Cocrystals of 6‐propyl‐2‐thiouracil: N—H...O versus N—H...S hydrogen bonds

In order to investigate the relative stability of N—H...O and N—H...S hydrogen bonds, we cocrystallized the antithyroid drug 6‐propyl‐2‐thiouracil with two complementary heterocycles. In the cocrystal pyrimidin‐2‐amine–6‐propyl‐2‐thiouracil (1/2), C₄H₅N₃·2C₇H₁₀N₂OS, (I), the `base pair' is connected by one N—H...S and one N—H...N hydrogen bond. Homodimers of 6‐propyl‐2‐thiouracil linked by two N—H...S hydrogen bonds are observed in the cocrystal N‐(6‐acetamidopyridin‐2‐yl)acetamide–6‐propyl‐2‐thiouracil (1/2), C₉H₁₁N₃O₂·2C₇H₁₀N₂OS, (II). The crystal structure of 6‐propyl‐2‐thiouracil itself, C₇H₁₀N₂OS, (III), is stabilized by pairwise N—H...O and N—H...S hydrogen bonds. In all three structures, N—H...S hydrogen bonds occur only within R₂²(8) patterns, whereas N—H...O hydrogen bonds tend to connect the homo‐ and heterodimers into extended networks. In agreement with related structures, the hydrogen‐bonding capability of C=O and C=S groups seems to be comparable.     

Pentazol‐Derivate und daraus entstehende Azide: [O3S—p‐C6H4—N5]— und [O3S—p‐C6H4—N3]— als Kalium‐Kronenether‐Salze

Pentazole Derivates and Azides Formed from them: Potassium‐Crown‐Ether Salts of [O₃S—p‐C₆H₄—N₅]^— and [O₃S—p‐C₆H₄—N₃]^{— —}O₃S—p‐C₆H₄—N₂⁺ was reacted with sodium azide at —50 °C in methanol, yielding a mixture of 4‐pentazolylbenzenesulfonate and 4‐azidobenzenesulfonate (amount‐of‐substance ratio 27:73 according to NMR). By addition of KOH in methanol at —50 °C a mixture of the potassium salts K[O₃S—p‐C₆H₄—N₅] and K[O₃S—p‐C₆H₄—N₃] was precipitated (ratio 60:40). A solution of this mixture along with 18‐crown‐6 in tetrahydrofurane yielded the crystalline pentazole derivate [THF‐K‐18‐crown‐6][O₃S—p‐C₆H₄—N₅]·THF by addition of petrol ether at —70 °C. From the same solution upon evaporation and redissolution in THF/petrol ether the crystalline azide [THF‐K‐18‐crown‐6][O₃S—p‐C₆H₄—N₃]·THF was obtained. A solution of the latter in chloroform/toluene under air yielded [K‐18‐crown‐6][O₃S—p‐C₆H₄—N₃]·1/3H₂O. According to their X‐ray crystal structure determinations [THF‐K‐18‐crown‐6][O₃S—p‐C₆H₄—N₅]·THF and [THF‐K‐18‐crown‐6][O₃S—p‐C₆H₄—N₃]·THF have the same kind of crystal packing. Differences worth mentioning exist only for the atomic positions of the pentazole ring as compared to the azido group and for one THF molecule which is coordinated to the potassium ion; different orientations of the THF molecule take account for the different space requirements of the N₅ and the N₃ group. In [K‐18‐crown‐6][O₃S—p‐C₆H₄—N₃]·1/3H₂O there exists one unit consisting of one [K‐18‐crown‐6]⁺ and one [O₃S‐C₆H₄—N₃]^— ion and another unit consisting of two [O₃S‐C₆H₄—N₃]^— ions joined via two [K‐18‐crown‐6]⁺ ions and one water molecule. The rate constants for the decomposition [O₃S‐C₆H₄—N₅]^— → [O₃S‐C₆H₄—N₃]^— + N₂ in methanol were determined at 0 °C and —20 °C.     

Electronic structure,novel synthesis,and O—H...O and C—H...O interactions in two 6‐oxopiperidine‐2‐carboxylic acid derivatives

Molecules of (S)‐6‐oxo‐1‐(thiophen‐2‐ylmethyl)piperidine‐2‐carboxylic acid, C₁₁H₁₃NO₃S, crystallize as single enantiomers in the space group P2₁ and the thiophene ring is disordered over two positions, while (S)‐6‐oxo‐1‐(thiophen‐3‐ylmethyl)piperidine‐2‐carboxylic acid, C₁₁H₁₃NO₃S, crystallizes as a single enantiomer in the space group P2₁2₁2₁. Their absolute configurations were confirmed by anomalous dispersion effects in diffraction measurements on the crystals. The molecules of each compound are linked by a combination of strong O—H...O hydrogen bonds and weak C—H...O interactions, resulting in two‐ and three‐dimensional networks, respectively, in the crystal structures.     

(2R*,4S*)‐2‐(Pyridin‐3‐yl)‐2,3,4,5‐tetrahydro‐1H‐1‐benzazepin‐4‐ol: a three‐dimensional framework built from O—H...N,C—H...O and C—H...π(arene) hydrogen bonds

The title compound, C₁₅H₁₆N₂O, crystallizes in the space group P2₁2₁2₁ with Z′ = 1. The seven‐membered ring adopts a chair‐type conformation with the hydroxy and pyridyl substituents in equatorial sites. Molecules are linked into a three‐dimensional framework structure by a combination of O—H...N, C—H...O and C—H...π(arene) hydrogen bonds, but N—H...O and N—H...π(arene) interactions are absent from the structure. Comparisons are made with some related compounds.     

N—H...O and N—H...N interactions in three pyran derivatives

The three pyran structures 6‐methylamino‐5‐nitro‐2,4‐diphenyl‐4H‐pyran‐3‐carbonitrile, C₁₉H₁₅N₃O₃, (I), 4‐(3‐fluorophenyl)‐6‐methylamino‐5‐nitro‐2‐phenyl‐4H‐pyran‐3‐carbonitrile, C₁₉H₁₄FN₃O₃, (II), and 4‐(4‐chlorophenyl)‐6‐methylamino‐5‐nitro‐2‐phenyl‐4H‐pyran‐3‐carbonitrile, C₁₉H₁₄ClN₃O₃, (III), differ in the nature of the aryl group at the 4‐position. The heterocyclic ring in all three structures adopts a flattened boat conformation. The dihedral angle between the pseudo‐axial phenyl substituent and the flat part of the pyran ring is 89.97 (1)° in (I), 80.11 (1)° in (II) and 87.77 (1)° in (III). In all three crystal structures, a strong intramolecular N—H...O hydrogen bond links the flat conjugated H—N—C=C—N—O fragment into a six‐membered ring. In (II), molecules are linked into dimeric aggregates by N—H... O(nitro) hydrogen bonds, generating an R₂²(12) graph‐set motif. In (III), intermolecular N—H...N and C—H...N hydrogen bonds link the molecules into a linear chain pattern generating C(8) and C(9) graph‐set motifs, respectively.     

Naphthalene‐1,6‐diol: a three‐dimensional framework built from O—H...O,O—H...π and C—H...O hydrogen bonds

The asymmetric unit of the title compound, C₁₀H₈O₂, contains two practically planar symmetry‐independent molecules linked by one O—H...O hydrogen bond. Molecules are further linked into a three‐dimensional network, which is built from R₆⁶(36), R₆⁶(18), R₆⁶(30) and R₄⁴(26) rings formed by the combined effect of three O—H...O and one C—H...O hydrogen bond. This network is additionally stabilized by an O—H...π interaction.     

Novel π2s+π2a Electrocyclization of Triethylenic‐Malonic Acids Exemplified for a One‐Pot Synthesis of New γ‐Dilactones cis‐Fused with a Cyclopentene

A new, easy and rapid synthesis of γ‐dilactones is cis‐fused with a cyclopentenic ring via cyclization of 7‐chlorotriethylenic‐malonic acids. The key step implicates an intramolecular cyclization to a cyclopentenyl cation, according to an electrocyclic π_2s + π_2a conrotatory process. This cyclopentenyl cation led to unstable γ‐lactones intermediates that are rearrange to more stable isomers. δ‐lactones (6Z and 6E‐(3‐chlorobut‐2‐en‐2‐yl)‐5‐methyl‐3,6‐dihydro‐2H‐pyran‐2‐one) were obtained as secondary products. Mechanistic pathways were considered. The structures of the newly synthesized compounds were established by elemental and spectral data.     

N—H...O and O—H...O hydrogen‐bonded supramolecular networks in 4‐chloroanilinium, 2‐hydroxyanilinium and 3‐hydroxyanilinium hydrogen phthalates

The title salts, 4‐chloroanilinium hydrogen phthalate (PCAHP), C₆H₇ClN⁺·C₈H₅O₄⁻, 2‐hydroxyanilinium hydrogen phthalate (2HAHP), C₆H₈NO⁺·C₈H₅O₄⁻, and 3‐hydroxyanilinium hydrogen phthalate (3HAHP), C₆H₈NO⁺·C₈H₅O₄⁻, all crystallize in the space group P2₁/c. The asymmetric unit of 2HAHP contains two independent ion pairs. The hydrogen phthalate ions of 2HAHP and 3HAHP show a short intramolecular O—H...O hydrogen bond, with O...O distances ranging from 2.3832 (15) to 2.3860 (14) Å. N—H...O and O—H...O hydrogen bonds, together with short C—H...O contacts in PCAHP and 3HAHP, generate extended hydrogen‐bond networks. PCAHP forms a two‐dimensional supramolecular sheet extending in the (100) plane, whereas 2HAHP has a supramolecular chain running parallel to the [100] direction and 3HAHP has a two‐dimensional network extending parallel to the (001) plane.     

5‐Amino‐1‐benzoyl‐3‐methylpyrazole: complex sheets built from N—H...N,C—H...O and C—H...π(arene) hydrogen bonds

Molecules of the title compound [systematic name: (5‐amino‐3‐methylpyrazol‐1‐yl)(phenyl)methanone], C₁₁H₁₁N₃O, contain an intramolecular hydrogen bond. The molecules are linked into sheets by a combination of N—H...N, C—H...O and C—H...π(arene) hydrogen bonds. Comparisons are made with the hydrogen‐bonded structures of some related compounds.     

Five pseudopolymorphs of 6‐amino‐2‐thiouracil: absence of N—H...S hydrogen bonds

In order to study the preferred hydrogen‐bonding pattern of 6‐amino‐2‐thiouracil, C₄H₅N₃OS, (I), crystallization experiments yielded five different pseudopolymorphs of (I), namely the dimethylformamide disolvate, C₄H₅N₃OS·2C₃H₇NO, (Ia), the dimethylacetamide monosolvate, C₄H₅N₃OS·C₄H₉NO, (Ib), the dimethylacetamide sesquisolvate, C₄H₅N₃OS·1.5C₄H₉NO, (Ic), and two different 1‐methylpyrrolidin‐2‐one sesquisolvates, C₄H₅N₃OS·1.5C₅H₉NO, (Id) and (Ie). All structures contain R₂¹(6) N—H...O hydrogen‐bond motifs. In the latter four structures, additional R₂²(8) N—H...O hydrogen‐bond motifs are present stabilizing homodimers of (I). No type of hydrogen bond other than N—H...O is observed. According to a search of the Cambridge Structural Database, most 2‐thiouracil derivatives form homodimers stabilized by an R₂²(8) hydrogen‐bonding pattern, with (i) only N—H...O, (ii) only N—H...S or (iii) alternating pairs of N—H...O and N—H...S hydrogen bonds.     

Intermolecular C—H...O and C—H...X interactions in substituted spiroacenaphthylene structures

In the three spiroacenaphthylene structures 5′′‐[(E)‐2,3‐dichlorobenzylidene]‐7′‐(2,3‐dichlorophenyl)‐1′′‐methyldispiro[acenaphthylene‐1,5′‐pyrrolo[1,2‐c][1,3]thiazole‐6′,3′′‐piperidine]‐2,4′′‐dione, C₃₅H₂₆Cl₄N₂O₂S, (I), 5′′‐[(E)‐4‐fluorobenzylidene]‐7′‐(4‐fluorophenyl)‐1′′‐methyldispiro[acenaphthylene‐1,5′‐pyrrolo[1,2‐c][1,3]thiazole‐6′,3′′‐piperidine]‐2,4′′‐dione, C₃₅H₂₈F₂N₂O₂S, (II), and 5′′‐[(E)‐4‐bromobenzylidene]‐7′‐(4‐bromophenyl)‐1′′‐methyldispiro[acenaphthylene‐1,5′‐pyrrolo[1,2‐c][1,3]thiazole‐6′,3′′‐piperidine]‐2,4′′‐dione, C₃₅H₂₈Br₂N₂O₂S, (III), the substituted aryl groups are 2,3‐dichloro‐, 4‐fluoro‐ and 4‐bromophenyl, respectively. The six‐membered piperidine ring in all three structures adopts a half‐chair conformation, the thiazolidine ring adopts a slightly twisted envelope and the pyrrolidine ring an envelope conformation; in each case, the C atom linking the rings is the flap atom. In all three structures, weak intramolecular C—H...O interactions are present. The crystal packing is stabilized through a number of intermolecular C—H...O and C—H...X interactions, where X = Cl in (I) and F or S in (II), and C—H...O interactions are observed predominantly in (III). In all three structures, molecules are linked through centrosymmetric ring motifs, further tailored through a relay of C—H...X [Cl in (I), Br in (II) and O in (III)] interactions.     

Octyl 1‐(5‐tert‐butyl‐1H‐pyrazol‐3‐yl)‐2‐(4‐chlorophenyl)‐1H‐benzimidazole‐5‐carboxylate: complex sheets built from N—H...N,C—H...N and C—H...O hydrogen bonds

In the title compound, C₂₉H₃₅ClN₄O₂, the bond lengths provide evidence for aromatic delocalization in the pyrazole ring but bond fixation in the fused imidazole ring, and the octyl chain is folded, rather than adopting an all‐trans chain‐extended conformation. A combination of N—H...N, C—H...N and C—H...O hydrogen bonds links the molecules into sheets, in which the hydrogen bonds occupy the central layer with the tert‐butyl and octyl groups arranged on either side, such that the closest contacts between adjacent sheets involve only the octyl groups. Comparisons are made with the supramolecular assembly in some simpler analogues.     

One‐dimensional C—H...N hydrogen‐bonded polymers in flexible tetrapyridyl systems

In N,N,N′,N′‐tetrakis(2‐pyridylmethyl)propane‐1,3‐diamine, C₂₇H₃₀N₆, (I), and N,N,N′,N′‐tetrakis(2‐pyridylmethyl)butane‐1,4‐diamine, C₂₈H₃₂N₆, (II), the twofold rotational symmetry of (I) favours the formation of a one‐dimensional hydrogen‐bonded polymer with two columns of C—H...N hydrogen bonds, while the inversion symmetry of (II) allows the formation of a one‐dimensional hydrogen‐bonded polymer stabilized by four columns of C—H...N hydrogen bonds. The possible role played by the chain length of the linking alkanediamine in determining the type of supramolecular architecture in this series of compounds is discussed.     

[Pd(Cl)2{P(NC5H10)(C6H11)2}2]—A Highly Effective and Extremely Versatile Palladium‐Based Negishi Catalyst that Efficiently and Reliably Operates at Low Catalyst Loadings

[Pd(Cl)₂{P(NC₅H₁₀)(C₆H₁₁)₂}₂] ( 1 ) has been prepared in quantitative yield by reacting commercially available [Pd(cod)(Cl)₂] (cod=cyclooctadiene) with readily prepared 1‐(dicyclohexylphosphanyl)piperidine in toluene under N₂ within a few minutes at room temperature. Complex 1 has proved to be an excellent Negishi catalyst, capable of quantitatively coupling a wide variety of electronically activated, non‐activated, deactivated, sterically hindered, heterocyclic, and functionalized aryl bromides with various (also heterocyclic) arylzinc reagents, typically within a few minutes at 100 °C in the presence of just 0.01 mol % of catalyst. Aryl bromides containing nitro, nitrile, ether, ester, hydroxy, carbonyl, and carboxyl groups, as well as acetals, lactones, amides, anilines, alkenes, carboxylic acids, acetic acids, and pyridines and pyrimidines, have been successfully used as coupling partners. Furthermore, electronic and steric variations are tolerated in both reaction partners. Experimental observations strongly indicate that a molecular mechanism is operative.     

C—H...O hydrogen‐bonding and C—H...π interactions in 3‐(4‐fluorophenyl)‐1,5,7‐trimethyl‐1,2,3,4‐tetrahydropyrido[2,3‐d]pyrimidine‐2,4‐dione

In the title compound, C₁₆H₁₄FN₃O₂, a diverse set of weak intermolecular C—H...π, π–π and C—H...O interactions link the molecules into sheets. The C—H...O interactions generate centrosymmetric rings with a graph‐set motif of R₂²(14) and chains with a C(8) motif.     

Intermolecular C—H...π interactions in 1,5‐diphenyl‐3‐(2‐pyridyl)‐2‐pyrazoline

The title compound, C₂₀H₁₇N₃, is a derivative of 1,3,5‐triaryl‐2‐pyrazoline and can act as an N,N′‐bidentate ligand. This molecule features strong fluorescence that can be explained by an extended pyridyl–C=N—N–phenyl system. The three‐dimensional structure is formed by means of an extended network of weak C—H...π hydrogen bonds supported by π–π interactions.     

Metabolism of Deuterated Isomeric 6,7‐Dihydroxydodecanoic Acids in Saccharomyces cerevisiae – Diastereo‐ and Enantioselective Formation and Characterization of 5‐Hydroxydecano‐4‐lactone (=4,5‐Dihydro‐5‐(1‐hydroxyhexyl)furan‐2(3H)‐one) Isomers

The chemical synthesis of deuterated isomeric 6,7‐dihydroxydodecanoic acid methyl esters 1 and the subsequent metabolism of esters 1 and the corresponding acids 1a in liquid cultures of the yeast Saccharomyces cerevisiae was investigated. Incubation experiments with (6R,7R)‐ or (6S,7S)‐6,7‐dihydroxy(6,7‐²H₂)dodecanoic acid methyl ester ((6R,7R)‐ or (6S,7S)‐(6,7‐²H₂)‐ 1 , resp.) and (±)‐threo‐ or (±)‐erythro‐6,7‐dihydroxy(6,7‐²H₂)dodecanoic acid ((±)‐threo‐ or (±)‐erythro‐(6,7‐²H₂)‐ 1a , resp.) elucidated their metabolic pathway in yeast (Tables 1–3). The main products were isomeric ²H‐labeled 5‐hydroxydecano‐4‐lactones 2 . The absolute configuration of the four isomeric lactones 2 was assigned by chemical synthesis via Sharpless asymmetric dihydroxylation and chiral gas chromatography (Lipodex ^® E). The enantiomers of threo‐ 2 were separated without derivatization on Lipodex ^® E; in contrast, the enantiomers of erythro‐ 2 could be separated only after transformation to their 5‐O‐(trifluoroacetyl) derivatives. Biotransformation of the methyl ester (6R,7R)‐(6,7‐²H₂)‐ 1 led to (4R,5R)‐ and (4S,5R)‐(2,5‐²H₂)‐ 2 (ratio ca. 4 : 1; Table 2). Estimation of the label content and position of (4S,5R)‐(2,5‐²H₂)‐ 2 showed 95% label at C(5), 68% label at C(2), and no ²H at C(4) (Table 2). Therefore, oxidation and subsequent reduction with inversion at C(4) of 4,5‐dihydroxydecanoic acid and transfer of ²H from C(4) to C(2) is postulated. The 5‐hydroxydecano‐4‐lactones 2 are of biochemical importance: during the fermentation of Streptomyces griseus, (4S,5R)‐ 2 , known as L‐factor, occurs temporarily before the antibiotic production, and (?)‐muricatacin (=(4R,5R)‐5‐hydroxy‐heptadecano‐4‐lactone), a homologue of (4R,5R)‐ 2 , is an anticancer agent.     

O‐Phenyl (triphenylphosphoniomethyl)phosphonate phenol solvate: supramolecular structure generated by O—H...O,C—H...O and C—H...π(arene) hydrogen bonds

The title compound, C₂₅H₂₂O₃P₂·C₆H₆O, has a zwitterionic betaine‐like structure and crystallizes as a phenol solvate. The two molecular components are held together by an almost linear intermolecular O—H...O hydrogen bond. The structure also contains three weak C—H...O and two C—H...π(arene) interactions.     

1‐(2‐Aminophenyl)‐3‐(4‐pyridyl)prop‐2‐en‐1‐one: a three‐dimensional framework structure built from N—H...N,C—H...O and C—H...π(arene) hydrogen bonds

The intramolecular dimensions of the title compound, C₁₄H₁₂N₂O, provide evidence for a polarized electronic structure. The molecule, which is almost completely planar, contains an intramolecular N—H...O hydrogen bond, and the molecules are linked by a combination of N—H...N, C—H...O and C—H...π(arene) hydrogen bonds to form a three‐dimensional framework structure.     

4‐Iodo­anilinium 3‐nitro­phthalate(1–): tripartite sheets built from O—H...O and N—H...O hydrogen bonds

In the title compound, 4‐iodoanilinium 2‐carboxy‐6‐nitrobenzoate, C₆H₇IN⁺·C₈H₄NO₆⁻, the anions are linked by an O—H...O hydrogen bond [H...O = 1.78 Å, O...O = 2.614 (3) Å and O—H...O = 171°] into C(7) chains, and these chains are linked by two two‐centre N—H...O hydrogen bonds [H...O = 1.86 and 1.92 Å, N...O = 2.700 (3) and 2.786 (3) Å, and N—H...O = 153 and 158°] and one three‐centre N—H...(O)₂ hydrogen bond [H...O = 2.02 and 2.41 Å, N...O = 2.896 (3) and 2.789 (3) Å, N—H...O = 162 and 105°, and O...H...O = 92°], thus forming sheets con­taining R(6), R(8), R(13) and R(18) rings.