A DFT study of the hydration of monophosphate complexes of iron (III),

A systematic theoretical DFT study of the bonding between the cation Fe³⁺ and the anion was carried out. The role of water ligands is presented. Several isomers with tetrahedral, bipyramidal and octahedral environments around the iron ion were investigated. 5-fold coordination of the Fe³⁺ cation is found when 5 and 6 water molecules are included. Calculated infrared spectra are also presented.     

DFT study and IR spectra of hexaphenoxycyclotriphosphazene generation phosphorus dendrimer

The infrared (150–3500 cm⁻¹) spectra have been recorded for hexaphenoxycyclotriphosphazene [NP(OPh)₂]₃ and all-D isotope specie. These compounds include a cyclotriphosphazene core and terminal phenoxy groups of elementoorganic dendrimers. The structural optimization and normal mode analysis are performed for elementoorganic dendrimer on the basis of the ab initio density functional theory. It is found that the dendrimer exists in a single stable conformation with slightly non-planar cyclotriphosphazene core. Relying on DFT calculations a complete vibrational assignment is proposed for different parts of the studied dendrimers. The softness of sulphur atom in the thiophosphoryl core to nucleophilic attack is higher than the softness of the atoms of the cyclotriphosphazene core. The reactivity of the core is less than that of terminal groups.     

Ab initio electronic and rovibrational structure of

The electronic structure of the ground state of has been investigated using relativistically-corrected CCSD(T) in conjunction with ANO-RCC (Mg) and aug-cc-pVQZ (H) basis sets. The molecular potential energy surface possessed minima corresponding to both ¹A₁ and equilibrium structures (with a ¹Σ⁺ transition state). The ¹A₁ structure possessed R_e and θ_e values of 2.0297 Å and of 22.09°, respectively. The higher-energy structure exhibited an R_e value of 2.1658 Å. Property surfaces were constructed to calculate rovibrational energies and spectral line intensities for the ground states of , (¹A′) MgHD²⁺ and . For the vibration ground state of , the vibration-averaged R_e and θ_e values were calculated to be 2.0209 Å and 22.53°, respectively. The A, B and C rotational constants were calculated to be 58.0, 2.21 and 2.11 cm⁻¹, respectively.     

Structures and properties of the tin-doped carbon clusters

A systemic density functional theory study of the tin-doped carbon clusters has been carried out using B3LYP method with TZP+ basis set. For each species, the electronic states, relative energies and geometries of various isomers are reported. Except for smaller SnC₂ and the largest , the Sn-terminated linear or quasi-linear isomer is the most stable structure for clusters. The electronic ground state is alternate between ³Σ (for n-odd member) and ¹Σ (for the n-even member) for linear SnC_n and invariably ²Π for linear and , except for SnC/SnC⁺/SnC⁻,, and . The incremental binding energy diagrams show that strong even–odd alternations in the cluster stability exist for both neutral SnC_n and anionic , with their n-even members being much more stable than the corresponding odd n − 1 and n + 1 ones, while for cationic , the alternation effect is less pronounced. These parity effects also reflect in the ionization potential and electron affinity curves. By comparing with the fragmentation energies accompanying various channels, the most favorable dissociation channel for each kind of the clusters are given. All these results are very similar to those obtained previously for the clusters.     

First principles study of the structure, electronic state and stability of cations

Structural and electronic properties of semiconductor binary microclusters cations have been investigated using the B3LYP-DFT method in the ranges of n=1, 2 and m=1–7. Full structural optimization, adiabatic ionization potentials calculation and frequency analysis are performed with the basis of 6-311+G(d). The charged-induced structural changes in these cations have been discussed. The strong As–As bond is also favored over Al–As bonds in the cations in comparison with corresponding neutral cluster. With As_m forming the base, adding Al atom(s) in different positions would find the stable structures of cations quickly and correctly. , , and are predicted to be species with high stabilities and possible to be produced experimentally.     

Scavenging of and OH radicals in concentrated HCl and NaCl aqueous solutions

In neutral and acidic aqueous solutions containing 2 mol L⁻¹ of Cl⁻, the decay of the solvated electron and the formation of ClOH⁻ and were studied by picosecond pulse radiolysis experiment. The rate constant for the reaction of and H₃O⁺ is 1.3 × 10¹⁰ L mol⁻¹ s⁻¹. The yield of the OH radical at 100 ps is estimated to be 5.0 × 10⁻⁷  mol  J⁻¹.     

Experimental and DFT study of the aza-Diels-Alder reaction between cyclopentadiene and protonated benzylimine derivated from glyoxylates

The Diels-Alder reaction of protonated N-benzyl imine of methyl glyoxylate with cyclopentadiene in different solvents gave mixtures of exo/endo adducts. The exo/endo selectivity of the reaction was elucidated by NMR experiments. Theoretical calculations by means of density functional theory (DFT) at the B3LYP/6-31G(d) level have also been performed to elucidate the molecular mechanism of this reaction. The DFT results suggest a highly asynchronous concerted mechanism, which in turn can explain the preferred exo stereoselectivity of the reaction. Inclusion of solvent effects enhances the exo selectivity, and this effect increases with the polarity of the solvent, in good agreement with the experimental findings.     

Vibrational relaxation on the mixed vibronic levels of the and states in all-trans-neurosporene as revealed by subpicosecond time-resolved, stimulated emission and transient absorption spectroscopy

In all-trans-neurosporene, whose level is lower than the level by one vibrational quantum, the following two steps of vibrational relaxation from the mixed vibronic states were identified, in the order, stimulated emission stimulated emission transient absorption. The stimulated emission patterns were simulated by the use of Franck–Condon factors in the transitions from the pair of mixed vibronic levels down to the ground vibronic levels. The vibronic levels of the mixed and state were characterized theoretically based on the diabatic approximation.     

Theoretical study on the structures and properties of LiCn, , and (n = 1–10) clusters

The lithium-doped carbon clusters LiC_n, , and (n = 1–10) have been investigated systemically with density functional theory (DFT) method at the B3LYP/6-311+G* level. According to the total energies of different kinds of isomers, the LiC_n, , and (n = 1–10) clusters have Li-terminated linear ground states structures, except for LiC₂, LiC₃, , and (n = 4–6). The incremental binding energies are evaluated to elucidate the stabilities of the clusters with different numbers of carbon atoms for neutral molecules, cations, and anions, respectively. Clear even–odd alternation effects are observed for the stability of the cationic clusters and anionic clusters, while for neutral LiC_n clusters the alternation effect is less pronounced. Similarly, the ionization potentials and electron affinities of LiC_n also express an obvious parity alternation. In addition, the most favorable dissociation channels are acquired according to the fragmentation energies accompanying various pathways.     

Synthesis, crystal structures and magnetic properties of trinuclear oxo-centered homo- and mixed-valence manganese pivalate complexes with imidazole (Im) and 1-methylimidazole (1-MeIm): and

Two new μ₃-oxo-centered trinuclear manganese complexes, one of them a homo-valence (1) pivalate complex and the other a mixed-valence (2) pivalate complex (where Im = imidazole, 1-MeIm = 1-methylimidazole), have been synthesized and characterized by IR spectroscopy, thermogravimetric analysis, X-ray crystallography and magnetochemistry. Complexes 1 and 2 are μ₃-oxo-trinuclear compounds with the three manganese atoms bridged by six pivalate groups. At each axial position there is an Im (1) or 1-MeIm (2) molecule. In both compounds, the manganese coordination geometry is slightly distorted octahedral, consisting of the oxygen of the central triangle, four oxygen atoms from bridging pivalate ligands, and a terminal Im or 1-MeIm nitrogen atom. The crystal packing of 1 involves hydrogen bonding between complex cations [Mn₃O(Piv)₆(Im)₃]⁺ and outersphere pivalate ions, whereas in compound 2 interactions of the C–Hπ type, formed by both the aromatic and methyl C–H groups of 1-MeIm molecules, are present. Magnetic studies reveal that both compounds represent antiferromagnetically coupled, spin-frustrated triangular systems exhibiting weak to moderate exchange coupling constants.     

Selecting high stability water clusters by examining locations of free OH bonds: Application in the study of clusters

Computational studies on water clusters can be quite challenging, especially when an irregular cage with non-equivalent oxygen sites are considered which may yield a large number of starting geometries that differ in relative positions of non-H-bonding H (NHB H, free OH) atoms. A detailed study on water octamers suggests that the fewest number of NHB H atoms on neighboring oxygen sites yields the most stable neutral isomer followed by those with increasing number of NHB H atoms on adjacent sites. The least stable cluster has all the NHB H atoms around a ring. By considering a regular cage structure and minimum number of NHB H atoms on adjacent sites, one can readily identify a limited number of starting geometries that are optimized to highly stable isomers. This method has been verified in the identification of the most stable isomer of (H₂O)₈ cubic cage and (H₂O)₂₀ dodecahedral cage. The same method has been applied in the study of cluster isomers.     

The first platinum(IV) complexes involving aromatic cytokinins or cyclin-dependent kinase inhibitors derived from 6-benzylaminopurine: X-ray structures of

A series of Pt(IV) complexes with cytokinins or CDK-inhibitors derived from 6-benzylaminopurine (Bap) of the composition [Pt^IV(LH⁺)Cl₅] (1–14), where LH⁺ stands for protonated form of the Bap derivative (1–12), Boh = 6-(benzylamino)-2-[(3-hydroxypropyl)amino]-9-isopropylpurine, bohemine (13) and Ros = 6-(benzylamino)-2-[(1-hydroxymethylpropyl)amino]-9-isopropylpurine, roscovitine (14), have been prepared.They have been fully characterized by microanalysis, conductivity, FT-IR, ¹H, ¹³C, ¹⁵N and ¹⁹⁵Pt NMR and ES+ mass spectroscopy.It has been found that the cytokinin molecule is coordinated via N9 atom to platinum(IV) and N1, N7-protonated in case of complexes 1–12, and N7 coordinated and N1-protonated in case of complexes with CDK inhibitors (13 and 14).Predicted molecular geometries of the complexes have been supported by DFT calculations at the B3LYP level with the 6-311+G^**/LANL2DZ and aug-cc-pVDZ/LANL2DZ basis sets.All of the compounds have been tested in vitro for their cytotoxicity against four human cancer cell lines: malignant melanoma (G361), osteogenic sarcoma (HOS), chronic myelogenous erythroleukemia (K562) and breast adenocarcinoma (MCF7).The best result has been achieved for complex 14, where IC₅₀ = 17 μM against K562. The molecular structures of two ionic pair compounds have been determined by a single crystal X-ray analysis.     

Photoinduced multi-mode quantum dynamics of pyrrole at the – conical intersections

The photoinduced dynamics of pyrrole at the – S₀ and – S₀ conical intersections has been investigated by multi-mode time-dependent quantum wave-packet calculations. Diabatic potential-energy surfaces have been constructed for both conical intersection using accurate multi-reference ab initio electronic-structure calculations. In addition to the NH stretching coordinate, the three (four) symmetry-allowed coupling modes of A₂ (B₁) symmetry have been considered for the – S₀ (– S₀) conical intersections. Wave-packet dynamics calculations have been performed for three-dimensional models, taking account of the two dominant coupling modes of each conical intersection. The electronic population-transfer processes at the conical intersections, the branching ratio for the dissociation to the ground and excited states of the pyrrolyl radical, and their dependence on the initial preparation of the system have been investigated. It is shown that the excitation of the NH stretching mode strongly enhances the photodissociation rate, while the excitation of the strongest coupling mode has a pronounced effect on the branching ratio of the photodissociation process. Although the inclusion of the second (weaker) coupling mode has little effect on the electronic population dynamics, it leads to interesting changes of the nodal pattern of the wave packet at the conical intersections. The calculations provide insight into the effect of the multiple coupling modes on the process of direct photodissociation through a conical intersection.     

Excess thermodynamic properties, and for the binary systems {1,2-dichloropropane + 2-alkoxyethanols} at T = 298.15 K

This article presents the experimental data of and , obtained at T = 298.15 K and atmospheric pressure, for four binary systems composed of 1,2-dichloropropane (1,2-DCP) and four 2-alkoxyethanols. The 2-alkoxyethanols are 2-methoxyethanol (2-ME), 2-ethoxyethanol (2-EE), 2-propoxyethanol (2-PE) and 2-butoxyethanol (2-BE). The of the mixture has been shown positive for 2-ME, ‘s-shaped’ for all remaining systems, being negative at low and positive at high mole fraction of 1,2-DCP. The values for all binary mixtures are also shown both positive at low and negative at high mole fraction of 1,2-DCP. The experimental results of and were fitted to Redlich–Kister equation to correlate the composition dependence of both excess properties. In this work, data were also used to test the suitability of thermodynamic models (Wilson, NRTL, and UNIQUAC equations) based on local-composition theory. The results have been qualitatively discussed in terms of the polarity, self-association, and hydrogen bond among molecules.     

DFT study of electronic structure and geometry of anionic silver clusters (n = 11, 12, 17)

Based on both total energy calculations and comparison of experimental and calculated characteristics of photoelectron spectra (PHES), the structural assignment of clusters and has been made using DFT model with recently developed S2LYP functional. The calculated characteristics of PHES for the assigned structures are in excellent agreement with the experimental ones. The electronic structure, geometry and energetic characteristics of low-lying isomers have also been studied. The calculated geometrical parameters of and clusters as well as the geometries of earlier established clusters have been compared with the geometrical characteristics of anionic sodium clusters. The structures of anionic silver and sodium clusters have been found to be very similar. The difference has been observed only for . Based on similarity of the geometries of silver and sodium clusters as well as on the comparison of calculated and experimental characteristics of PHES, the geometry of cluster has been assigned.     

Proton and protonic entities in solid heteropoly compounds: An ab initio calculation of the environmental effect on the ion

Systematic experimental investigations of heteropoly compounds, particularly their structure and activity, led to the conclusion that most of their characteristics are governed by the presence of protons and protonic entities. Special attention has been paid to two forms of 12-tungstophosphoric acid: hexahydrate (WPA-6) and dehydrated phase (WPA-0). It was postulated that in WPA-6 dynamic equilibrium of protonic entities exists, and that dehydrated phase is stabilized by protons. To confirm the role of the “free protons” or “proton gas” derived on the basis of thermal, structural and spectroscopic experimental studies, we carried out also ab initio calculations on a number of systems containing ion. We were not able to perform direct calculations on the real systems investigated experimentally since the structure of heteropoly compounds is too complex. However, it has been found that ion in WPA-6 definitely is not planar and the results obtained indirectly support the postulated dynamic equilibrium, i.e. possibility of existing of free protons.     

Site-selective formation of N-arylmethylimidazoles and C-arylimines in the reaction of 4,5-diamino-2,1,3-benzothiadiazole with aromatic aldehydes

Regioselective formation of N-arylmethylimidazoles and C-arylimines was found in the reaction of 4,5-diamino-2,1,3-benzothiadiazole with selected aromatic aldehydes. The regiochemistry of the reaction products was confirmed by single crystal X-ray analysis. Gibbs free energy calculation using DFT method at the B3LYP/6-31G(d) level supports the regio-selectivity observed. The 4-imine obtained in the reaction of 4,5-diamino-2,1,3-benzothiadiazole with pyrene-1-carboxaldehyde showed an unusually low magnetic field shift of the imine proton that was reproduced by molecular calculations.     

The structure of glibenclamide in the solid state

The structure of glibenclamide, 5‐chloro‐N‐(2‐{4‐[(cyclohexylamino)carbonyl] aminosulfonyl}phenyl) ethyl)‐2‐methoxybenzamide, an important antidiabetic drug, has been studied both in solution and in the solid state by a combination of NMR spectroscopy and theoretical calculations. The possibility that glibenclamide suffers a tautomerization under melting to afford a desmotrope was rejected. Copyright © 2012 John Wiley & Sons, Ltd.     

Synthesis,Crystal Structure and Spectroscopic Properties of 1,2-Benzothiazine Derivatives:An Experimental and DFT Study

1,2-Benzothiazine derivatives methyl 3-methoxy-4-oxo-3,4-dihydro-2H-benzo[e] [1,2]thiazine-3-carboxylate 1,1-dioxide(1) and methyl 2-ethyl-3-hydroxy-4-oxo-3,4-dihydro-2Hbenzo[e][1,2]thiazine-3-carboxylate 1,1-dioxide(2) were synthesized, and characterized by spectroscopic techniques; 1H-NMR and infrared(IR) spectroscopy. Crystals of 1 and 2 were grown by slow evaporation of methanol and ethyl acetate, respectively and their crystal structures were investigated by single-crystal X-ray diffraction analysis. Geometric properties were calculated by the B3 LYP method of density functional theory(DFT) at the 6-31G+(d) basis set to compare with the experimental data. Simulated properties were found in strong agreement with the experimental ones. Intermolecular forces have also been modeled in order to investigate the strength of packing and strong hydrogen bonding was observed in both compounds 1 and 2. Electronic properties such as Ionization Potential(IP), Electron Affinities(EA) and coefficients of the highest occupied molecular orbital(HOMO) and the lowest unoccupied molecular orbital(LUMO) of com- pounds 1 and 2 were simulated for the first time.