Taming Mars with a tent and a tunnel: creation of a biosphere-city

An unconventional site-specific outdoor utility sculpture, used as a Strait of Gibraltar stopper, may soon store unwanted Earth-atmosphere derived wastes (mineralized CO2 and CFCs) for hundreds of years. Such a Land Art processing facility, an anti-global warming/cooling antidote, is an appropriate macro-engineering response to allegedly impending human survival macro-problems.     

An efficient synthesis of pyrroles by a one-pot, three-component condensation of a carbonyl compound, an amine and a nitroalkene in a molten ammonium salt

A one-pot, three-component condensation of a carbonyl compound, an amine and a nitroalkene leading to an efficient synthesis of alkyl-substituted pyrroles has been carried out in molten tetrabutylammonium bromide. Neither a catalyst nor an organic solvent is required for this reaction and the molten ammonium salt is recyclable.     

Effect of a charged boundary on electrophoresis in a Carreau fluid: a sphere at an arbitrary position in a spherical cavity

The influence of a charged boundary on the electrophoretic behavior of an entity in a non-Newtonian fluid is studied by considering a sphere at an arbitrary position in a spherical cavity filled with a Carreau fluid under the conditions of low surface potential and weak applied electric field. The dependence of the mobility of a sphere on its position in a cavity, the size of a cavity, the thickness of a double layer, and the nature of a fluid is investigated. In addition to the fact that the effect of shear-thinning is advantageous to the movement of a sphere, several other interesting results are also observed. For instance, if an uncharged sphere is in a positively charged cavity, where the electroosmotic flow and the induced charge on the sphere surface play a role, the effect of shear-thinning is important only if the thickness of the double layer is either sufficiently thin or sufficiently thick. However, this might not be the case if a positively charged sphere is in an uncharged cavity.     

An oligopeptide containing the C-terminal sequence of RNase a has a potent RNase a binding property

We demonstrate that an oligopeptide containing the C-terminal sequence of RNase A binds to RNase A in a stoichiometric and site-specific manner. Our observations are consistent with the interaction found in the major domain-swapped RNase A dimer, so that the peptide binding may be promoted through the swapping with the C-terminal beta-sheet of RNase A. Because the design of a protein-binding peptide is much simpler than other methods such as the combinatorial method, we propose that investigation using an oligopeptide may be of general application to domain swapping in proteins as well as for the development of an oligopeptide tool that specifically binds to a target protein.     

Motion of a drop on a solid surface due to a wettability gradient

The hydrodynamic force experienced by a spherical-cap drop moving on a solid surface is obtained from two approximate analytical solutions and used to predict the quasi-steady speed of the drop in a wettability gradient. One solution is based on approximation of the shape of the drop as a collection of wedges, and the other is based on lubrication theory. Also, asymptotic results from both approximations for small contact angles, as well as an asymptotic result from lubrication theory that is good when the length scale of the drop is large compared with the slip length, are given. The results for the hydrodynamic force also can be used to predict the quasi-steady speed of a drop sliding down an incline.     

The polymerization of acrylates using a combination of a carbonyl compound and an amine as a photo-initiator system

Photo-initiator systems for the polymerization of acrylates, based on a mixture of an aryl ketone and an α,ω-diaminoalkane, have been investigated. Rate constants for the photoreduction of fluorenone by α,ω-diaminoalkanes have been evaluated: it was found that CH₃N groups are more relative than CH₃CH₂N groups. The relative rates of photo-oxidation of α,ω-diaminalkanes sensitised by benzophenone have been determined. Surprisingly, little correlation exists between the susceptibility of an amine towards oxidation and its ability to reduce excited carbonyl groups. Several mixtures composed of an aryl ketone and an α,ω-diaminoalkane were found to initiate the polymerization of methyl methacrylate. The efficiency of initiation appears to be related to the efficiency of reaction of the triplet carbonyl compound with the amine. The efficiency of a particular combination of an aryl ketone and an amine to cure films of acrylate oligomers is also governed to some extent by the efficiency of reaction of the triplet carbonyl compound with the amine. However, the structure of the amino alkyl radical produced in the initiation reaction appears to be of greater importance in determining the efficiency of polymerization. Radicals of the type R₂N?HCH₂OR were found to be highly efficient.     

Study of a transferred-arc plasma reactor with a converging wall and flow through a hollow cathode

In this paper the behavior of an arc in a transferred-arc plasma reactor with a converging wall geornetrr and flow through a hollow cathode is investigated numerically with emphasis on the fluid dynamics. The general conservation equations and auxiliary relations for the calculation domain are established based on reasonable assumptions Then, the coupled nonlinear differential equations are solved with suitable boundary conditions and temperature-dependent argon plasma properties at atmospheric pressure, by employing an efficient finite-difference method. The results, for a hollow cathode geornetrr with low injection flow rates, clear/y demonstrate the existence of the Maecker elect which is responsible Joy the formation of two recirculation zones. As the plasma gas flow rate is increased, the downstream recirculation zoner is swept away leaving only an upstream recirculation zone.     

Studies on a Simple Route to a Bicyclic Reserpine Intermediate

A concise route is described to a Reserpine synthetic intermediate having the features of ring E and an oxygen function for constructing ring D. This involves an unusual α-diketone cleavage, the selective elaboration of the carboxylated ring in 1-naphthoic acids and selective boron halide cleavage of ester and ether groups.     

Production of a positron microprobe using a transmission remoderator.

A production method for a positron microprobe using a beta+-decay radioisotope (22Na) source has been investigated. When a magnetically guided positron beam was extracted from the magnetic field, the combination of an extraction coil and a magnetic lens enabled us to focus the positron beam by a factor of 10 and to achieve a high transport efficiency (71%). A 150-nm-thick Ni(100) thin film was mounted at the focal point of the magnetic lens and was used as a remoderator for brightness enhancement in a transmission geometry. The remoderated positrons were accelerated by an electrostatic lens and focused on the target by an objective magnetic lens. As a result, a 4-mm-diameter positron beam could be transformed into a microprobe of 60 microm or less with 4.2% total efficiency. The S parameter profile obtained by a single-line scan of a test specimen coincided well with the defect distribution. This technique for a positron microprobe is available to an accelerator-based high-intensity positron source and allows 3-dimensional vacancy-type defect analysis and a positron source for a transmission positron microscope.     

Molecular dynamics simulations of GlpF in a micelle vs in a bilayer: conformational dynamics of a membrane protein as a function of environment

Octyl glucoside (OG) is a detergent widely employed in structural and functional studies of membrane proteins. To better understand the nature of protein-OG interactions, molecular dynamics simulations (duration 10 ns) have been used to explore an alpha-helical membrane protein, GlpF, in OG micelles and in DMPC bilayers. Greater conformational drift of the extramembraneous protein loops, from the initial X-ray structure, is seen for the GlpF-OG simulations than for the GlpF-DMPC simulation. The mobility of the transmembrane alpha-helices is approximately 1.3x higher in the GlpF-OG than the GlpF-DMPC simulations. The detergent is seen to form an irregular torus around the protein. The presence of the protein leads to a small perturbation in the behavior of the alkyl chains in the OG micelle, namely an approximately 15% increase in the trans-gauche(-)-gauche(+) transition time. Aromatic side chains (Trp, Tyr) and basic side chains (Arg, Lys) play an important role in both protein-detergent (OG) and protein-lipid (DMPC) interactions.     

The uncertainty of a result from a linear calibration

The standard error of a result obtained from a straight line calibration is given by a well known ISO-endorsed expression. Its derivation and use are explained and the approach is extended for any function that is linear in the coefficients, with an example of a weighted quadratic calibration in ICPAES. When calculating the standard error of an estimate, if QC data is available it is recommended to use the repeatability of the instrumental response, rather than the standard error of the regression, in the equation.     

Building a metal binding domain,one half at a time

The recently determined structure of a zinc binding peptide reveals that a particular sequence can adopt one stable fold as an isolated peptide but adopt an alternative structure as part of a larger protein domain.     

Design of a portable gas chromatography with a conducting polymer nanocomposite detector device and a method to analyze a gas mixture

A portable chromatography device and a method were developed to analyze a gas mixture. The device comprises a chromatographic column for separating components of a sample of the gas mixture. It has an air pump coupled to the inlet of a chromatographic column for pumping air and an injector coupled to the inlet of chromatographic column for feeding the sample using the air as a carrier gas. A detector is arranged downstream from and coupled to the outlet of the chromatographic column. The detector is a nanostructure semiconductive microfiber. The device further comprises an evaluation unit arranged and configured to evaluate each detected component to determine the concentration. The designed portable system was used for simultaneous detection of amines. The possibility of applying dispersive liquid–liquid microextraction for the determination of analytes in trace levels is demonstrated. The reproducibility of this method is acceptable, and good standard deviations were obtained. The relative standard deviation value is less than 6% for all analytes. Finally, the method was successfully applied to the extraction and determination of analytes in water samples.     

Squeezing a helium nanodroplet with a Rydberg electron

We have investigated, by means of density functional theory, the structure of a "scolium", that is, an electron circulating around a positively charged 4He nanodroplet, temporarily prevented from neutralization by the helium-electron repulsion. The positive ion core resides in the center of the nanodroplet where, as a consequence of electrostriction, a strong increase in the helium density with respect to its bulk value occurs. The electron enveloping the 4He cluster exerts an additional electrostatic pressure which further increases the local 4He density around the ion core. We argue that under such pressure, sufficiently small 4He nanodroplets may turn solid. The stability of a scolium with respect to electron-ion recombination is investigated.     

Binding of glycopeptide antibiotics to a model of a vancomycin-resistant bacterium

BACKGROUND: The vancomycin group of glycopeptide antibiotics is active against a wide range of gram-positive bacteria. The increasing resistance to vancomycin is the result of a change of an amide linkage (D-Ala-D-Ala) to an ester linkage (D-Ala-D-Lactate) in the bacterial cell-wall precursors. RESULTS: We have used a peptide terminating in the sequence -Lys-D-Ala-D-Lactate linked by its amino terminus to a docosanoyl (C22) acyl chain and anchored in a supported lipid monolayer to mimic the surface of vancomycin-resistant enterococci. Surface plasmon resonance analysis was then used to investigate the binding of glycopeptide group antibiotics to this surface. Vancomycin, which dimerises weakly, bound with low affinity, whereas strongly dimerising antibiotics, such as chloroeremomycin, bound with higher affinities. Antibiotics that have attached hydrophobic groups, such as teicoplanin and biphenylchloroeremomycin (LY307599), bound to the lipid monolayer. This resulted in an enhanced affinity for the lipid-anchored peptide at the surface relative to affinities for an analogous non-anchored peptide in solution. CONCLUSIONS: We have shown that the affinities of glycopeptide antibiotics for a model of the surface of a vancomycin-resistant bacterium are enhanced relative to affinities determined in free solution. We have also shown that antibiotics that have membrane anchors bind tightly to the model surface and that this feature is an important determinant of the ability of an antibiotic to kill vancomycin-resistant enterococci.     

Staudinger ligation: a peptide from a thioester and azide

[reaction: see text] The technique of native chemical ligation enables the total chemical synthesis of proteins. This method is limited, however, by an absolute requirement for a cysteine residue at the ligation juncture. Here, this restriction is overcome with a new chemical ligation method in which a phosphinobenzenethiol is used to link a thioester and azide. The product is an amide with no residual atoms.     

Construction of a protein-detection system using a loop peptide library with a fluorescence label

Construction of a novel protein-detection system was carried out using a designed peptide library with fluorescent labels based on loop structures. As a basic model study, detection of alpha-amylase using fluorescent-labeled peptides derived from an active loop of tendamistat was examined. The detection methods for proteins with immobilized peptides as well as peptides in solution have been successfully established. Based on these results, a loop peptide library that has various turn sequences grafted on a stable loop structure has been constructed. Various proteins with recognition patterns corresponding, for instance, to "protein fingerprints" could be detected using an immobilized peptide library. The present results suggest that the system can be applied to the development of a peptide microarray that behaves as a protein chip.     

Dielectric assembly of a collagen-model polypeptide in a triple helix

In expectation of the formation of a thermally stable, dielectric supramolecular assembly of a polypeptide with an amino acid sequence similar to that of type-2 collagen, a sequential polypeptide consisting of the repetition of the Pro-Pro-Gly tripeptide was synthesized by solid-phase synthesis. Column chromatography of an ethanol solution of (Pro-Pro-Gly)₁₀ NH₂ showed the presence of a double helix or triple helix of the polypeptide. The pattern of a circular dichroism (CD) spectrum of an ethanol solution of (Pro-Pro-Gly)₁₀ NH₂ was very similar to that of an aqueous solution of (Pro-Pro-Gly)₁₀ OH, strongly suggesting the presence of a triple helix of the polypeptide in ethanol. An oriented monolayer assembly of (Pro-Pro-Gly)₁₀ NH₂ was formed on a thin gold film. The distribution of surface unevenness and the surface potential were investigated with Kelvin force microscopy. The rising spots carried an electric potential from room temperature to 150 °C. The correspondence showed the usefulness of the oriented monolayer of the sequential polypeptide materials for thermally stable, dielectric nanodevices. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 3632–3639, 2003     

Pyridinium o-iodoxybenzoate as a Safe form of a Famous Oxidant

The stable pyridinium salt of o-iodoxybenzoic acid (PIBX) that is easy to obtain can serve as a convenient substitute of IBX as an oxidant. PIBX is safer, has neutral properties behaves as an equivalent to IBX in the oxidation of alcohols to ketones or aldehydes in polar solvents (DMF, DMSO), and provides higher oxidation rate in THF due to better solubility.     

Rearrangement of a pyranone to a benzothiazole

The conversion of 2-chloromethyl-5-methoxy-4H-pyran-4-one to 2-amino-5-hydroxy-6-methoxybenzothiazole hydrochloride under mild reaction conditions has been observed. The synthesis of the identical benzothiazole by an alternate unequivocal method is also reported.