Biosynthesis of streptolydigin: origin of the oxygen atoms

[Structure: see text] Biosynthetic incorporations of [13C,18O]-labeled precursors into streptolydigin reveal the origin of the oxygen atoms, limiting the possible pathways for acyltetramic acid ring assembly and for formation of the bicyclic ketal.     

Diversity of the biosynthesis of the isoprene units

This review covers the biosynthesis of the starter units of terpenoids, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) via the nonmevalonate pathway together with a new enzyme involved in the conversion of IPP and DMAPP, i.e type 2 IPP isomerase. The biosynthesis of terpenoids produced by actinomycetes is also reviewed. 117 references are cited.     

Penicillin biosynthesis the immediate origin of the sulphur atom

A mixture of tripeptide isotopomers δ-(L-α-aminoadipyl)-L-cystelnyl-D [2-²H]-valine and δ-(L-α-aminoadipyl)-L-(³⁴S-cysteinyl)-D-valine were converted by the enzyme isopenicillin-N-synthetase into isopenicillin N. The distribution of the ²H and ³⁴S in this product, determined by mass spectrometry, showed there was no transfer of the sulphur between the precursor molecules during conversion to penicillin.     

The biosynthesis of broussonetines: origin of the carbon skeleton

Broussonetines are glycosidase-inhibitory alkaloids obtained from Broussonetia kazinoki. Feeding experiments using [1-13C]glucose and 13C-NMR spectroscopic studies showed that broussonetines are biosynthesized through routes similar to those of sphingosine and phytosphingosine.     

Investigation of the early stages in soraphen A biosynthesis

The unusual benzoate starter unit in soraphen A derives from phenylalanine via cinnamate in a beta-oxidative (plant-like) pathway; 3-phenyl-3-hydroxypropanoate incorporates directly into soraphen by loading onto module 2 of the PKS and indirectly from the beta-oxidative pathway to generate benzoyl CoA.     

Introduction of functionalized C1, C2, and C3 units to imines through the dimethylzinc-air-initiated radical addition

Introduction of functionalized C1, C2, and C3 units to imines was achieved by using the dimethylzinc-air-initiated alpha-alkoxyalkyl radical addition as a key reaction. The addition to a C[double bond]N double bond chemoselectively occurred in the presence of a C[double bond]O double bond, which is one of the advantages of this radical addition reaction over ionic addition reactions.     

Theoretical Investigation of the C2H2B2 Potential Energy Surface

Fifteen unique energy minima and thirteen transition states on the C ₂H₂B₂ potential surface have been located and optimized at the MP2 level of theory with the 6-311G(d,p) basis set. The planar four-membered ring isomer , 1, an analog of cyclobutadiene, is a transition state lying 37 kcal/mol above the nonplanar four-membered ring , 3. The planar , 10, is the second most stable species found, lying 72.2 kcal/mol below 3. The nonplanar, butterfly-shaped ring, 4, is a local minimum 33.7 kcal/mol more stable than 3. A four-membered ring isomer with alternating boron–carbon locations, , 5, lies 67.0 kcal/mol below 3 and 33.3 kcal/mol below 4. The ring of 5 is planar with one hydrogen above and one below the plane (C _2h symmetry). The borylene-substituted boracyclopropene, , 8, is a planar local minimum lying 36.0 kcal/mol above 5. The most stable C₂H₂B₂ isomer found was the planar, four-membered ring system 22 (D _2h symmetry) composed of two BCC three-membered rings fused across the C-C bond. Structure 22 lies 22.2 kcal/mole below 10, 105.4 kcal/mol below 3, 71.7 kcal/mol below 4, and 38.2 kcal/mol below 5. Isomer 22 is the structural analog of the trialene form of C₄H₂. The most stable linear isomer, HB BH, 26, was surprisingly 50.5 kcal/mol less stable than 22. The stabilities of the two most stable cyclic isomers 10 and 22 may be explained by aromaticity.     

Investigation of the origin of selectivity in cavitand-based supramolecular sensors

The sensing properties of functionalized cavitands have been studied by thin-film coating TMSR chemical sensors and by measuring their responses towards model analytes. We studied the relationship between the sensor performance, in terms of sensitivity and selectivity, and the molecular recognition properties of the cavitands. The Langmuir-like shape of the adsorption isotherm, obtained in the case of short-chain alcohols, demonstrated that selective binding can be achieved by the synergistic interactions of the cavity and the bridging PO(in) groups. In the absence of these substituents, the peripheral alkyl chains necessary for the formation of highly permeable thin films attenuate the cavity effect because of nonspecific dispersion interactions. This completely overrides the response originating from molecular recognition. The same effect is observed when the PO groups are oriented outward from the cavity. The use of multivariate chemometrics and the study of the correlations between sensors sensitivity and analyte properties provided further evidence of molecular recognition phenomena, whose intensity is enhanced by the permanent free volume created by the rigid cavity surrounding the PO(in) group.     

Formation of the C ring in the lanosterol biosynthesis from squalene

[reaction: see text] Ab initio calculations were performed on a cyclohexane derivative to elucidate the mechanism of the formation of the five-membered C ring in the biosynthesis of lanosterol from squalene. A conformational analysis of the side chain containing the double bond indicated that the conformer that should give rise to the cyclized C ring is not a minimum on the potential surface. Consequently, it is suggested that it is very likely that C-ring formation occurs in concert with formation of the A and B rings.     

Mixing and matching genes of marine and terrestrial origin in the biosynthesis of the mupirocin antibiotics

With growing understanding of the underlying pathways of polyketide biosynthesis, along with the continual expansion of the synthetic biology toolkit, it is becoming possible to rationally engineer and fine-tune the polyketide biosynthetic machinery for production of new compounds with improved properties such as stability and/or bioactivity. However, engineering the pathway to the thiomarinol antibiotics has proved challenging. Here we report that genes from a marine Pseudoalternomonas sp. producing thiomarinol can be expressed in functional form in the biosynthesis of the clinically important antibiotic mupirocin from the soil bacterium Pseudomonas fluorescens. It is revealed that both pathways employ the same unusual mechanism of tetrahydropyran (THP) ring formation and the enzymes are cross compatible. Furthermore, the efficiency of downstream processing of 10,11-epoxy versus 10,11-alkenic metabolites are comparable. Optimisation of the fermentation conditions in an engineered strain in which production of pseudomonic acid A (with the 10,11-epoxide) is replaced by substantial titres of the more stable pseudomonic acid C (with a 10,11-alkene) pave the way for its development as a more stable antibiotic with wider applications than mupirocin.

Where the sea meets the land: the mupirocin biosynthetic gene cluster (BGC) from the terrestrial bacterium Pseudomonas fluorescens was repurposed via a plug-and-play approach with heterologous genes from the marine strain that produces thiomarinol.     

Studies on the biosynthesis of asperparaline A: origin of the spirosuccinimde ring system

The primary amino acid building blocks that constitute asperparaline A have been determined through feeding and incorporation of 13C-labeled intermediates. The beta-methyl proline residue is constituted from (S)-isoleucine, the novel spiro-succinime moiety is derived from the oxidative degradation of (S)-tryptophan, and (S)-adenosylmethionine contributes the two N-methyl residues. In addition, it was found that the incorporation of 13C-labeled acetate into the single isoprene unit clearly demonstrates that the isoprene moiety is derived from the mevalonate pathway.     

Exploration of the molecular origin of the azinomycin epoxide: timing of the biosynthesis revealed

Streptomyces sahachiroi whole cell feeding experiments, utilizing putative precursors labeled with stable isotopes, established that the epoxide unit of the DNA cross-linked agents, azinomycin A and B, proceeds via a valine-dependent pathway and that hydroxylation and dehydration precedes formation of the terminal epoxide. Sodium 3-methyl-2-oxobutenoate, formed through a transimination reaction, was shown to be the penultimate precursor incorporated into the azinomycin epoxide.     

Cu3C4-: a new sandwich molecule with two revolving C2(2-) units

A combined photoelectron spectroscopy (PES) and ab initio study was carried out on a novel copper carbide cluster in the gas phase: Cu(3)C(4)(-). It was generated in a laser vaporization cluster source and appeared to exhibit enhanced stability among the Cu(3)C(n)(-) series. Its PES spectra were obtained at several photon energies, showing numerous well-resolved bands. Extensive ab initio calculations were performed on Cu(3)C(4)(-), and two isomers were identified: a C(2) structure ((1)A) with a Cu(3)(3+) triangular group sandwiched by two C(2)(2-) units and a linear CuCCCuCCCu structure (D(infinity)(h), (1)Sigma(g)(+)). A comparison of ab initio PES spectra with experimental data showed that the sandwich Cu(3)C(4)(-) cluster was solely responsible for the observed spectra and the linear isomer was not present, suggesting that the C(2) structure is the global minimum in accordance with CCSD(T)/6-311+G predictions. Interestingly, a relatively low barrier (0.4-0.6 kcal/mol) was found for the internal rotation of the C(2)(2-) units in the sandwich Cu(3)C(4)(-). To test different levels of theory in describing the Cu(m)C(n)(-) systems and lay foundations for the validity of the theoretical methods, extensive calculations at a variety of levels were also carried out on a simpler copper carbide species CuC(2)(-), where two isomers were found to be close in energy: a linear one (C(infinity)(v), (1)Sigma(+)) and a triangular one (C(2)(v), (1)A(1)). The calculated electronic transitions for CuC(2)(-) were also compared with the PES data, in which both isomers were present.     

Electroactive C(2) symmetry receptors based on the biphenyl scaffold and tetrathiafulvalene units

The synthesis of a family of biphenyl-tetrathiafulvalene (TTF) derivatives incorporating a binding site has been carried out in good to moderate yields through functionalization of the biphenyl scaffold. X-ray structure of one derivative (compound 3) of the series is provided and shows a dihedral angle of 74 degrees around the central Ar-Ar bond of the biphenyl unit in a cisoid conformation. (1)H NMR and cyclic-voltammetry studies demonstrate the critical importance of the nature of the substitution on the conformational rigidity and on the electrochemical behavior of the resulting biphenyl-TTF assemblies. This feature is underlined by an original electrochemical recognition process upon binding of Pb(2+), correlated to conformational changes occurring upon metal cation complexation.     

Starter units of the biosynthesis of blepharismins: self-defense pigments of Blepharisma japonicum

The heterotrich ciliate Blepharisma japonicum produces red pigment blepharismins, which function as self-defense toxin against predators and as a photoreceptor for step-up photonegativity. The dibenzoperylenequinone moiety of blepharismins was shown to be biosynthesized via the polyketide pathway. In this paper, the starter units of the biosynthetic pathway of blepharismins were determined to be isovaleryl-CoA and butyryl-CoA by HPLC, LC/ESI-MS, and ¹H and ²H NMR analyses of the pigments obtained from feeding experiment of l-leucine or sodium butyrate in excess and deuterium-labeled l-leucine.     

Investigation of nanoorganized biomaterials of marine origin

Naturally occurring nanoorganized biomaterials of marine origin provide an abundant source of novel bone and cartilage replacement materials, and enable the development of novel biomimetic composites. The design of novel biomaterial relies on an understanding of the organic matrices and templating structures. The aim of the present study was to investigate the composition and the properties of skeletal structures of marine sponge (Verongula gigantea) and octocorals (Isidella sp.) in particular by using instrumental analytical (i.e. electron transmission and scanning microscopic methods, vibrational spectroscopies) methods. Modern gentle demineralization techniques were used. It was shown, that the demosponge V. gigantea has much potential as a biomaterial due to the multilayered structure of its rigid fibrous skeletons. The results of FTIR and Raman spectroscopy unambiguously showed that all specimens of the investigated sponge have α-chitin as the main skeletal component. Nano-crystalline aragonite was isolated and identified in V. gigantea, a sponge usually described as lacking a mineral skeleton. Bamboo corals of the Isididae family were additionally investigated. An inorganic component within the deep-sea octocoral Isidella sp. could be clearly identified as calcite by using Raman spectroscopy. The organic part was identified as a nanoorganized fibrillar proteinaceous matrix with acidic properties.