TDDFT Study of the Electronic Structure,Absorption and Emission Spectra of the Light Emitters of the Amazing Firefly Bioluminescence and Solvation Effects on the Spectra

The ground and excited state properties of luciferin (LH₂) and oxyluciferin (OxyLH₂), the bioluminescent chemicals in the firefly, have been characterized using density functional theory (DFT) and time dependent DFT (TDDFT) methods. The effects of solvation on the electronic absorption and emission spectra of luciferin and oxyluciferin were predicted with a self‐consistent isodensity polarized continuum model of the solvent using TDDFT. The S₀→S₁ vertical excitation energies in the gas phase and in water were obtained. Optimizations of the excited state geometries permitted the first predictions of the fluorescence spectra for these biologically important molecules. Shifts in both of the absorption and emission spectra on proceeding from the gas phase to aqueous solution were also predicted.     

Vibrationally Resolved Absorption and Fluorescence Spectra of Firefly Luciferin: A Theoretical Simulation in the Gas Phase and in Solution

Firefly bioluminescence has been applied in several fields. However, the absorption and fluorescence spectra of the substrate, luciferin, have not been observed at the vibrational level. In this study, the vibrationally resolved absorption and fluorescence spectra of firefly luciferin (neutral form LH₂, phenolate ion form LH^? and dianion form L^2?) are simulated using the density functional method and convoluted by a Gaussian function, with displacement, distortion and Duschinsky effects in the framework of the Franck–Condon approximation. Both neutral and anionic forms of the luciferin are considered in the gas phase and in solution. The simulated spectra have desired band maxima with the experimental ones. The vibronic structure analysis reveals that the features of the most contributive vibrational modes coincide with the key geometry‐changing region during transition between the ground state and the first singlet excited state.     

Predictions of the electronic absorption and emission spectra of luciferin and oxyluciferins including solvation effects

The ground and excited state properties of luciferin (LH(2)) and oxyluciferin (OxyLH(2)), the bioluminescent chemical in the firefly, have been characterized using the configuration interaction singles (CIS) and time dependent density functional (TDDFT) methods. The effects of solvation on the electronic absorption and emission spectra of luciferin and oxyluciferin are predicted with a self-consistent isodensity polarized continuum model of the solvent using both the configuration interaction singles model and time dependent density functional theory. The S(0)-->S(1) vertical excitation energies in the gas phase and in water are obtained with both methods. Optimizations of the excited state geometries permit the first predictions of the fluorescence spectra for these biologically important molecules. Shifts in both the absorption and emission spectra on proceeding from the gas phase to aqueous solution also are predicted.     

Theoretical Study of Fluorescence Spectra Utilizing the pKa Values of Acids in Their Excited States

Assignment of the fluorescence spectrum of firefly luciferin in aqueous solutions was achieved by utilizing not only emission energies but also theoretical absorption spectra and relative concentrations as estimated by pK_a values. Calculated Gibbs free energies were utilized to estimate pK_a values. These pK_a values were then corrected by employing the experimental results. It was previously thought that the main peak near 550 nm observed in the experimental fluorescence spectra at all pH values corresponds to emission from the first excited state of the luciferin dianion [Ando et al. (2010) Jpn. J. Appl. Phys. 49, 117002–117008]. However, we found that the peak near 550 nm at low pH corresponds to emission from the first excited state of the phenolate monoanion of luciferin. Furthermore, we found that the causes of the red fluorescence at pH 1–2 are not only the emission from phenol monoanion but also the emission from the protonated species at nitrogen atom in the thiazoline ring of dianion.     

Ab initio investigation on the structures and spectra of the firefly luciferin

The ground state (S0) geometry of the firefly luciferin (LH2) was optimized by both DFT B3LYP and CASSCF methods. The vertical excitation energies (Tv) of three low-lying states (S1, S2, and S3) were calculated by TD-DFT B3LYP//CASSCF method. The S1 geometry was optimized by CASSCF method. Its Tv and the transition energy (Te) were calculated by MS-CASPT2//CASSCF method. Both the TD-DFT and MS-CASPT2 calculated S1 state Tv values agree with the experimental one. The IPEA shift greatly affects the MS-CASPT2 calculated Tv values. Some important excited states of LH2 and oxyluciferin (oxyLH2) are charge-transfer states and have more than one dominant configuration, so for deeply researching the firefly bioluminescence, the multireference calculations are desired.     

Luminescent Eu(III) and Gd(III) trisbipyridine cryptates: experimental and theoretical study of the substituent effects.

Synthesis, absorption spectra and luminescebce properties of a series of lanthanide trisbipyridine cryptates Ln within R-Bpy x R-Bpy x R-Bpy, where Ln = Eu, Gd and R = H, COOH, COOCH3, CONH(CH2)2NH2 are described. Comparison of the unsubstituted parent compound with the substituted compounds shows that bipyridine substitution doesn't alter significantly the photophysical properties of the lanthanide cryptate. The absorption maximum is slightly red-shifted when three bipyridines are substituted, whereas substituting one bipyridines has a negligible effect on the absorption spectra. The experimental triplet state energy is between 21600 and 22 100 cm(-1) for the series of compounds and the luminescence lifetimes at 77 K are between 0.5 and 0.8 ms in HO2 and equal to 1.7 ms in D2O. The experimental characterizations are completed by DFT and TD-DFT calculations to assess the ability of these approaches to predict absorption maxima, triplet state energies and structural parameters of lanthanide cryptates and to characterize the electronic structure of the excited states. The calculations on the unsubstituted parent and substituted compounds show that absorption maxima and lowest 3pipi* triplet state energies can be accurately determined from density functional theory (DFT) and time-dependent (TD) DFT calculations.     

萤火虫氧化荧光素及其衍生物的电子结构和光物理性质

通过密度泛函理论(DFT)的MPW3PBE泛函, 对萤火虫生物发光底物氧化荧光素及其衍生物进行了结构全优化. 计算了其电离能、 电子亲和势、 空穴抽取能、 电子抽取能、 空穴和电子重组能, 并评估了其空穴和电子传输能力. 采用含时密度泛函理论(TD-DFT)//MPW3PBE/6-31+G(d)方法计算了吸收光谱, 优化了最低单重态S₁, 研究了其荧光光谱, 进而考察了具有较高发光效率的氧化荧光素作为有机发光二极管(OLED)材料的可能性. 计算结果表明, 氧化荧光素及其衍生物可以同时作为电子传输层和发光层材料.     

Dye induced quenching of firefly luciferase-luciferin bioluminescence

The quenching of firefly bioluminescence (BL) in presence of xanthene dyes and tetratolylporphyrin was investigated. The BL intensity was quenched with an altered decay pattern in presence of xanthene dyes and tetratolylporphyrin. The electronic absorption spectra indicate that there is no significant interaction occurring between the dyes and the BL components in the ground state. The BL quenching decay rate and fluorescence quenching studies of luciferin by the dyes suggest an energy transfer through an exciplex, involving oxyluciferin, in the excited state and the dyes, in the ground state. The bimolecular quenching rate constant (K(q)) values obtained from fluorescence studies varied between 7.7 x 10(12) and 19.8 x 10(12)M(-1)s(-1). The magnitude of the bimolecular quenching rate constants confirmed the complex formation between dye and excited oxyluciferin. The exciplex subsequently undergoes a non-radiative decay to the ground state via a combination of heavy atom induced and F?rster-type energy transfer. The decay rate constants in presence and in absence of dyes vary between 7.47 x 10(-4) and 7.6 x 10(-2)s(-1). In the presence of dyes the effective decay rate constants (k(eff)) increased while the lifetime of light emitting species decreased. The kinetic studies in presence of singlet oxygen scavengers, like beta-carotene and NaN(3), prove that there is no significant quenching of the firefly BL due to the formation of singlet oxygen.     

Structures, spectroscopic properties and redox potentials of quaterpyridyl Ru(II) photosensitizer and its derivatives for solar energy cell: a density functional study

Scalar relativistic density functional theory (DFT) has been used to explore the spectroscopic and redox properties of Ruthenium-type photovoltaic sensitizers, trans-[Ru((R)L)(NCS)(2)] ((R)L = 4,4'-di-R-4',4'-bis(carboxylic acid)-2,2' : 6',2' : 6',2'-quaterpyridine, R = H (1), Me (2), (t)Bu (3) and COOH (4); (R)L = 4,4'-di-R-4',4'-bis(carboxylic acid)-cycloquaterpyridine, R = COOH (5)). The geometries of the molecular ground, univalent cationic and triplet excited states of 1-5 were optimized. In complexes 1-4, the quaterpyridine ligand retains its planarity in the molecular, cationic and excited states, although the C≡N-Ru angle representing the SCN → Ru coordination approaches 180° in the univalent cationic and triplet excited states. The theoretically designed complex 5 displays a curved cycloquaterpyridine ligand with significantly distorted SCN → Ru coordination. The electron spin density distributions reveal that one electron is removed from the Ru/NCS moieties upon oxidation and the triplet excited state is due to the Ru/NCS → polypyridine charge transfer (MLCT/L'LCT). The experimental absorption spectra were well reproduced by the time-dependent DFT calculations. In the visible region, two MLCT/L'LCT absorption bands were calculated to be at 652 and 506 nm for 3, agreeing with experimental values of 637 and 515 nm, respectively. The replacement of the R- group with -COOH stabilizes the lower-energy unoccupied orbitals of π* character in the quaterpyridine ligand in 4. This results in a large red shift for these two MLCT/L'LCT bands. In contrast, the lower-energy MLCT/L'LCT peak of 5 nearly disappears due to the introduction of cycloquaterpyridine ligand. The higher energy bands in 5 however become broader and more intense. As far as absorption in the visible region is concerned, the theoretically designed 5 may be a very promising sensitizer for DSSC. In addition, the redox potentials of 1-5 were calculated and discussed, in conjunction with photosensitizers such as cis-[Ru(L(1))(2)(X)(2)] (L(1) = 4,4'-bis(carboxylic acid)-2,2'-bipyridine; X = NCS(-) (6), Cl(-) (7) and CN(-) (8)), cis-[Ru(L(1)')(2)(NCS)(2)] (L(1)' = 4,7-bis(carboxylic acid)-1,10-phenanthroline, 9), [NH(4)][Ru(L(2))(NCS)(3)] (L(2) = 4,4',4'-tris(carboxylic acid)-2,2' : 6',2'-terpyridine, 10) and [Ru(L(2))(NCS)(3)](-) (11).     

Synthesis, characterization, and spectroscopic investigation of benzoxazole conjugated Schiff bases

Two Schiff bases were synthesized by reaction of 2-(4'-aminophenyl)benzoxazole derivatives with 4-N,N-diethylaminobenzaldehyde. UV-visible (UV-vis) and steady-state fluorescence in solution were applied in order to characterize its photophysical behavior. The Schiff bases present absorption in the UV region with fluorescence emission in the blue-green region, with a large Stokes' shift. The UV-vis data indicates that each dye behaves as two different chromophores in solution in the ground state. The fluorescence emission spectra of the dye 5a show that an intramolecular proton transfer (ESIPT) mechanism takes place in the excited state, whereas a twisted internal charge transfer (TICT) state is observed for the dye 5b. Theoretical calculations were performed in order to study the conformation and polarity of the molecules at their ground and excited electronic states. Using density functional theory (DFT) methods at theoretical levels BLYP/Aug-SV(P) for geometry optimizations and B3LYP/6-311++G(2d,p) for single-point energy evaluations, the calculations indicate that the lowest energy conformations are in all cases nonplanar and that the dipole moments of the excited state relaxed structures are much larger than those of the ground state structures, which corroborates the experimental UV-vis absorption results.     

1,2,3,4-四氢喹啉-4-酮衍生物的线性及非线性光学性质

合成了一系列具有刚性结构的推拉型1,2,3,4-四氢喹啉-4-酮衍生物: 1-苄基-1,2,3,4-四氢喹啉-4-酮(BTHQ)、2-(1,2,3,4-四氢喹啉-4-叶立德)丙二腈(THQM)、1,6-二羰基久洛尼定(DOJ)和1,6-二(二氰甲烯基叶立德)久洛尼定(BDCJ).测定了其吸收光谱、单光子荧光光谱和双光子上转换荧光光谱. 这类化合物的单双光子荧光参数都存在着很强的、规则的溶剂效应, 表明分子激发态可能存在较大的极性. 它们的二氯甲烷溶液在800 nm飞秒激光(150 fs)照射下, 能够发射出很强的双光子上转换荧光. 采用非线性透过率法测得四个化合物的双光子吸收截面在0.83～23.95×10－50 cm4•s•photon－1之间. 这类化合物的激发态存在有效的分子内电荷转移, 对双光子吸收和双光子荧光发射有较大贡献.     

Spectroscopic Properties of Amine‐substituted Analogues of Firefly Luciferin and Oxyluciferin

Spectroscopic and photophysical properties of firefly luciferin and oxyluciferin analogues with an amine substituent (NH₂, NHMe and NMe₂) at the C6' position were studied based on absorption and fluorescence measurements. Their π‐electronic properties were investigated by DFT and TD‐DFT calculations. These compounds showed fluorescence solvatochromism with good quantum yields. An increase in the electron‐donating strength of the substituent led to the bathochromic shift of the fluorescence maximum. The fluorescence maxima of the luciferin analogues and the corresponding oxyluciferin analogues in a solvent were well correlated with each other. Based on the obtained data, the polarity of a luciferase active site was explained. As a result, the maximum wavelength of bioluminescence for a luciferin analogue was readily predicted by measuring the photoluminescence of the luciferin analogue in place of that of the corresponding oxyluciferin analogue.     

Structural, electronic, and optical properties of phosphole-containing pi-conjugated oligomers for light-emitting diodes

The purpose of this work is to provide an in-depth interpretation of the optical and electronic properties of a series of phosphole derivatives, including 2,5-diphenylthiooxophosphole (2a), 2-phenyl-5-biphenylthiooxophosphole (3a), 2-phenyl-5-stilbenylthiooxophosphole (4a), 2,5-dithienylthiooxophosphole (2b), 2-thienyl-5-biphenylthiooxophosphole (3b), 2-thienyl-5-stilbenylthiooxophosphole (4b), and dibenzophosphole 1. These thiooxophospholes show great potential for application in OLEDs as efficient red emitters due to the tuning of the optical and electronic properties by the use of various substituents at the 2,5-positions of the phosphole ring. The geometric and electronic structures of the oligomers in the ground state were investigated using density functional theory (DFT) and the ab initio HF, whereas the lowest singlet excited states were optimized with ab initio CIS. To assign the absorption and emission peaks observed in the experiment, we computed the energies of the lowest singlet excited states with time-dependent DFT (TD-DFT). All DFT calculations were performed using the B3LYP functional and the 6-31G (d) basis set. The results show that the HOMOs, LUMOs, energy gaps, ionization potentials, and electron affinities for the phosphole derivatives are significantly affected by varying the phosphole ring substituents at the 2,5-positions, which favor the hole and electron injection into OLEDs. The absorption and emission spectra exhibit red shifts to some extent [the absorption spectra: 339.63 (1)<358.65 (2a)<373.77 (3a)<443.89 nm (4a) and 403.03 (3b)<449.11 (2b)<460.19 nm (4b); the emission spectra: 418.42 (1)<513.62 (2a)<556.51 (3a)<642.59 nm (4a) and 568.31 (2b)<631.11 (3b)<647.35 nm (4b)] and the Stokes shifts are unexpectedly large ranging from 78 to 228 nm resulting from a more planar conformation of the excited state for the phosphole derivatives.     

Analysis of Photoexcitation Energy Dependence in the Photoluminescence of Firefly Luciferin

The whole pathways for photoluminescence, which include absorption, relaxation and emission, of firefly luciferin in aqueous solutions of different pH values with different photoexcitation energies were theoretically investigated by considering protonation/deprotonation. It is experimentally known that the color of fluorescence changes from green to red with a decrease in the photoexcitation energy. We confirmed with the theoretical analysis that the peak energy shift in the fluorescence spectra with varying photoenergies is due to a change in photoluminescence pathway. When the photoexcitation energy is decreased, the red emission from a monoanion form of firefly luciferin with carboxylate and phenolate groups and N‐protonated thiazoline ring occurs irrespective of the pH values. However, because the species abundant in the solution and those excited by the photon depend on the solution pH, the pathway leading to the monoanion form changes with the solution pH.     

Determination of the ground- and excited-state dipole moments of 4’-(hexyloxy)-4-biphenylcarbonitrile and 4-isothiocyanatophenyl 4-pentylbicyclo [2,2,2] octane-1-carboxylate nematic liquid crystals and their mixtures

The dipole moments of the ground and excited states of 4′-(hexyloxy)-4-biphenylcarbonitrile and 4-isothiocyanatophenyl 4-pentylbicyclo [2.2.2] octane-1-carboxylate nematic liquid crystals and their mixtures prepared in chloroform and dichloromethane were studied at room temperature. The dipole moments of the ground states of the all samples were calculated according to the Guggenheim–Smith method. The dipole moments of their excited states were determined with the help of the Lippert equation by measuring the absorption and fluorescence spectra, solvent polarity and refractive index values. It was determined that dipole moments of the excited states were higher than those of the ground states. Moreover, the dipole moments of the ground and excited states of two nematic liquid crystals were also estimated by using molecular mechanic method (Gaussian09 program (DFT/B3LYP 6-31G(dp)). The results obtained are interpreted in detail.     

2-氨基苯并噻唑的结构及激发态质子转移动力学

通过傅里叶变换红外光谱（FTIR）、傅里叶变换拉曼（FT-Raman）和488 nm拉曼光谱,结合密度泛函理论（DFT）计算研究了2-氨基苯并噻唑（ABT）在晶态和溶剂中的二聚体结构,并解释了质子性溶剂中ABT二聚体与溶剂分子间的氢键作用.电子光谱实验揭示了ABT二聚体的光物理和光化学反应;紫外吸收和荧光发射光谱结果表明,溶剂、激发波长和pH值对ABT二聚件激发态衰变具有调控作用;含时密度泛函理论（TD-DFT）解释了ABT二聚体双荧光现象,提出了高激发态的质子转移机理.     

Experimental investigation of electronic states of LiCs dissociating to Li(2(2)S) and Cs(5(2)D) atoms

Polarization labeling spectroscopy technique was used to measure excitation spectra of LiCs molecule in the spectral range of 16,000-18,500 cm(-1). Four band systems were observed and assigned to transitions from the ground X(1)Σ(+) state to excited states (4)Ω = 0(+), (5)Ω = 0(+), (5)Ω = 1, and (6)Ω = 1 (in Hund's case (c) notation proper here), the latter three states being fine structure components of the states d(3)Π and e(3)Σ(+), nominally of triplet symmetry. The observed states are characterized spectroscopically and the experimental results are compared with predictions of theoretical calculations, showing accuracy of the theoretical electronic term values better than 100 cm(-1) and of the ω(e) and R(e) constants within 5%.     

Fluorescence excitation spectra of the b (1)Pi(u), b(') (1)Sigma(u) (+), c(n) (1)Pi(u), and c(n) (') (1)Sigma(u) (+) states of N(2) in the 80-100 nm region

Fluorescence excitation spectra produced through photoexcitation of N(2) using synchrotron radiation in the spectral region between 80 and 100 nm have been studied. Two broadband detectors were employed to simultaneously monitor fluorescence in the 115-320 nm and 300-700 nm regions, respectively. The peaks in the vacuum ultraviolet fluorescence excitation spectra are found to correspond to excitation of absorption transitions from the ground electronic state to the b (1)Pi(u), b(') (1)Sigma(u) (+), c(n) (1)Pi(u) (with n=4-8), c(n) (') (1)Sigma(u) (+) (with n=5-9), and c(4) (')(v('))(1)Sigma(u) (+) (with v(')=0-8) states of N(2). The relative fluorescence production cross sections for the observed peaks are determined. No fluorescence has been produced through excitation of the most dominating absorption features of the b-X transition except for the (1,0), (5,0), (6,0), and (7,0) bands, in excellent agreement with recent lifetime measurements and theoretical calculations. Fluorescence peaks, which correlate with the long vibrational progressions of the c(4) (') (1)Sigma(u) (+) (with v(')=0-8) and the b(') (1)Sigma(u) (+) (with v(') up to 19), have been observed. The present results provide important information for further unraveling of complicated and intriguing interactions among the excited electronic states of N(2). Furthermore, solar photon excitation of N(2) leading to the production of c(4) (')(0) may provide useful data required for evaluating and analyzing dayglow models relevant to the interpretation of c(4) (')(0) in the atmospheres of Earth, Jupiter, Saturn, Titan, and Triton.     

Theoretical Study of Firefly Luciferin pKa Values—Relative Absorption Intensity in Aqueous Solutions

Ground‐state vibrational analyses of firefly luciferin and its conjugate acids and bases are performed. The Gibbs free energies obtained from these analyses are used to estimate pK_a values for phenolic hydroxy and carboxy groups and the N–H⁺ bond in the N‐protonated thiazoline or benzothiazole ring of firefly luciferin. The theoretical pK_a values are corrected using the experimental values. The concentrations of these chemical species in solutions with different pH values are estimated from their corrected pK_a values, and the pH dependence of their relative absorption intensities is elucidated. With the results obtained we assign the experimental spectra unequivocally. Especially, the small peak near 400 nm at pH 1–2 in experimental absorption spectra is clarified to be due to the excitation of carboxylate anion with N‐protonated thiazoline ring of firefly luciferin. Our results show that the pK_a values of chemical species, which are contained in the aqueous solutions, are effective to assign experimental absorption spectra.     

Mechanism of Ir(ppy)2(N--N)+ (N--N = 2-phenyl-1H-imidazo[4,5-f][1,10]phenanthroline) sensor for F-, CF3COOH, and CH3COO-: density functional theory and time-dependent density functional theory studies

The geometries, electronic structures, and spectroscopic properties of Ir(ppy)2(N--N)(+) (1) (N--N = 2-phenyl-1H-imidazo[4,5-f][1,10]phenanthroline, ppy = 2-phenylpyridine), Ir(ppy)2(N--N)(+) x F(-) (2), Ir(ppy)2(N--N)(+) x CF3COOH (3/3a), and Ir(ppy)2(N--N)(+) x CH3COO(-) (4) were investigated theoretically. The ground and the excited state geometries of 1-4 were optimized at the B3LYP/LANL2DZ and UB3LYP/LANL2DZ levels, respectively. The optimized geometries agree well with the corresponding experimental results. The HOMOs of 1-4 and 3a are composed of pi(ppy) and d(Ir), and the LUMOs of 1, 2, 3a, and 4 are contributed by pi*(N--N), whereas the LUMO of 3 is composed of pi*(N--N) and pi*(CF3COOH). Under the time-dependent density functional theory level with polarized continuum model model, the absorption and phosphorescence in CH2Cl2 media were calculated on the basis of the optimized ground and excited state geometries, respectively. The lowest-lying absorptions of 1 (412 nm) and 3/3a (409/419 nm) have MLCT/LLCT transition characters, and those of 2 (448 nm) and 4 (427 nm) are contributed by ILCT character. The calculated lowest-energy triplet excited states responsible for phosphorescence of 1 (519 nm) and 3/3a (661/702 nm) have mixing (3)MLCT/(3)LLCT/(3)ILCT characters, but those of 2 and 4 only have (3)ILCT but without (3)MLCT character, which is the reason for the no-emissive character of 2 and 4. Moreover, the phosphorescence character of 3 is hardly changed by different addition sites of CF3COOH group (3a). The calculated results also showed that complex 1 is more suitable for an F(-) sensor than for CF3COOH and CH3COO(-) sensors.