chem 12:630–632, 2001     

Regioisomeric 4‐nitroindazole N1‐ and N2‐(β‐d‐ribonucleosides)

The structures of the isomeric nucleosides 4‐nitro‐1‐(β‐d ‐ribo­furan­osyl)‐1H‐indazole, C₁₂H₁₃N₃O₆, (I), and 4‐nitro‐2‐(β‐d ‐ribo­furan­osyl)‐2H‐indazole, C₁₂H₁₃N₃O₆, (II), have been determined. For compound (I), the conformation of the gly­cosylic bond is anti [χ = −93.6 (6)°] and the sugar puckering is C2′‐exo–C3′‐endo. Compound (II) shows two conformations in the crystalline state which differ mainly in the sugar pucker; type 1 adopts the C2′‐endo–C3′‐exo sugar puckering associated with a syn base orientation [χ = 43.7 (6)°] and type 2 shows C2′‐exo–C3′‐endo sugar puckering accompanied by a somewhat different syn base orientation [χ = 13.8 (6)°].     

17‐Oxo‐5α‐androstane‐3α,4β‐diyl diacetate and 17‐oxo‐5β‐androstane‐3α,4β‐diyl diacetate

The title compounds, both C₂₃H₃₄O₅, are the 5α and 5β configurations of two diacetate epimers. The 5β‐diacetate crystallizes in an hexagonal structure, unusual for steroid molecules. The unit cell has an accessible solvent volume of 358 ų, responsible for clathrate behaviour. The 5β‐epimer also features some shorter than average bond lengths in the 3α,4β‐acetoxy groups. The conformations of the molecules of both epimers are compared with those obtained through abinitio quantum chemistry calculations. Cohesion of the crystals can be attributed to van der Waals and weak molecular C—H⋯O interactions.     

δ‐Sulfanilamide

The δ polymorph of sulfanilamide (or 4‐aminobenzenesulfonamide), C₆H₈N₂O₂S, displays an overall three‐dimensional hydrogen‐bonded network that is dominated by a two‐dimensional substructure with R²₂(8) rings; these result from dimeric N—H...O interactions between adjacent sulfonamide groups. This study shows how the polymorphism of sulfanilamide is linked to its versatile hydrogen‐bonding capabilities.     

Online high‐precision δ2H and δ18O analysis in water by pyrolysis

A method for online simultaneous δ²H and δ¹⁸O analysis in water by high‐temperature conversion is presented. Water is injected by using a syringe into a high‐temperature carbon reactor and converted into H₂ and CO, which are separated by gas chromatography (GC) and carried by helium to the isotope ratio mass spectrometer for hydrogen and oxygen isotope analysis. A series of experiments was conducted to evaluate several issues such as sample size, temperature and memory effects. The δ²H and δ¹⁸O values in multiple water standards changed consistently as the reactor temperature increased from 1150 to 1480°C. The δ¹⁸O in water can be measured at a lower temperature (e.g. 1150°C) although the precision was relatively poor at temperatures <1300°C. Memory effects exist for δ²H and δ¹⁸O between two waters, and can be reduced (to <1%) with proper measures. The injection of different amounts of water may affect the isotope ratio results. For example, in contrast to small injections (100 nL or less) from small syringes (e.g. 1.2 µL), large injections (1 µL or more) from larger syringes (e.g. 10 µL) with dilution produced asymmetric peaks and shifts of isotope ratios, e.g. 4‰ for δ²H and 0.4‰ for δ¹⁸O, probably resulting from isotope fractionation during dilution via the ConFlo interface. This method can be used to analyze nanoliter samples of water (e.g. 30 nL) with good precision of 0.5‰ for δ²H and 0.1‰ for δ¹⁸O. This is important for geosciences; for instance, fluid inclusions in ancient minerals may be analyzed for δ²H and δ¹⁸O to help understand the formation environments. Copyright © 2009 John Wiley & Sons, Ltd.     

Measurement at the field scale of soil δ13C and δ15N under improved grassland

Variations in natural abundance of carbon (C) and nitrogen (N) stable isotopes are widely used as tools for many aspects of scientific research. By examining variations in the ratios of heavy to light stable isotopes, information can be obtained as to what physical, chemical and biological processes may be occurring. The spatial heterogeneity of soil δ¹⁵N‐ and δ¹³C‐values across a range of scales and under different land use have been described by a number of researchers and the natural abundances of the C and N stable isotopes in soils have been found to be correlated with many factors including hydrology, topography, land use, vegetation cover and climate. In this study the Latin square sampling +1 (LSS+1) sampling method was compared with a simple grid sampling approach for δ¹³C and δ¹⁵N measurement at the field scale. A set of 144 samples was collected and analysed for δ¹⁵N and δ¹³C from a 12 × 12 grid (in a 1 ha improved grassland field in south‐west England). The dimension of each cell of the grid was approximately 11 × 6 m. The 12 × 12 grid was divided into four 6 × 6 grids and the LSS+1 sampling technique was applied to these and the main 12 × 12 grid for a comparison of sample means and variation. The LSS+1 means from the 12 × 12 grid and the four 6 × 6 grids compared well with the overall grid mean because of the low variation within the field. The LSS+1 strategy (13 samples) generated representative samples from the 12 × 12 grid, and hence would be an acceptable method for sampling similar plots for the measurement of mean isotopic composition. Copyright © 2010 John Wiley & Sons, Ltd.