Excited state dynamics in recombinant water-soluble chlorophyll proteins (WSCP) from cauliflower investigated by transient fluorescence spectroscopy

The present study describes the fluorescence emission properties of recombinant water-soluble chlorophyll (Chl) protein (WSCP) complexes reconstituted with either Chl a or Chl b alone (Chl a only or Chl b only WSCP, respectively) or mixtures of both pigments at different stoichiometrical ratios. Detailed investigations were performed with time and space correlated ps fluorescence spectroscopy within the temperature range from 10 to 295 K. The following points were found: (a) The emission spectra at room temperature (295 K) are well characterized by bands with a dominating Lorentzian profile broadened due to phonon scattering and peak positions located at 677, 684 and 693 nm in the case of Chl a only WSCP and at 665, 675 and 689 nm for Chl b only WSCP. In addition, all spectra contain minor bands in the longer wavelength region. (b) The emission spectra at 10 K of samples suspended in buffer containing 50% glycerol are dominated by bands peaking at 668 nm for Chl b only WSCP and at 685 nm for Chl a only WSCP and samples reconstituted with mixtures of Chl a and Chl b. (c) At 10 K and in buffer with 50% glycerol the decay kinetics of WSCP samples with Chl a only are dominated by a component with a time constant of 6.2 (+/-0.2) ns at 685 nm while those of WSCP containing mixtures of Chl a and Chl b are characterized by a slightly shorter value of 6.0 (+/-0.2) ns. WSCP containing Chl b only exhibits a distinctly longer value of 7.0 (+/-0.3) ns at an emission wavelength of 668 nm. (d) The decay associated emission spectra at 10 K of all samples exhibit at least 3 decay components with time constants of 80-120 ps, 2-4 ns and 6-7 ns in 50% glycerol. These results are consistently described within the framework of our previously presented model (J. Phys. Chem. B 2007, 111, No. 46, 13325; J. Phys. Chem. B 2007, 111, No. 35, 10487) , for the structural motifs of chlorophyll binding to the tetrameric protein matrix of WSCP. It is shown that formation of strongly coupled open sandwich dimers does not lead to quenching of 1Chl a* or 1Chl b*.     

Low-energy chlorophyll states in the CP43 antenna protein complex: simulation of various optical spectra. II

The CP43 protein complex of the core antenna of higher plant photosystem II (PSII) has two quasidegenerate "red" absorption states. It has been shown in the accompanying paper I (Dang, N. C., et al. J. Phys. Chem. B 2008, 112, 9921.) that the site distribution functions (SDFs) of red-states A and B are uncorrelated and the narrow holes are burned in subpopulations of chlorophylls (Chls) from states A and B that are the lowest-energy pigments in their particular CP43 complexes and cannot further transfer energy downhill. In this work, we present the results of a series of Monte Carlo simulations using the 3.0-A structure of the PSII core complex from cyanobacteria (Loll, B., et al. Nature 2005, 303, 1040.) to model absorption, emission, persistent, and transient hole burned (HB) spectra. At the current structural resolution, we found calculated site energies (obtained from INDO/S calculations) to be only suggestive because their values are different for the two monomers of CP43 in the PS II dimer. As a result, to probe the excitonic structure, a simple fitting procedure was employed to optimize Chl site energies from various starting values corresponding to different A/B pigment combinations to provide simultaneously good fits to several types of optical spectra. It is demonstrated that the shape of the calculated absorption, emission, and transient/persistent hole-burned spectra is consistent with experimental data and our model for excitation energy transfer between two quasi-degenerate lowest-E states (A and B) with uncorrelated SDFs discussed in paper I. Calculations revealed that absorption changes observed near 670 nm in the non-line-narrowed persistent HB spectra (assigned to photoconversion involving Chl-protein hydrogen-bonding by Hughes (Biochemistry 2006, 45, 12345.) are most likely the result of nonphotochemical hole-burning (NPHB) accompanied by the redistribution of oscillator strength due to modified excitonic interactions. We argue that a unique redistribution of oscillator strength during the NPHB process helps to assign Chls contributing to the low-energy states. It is demonstrated that the 4.2 K asymmetric triplet-bottleneck (transient) hole is mostly contributed to by both A and B states, with the hole profile described by a subensemble of pigments, which are the lowest-energy pigments (B s- and A s-type) in their complexes. The same lowest-energy Chls contribute to the observed fluorescence spectra. On the basis of our excitonic calculations, the best Chl candidates that contribute to the low-energy A and B states are Chl 44 and Chl 37, respectively.     

Ionization‐Induced Solvent Migration in Acetanilide‐Methanol Clusters Inferred from Isomer‐Selective Infrared Spectroscopy

We present the resonance‐enhanced multiphoton ionization, infrared‐ultraviolet hole burning (IR‐UV HB), and IR dip spectra of the trans‐acetanilide–methanol (AA–MeOH) cluster in the S₀, S₁, and cationic ground state (D₀) in a supersonic jet. The IR‐UV HB spectra demonstrate the co‐existence of two isomers in S_0,1, in which MeOH binds either to the NH or the CO site of the peptide linkage in AA, denoted as AA(NH)–MeOH and AA(CO)–MeOH. When AA(CO)–MeOH is selectively ionized, its IR spectrum in D₀ is the same as that measured for AA⁺(NH)–MeOH. Thus, photoionization of AA(CO)–MeOH induces migration of MeOH from the CO to the NH site with 100% yield.     

Pigment-pigment and pigment-protein interactions in recombinant water-soluble chlorophyll proteins (WSCP) from cauliflower

Plants contain water-soluble chlorophyll-binding proteins (WSCPs) that function neither as antennas nor as components of light-induced electron transfer of photosynthesis but are likely constituents of regulatory protective pathways in particular under stress conditions. This study presents results on the spectroscopic properties of recombinant WSCP from cauliflower reconstituted with chlorophyll b (Chl b) alone or with mixtures of Chl a and Chl b. Two types of experiments were performed: (a) measurements of stationary absorption spectra at 77 and 298 K and CD spectra at 298 K and (b) monitoring of laser flash-induced transient absorption changes with a resolution of 200 fs in the time domain of up to 100 ps. On the basis of a theoretical analysis outlined by Renger et al. (J. Phys. Chem. B 2007, 111, 10487) the data obtained in part (a) are interpreted within a model where tetrameric WSCP binds predominantly two Chl molecules in the form of an excitonically coupled "open sandwich" dimer with a tilt angle of about 30 degrees between the chlorin planes. The time-resolved measurements on Chl a/Chl b heterodimers are described by two exponential kinetics with time constants of 400 fs and 7 ps. These kinetics are assumed to reflect a heterogeneous population of WSCPs with Chl dimers either in excitonic coupled "open sandwich" or weakly coupled geometric arrays. The 400 fs component is assigned to excited-state relaxations from the upper to the lower excitonic level of the strongly coupled "open sandwich" dimer, while the 7-8 ps component probably indicates excitation energy transfer from 1Chl b* to Chl a in a dimer array with weak coupling due to significantly longer mutual distances between the chlorin rings.     

Synthesis of novel 6,7‐dihydro‐5H‐pyrimido[4,5‐e][1,4]diazepin‐8(9H)‐ones

A new method was developed for the synthesis of 6,7‐dihydro‐5H‐pyrimido[4,5‐e][1,4]diazepin‐8(9H)‐one derivatives. The key to construct the pyrimido[4,5‐e][1,4]diazepine core is the intramolecular amidation of N‐((4‐amino‐6‐chloropyrimidin‐5‐yl)methyl)‐substituted amino acid esters. This methodology was validated through the preparation of 13 representative 6,7‐dihydro‐5H‐pyrimido[4,5‐e][1,4]diazepin‐8(9H)‐ones in moderate to good yields. J. Heterocyclic Chem., (2011).     

Atomistic hybrid particle‐field molecular dynamics combined with slip‐springs: Restoring entangled dynamics to simulations of polymer melts

In hybrid particle‐field (hPF) simulations (J. Chem. Phys., 2009 130, 214106), the entangled dynamics of polymer melts is lost due to chain crossability. Chains cross, because the field‐treatment of the nonbonded interactions makes them effectively soft‐core. We introduce a multi‐chain slip‐spring model (J. Chem. Phys., 2013 138, 104907) into the hPF scheme to mimic the topological constraints of entanglements. The structure of the polymer chains is consistent with that of regular molecular dynamics simulations and is not affected by the introduction of slip‐springs. Although slight deviations are seen at short times, dynamical properties such as mean‐square displacements and reorientational relaxation times are in good agreement with traditional molecular dynamics simulations and theoretical predictions at long times.     

Blends of poly(3‐hydroxybutyrate)/4,4′‐thiodiphenol and poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate)/ 4,4′‐thiodiphenol: Specific interaction and properties

The specific interaction between poly(3‐hydroxybutyrate) [P(3HB)] and 4,4′‐thiodiphenol (TDP) and between poly(3‐hydroxybutyrate‐co‐3‐hydroxyvalerate) (PHBV) and TDP was investigated by Fourier transform infrared (FTIR) spectroscopy. Interassociated hydrogen bonds were found between the polyester chains and the TDP molecules in the binary blends. The fractions of associated carbonyl groups, F_b 's, in the blends first increased and then decreased as the TDP content increased. The thermal and dynamic mechanical properties of P(3HB)–TDP and PHBV–TDP blends were investigated by differential scanning calorimetry and dynamic mechanical thermal analysis, respectively. Thermal analysis revealed that the P(3HB)–TDP blends possessed eutectic phase behavior. Furthermore, it was found that the thermal and dynamic mechanical properties of P(3HB) and PHBV were greatly modified through blending with TDP. Environmental degradability in river water was evaluated by a biochemical oxygen demand tester, and it was clarified that TDP lowered the degradation rate of P(3HB). The results suggest that TDP is effective in modifying the physical properties as well as the biodegradability of polyesters. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 2891–2900, 2000     

High refractive index hyperbranched polyvinylsulfides for planar one‐dimensional all‐polymer photonic crystals

We report on the growth and characterization of one‐dimensional (1D) planar all‐polymer photonic crystals (PhC) with high dielectric contrast (Δn = 0.3) prepared by spin coating using hyperbranched polyvinylsulfide polymers (HB‐PVS) as high refractive index material and cellulose acetate as low refractive index material. Solution processable HB‐PVS show a near ultraviolet absorption inducing an increased refractive index in the visible‐near infrared (n = 1.68, λ = 1000 nm). HBPVS:Cellulose Acetate Distributed Bragg Reflectors show a very clear fingerprint of the photonic band gap possessing the expected polarized dispersion properties as a function of the incidence angle. Moreover, engineered microcavities tuned on the weak fluorescence spectrum of the HB‐PVS show directional fluorescence enhancement effects due to spectral redistribution of the emission oscillator strength. The combination of all these properties testifies the high optical quality of the obtained photonic structures thus indicating HB‐PVS as an interesting material for the preparation of such PhC. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 73–80     

Analytical gradients of the second‐order Møller–Plesset energy using Cholesky decompositions

An algorithm for computing analytical gradients of the second‐order Møller–Plesset (MP2) energy using density fitting (DF) is presented. The algorithm assumes that the underlying canonical Hartree–Fock reference is obtained with the same auxiliary basis set, which we obtain by Cholesky decomposition (CD) of atomic electron repulsion integrals. CD is also used for the negative semidefinite MP2 amplitude matrix. Test calculations on the weakly interacting dimers of the S22 test set (Jure?ka et al., Phys. Chem. Chem. Phys. 2006, 8, 1985) show that the geometry errors due to the auxiliary basis set are negligible. With double‐zeta basis sets, the error due to the DF approximation in intermolecular bond lengths is better than 0.1 pm. The computational time is typically reduced by a factor of 6–7. © 2013 Wiley Periodicals, Inc.     

One‐step synthesis of poly(lactic‐co‐glycolic acid)‐g‐poly‐1‐vinylpyrrolidin‐2‐one copolymers

The radical polymerization of 1‐vinylpyrrolidin‐2‐one (NVP) in poly(lactic‐co‐glycolic acid) (PLGA) 50:50 at 100 °C leads to amphiphilic PLGA‐g‐PVP copolymers. Their composition is determined by FT‐IR spectroscopy. Thermogravimetric analyses agree with FT‐IR determinations. Saponification of the PLGA‐g‐PVP polyester portion allows isolating the PVP side chains and measuring their molecular weight, from which the average chain transfer constant (C_T) of the PLGA units is estimated. The MALDI‐TOF spectra of PVP reveal the presence at one chain end of residues of either glycolic acid‐ or lactic acid‐ or lactic/glycolic acid dimers, trimers and one tetramer, the other terminal being hydrogen. This unequivocally demonstrates that grafting occurred. Accordingly, the orthogonal solvent pair ethyl acetate—methanol, while separating the components of PLGA/PVP intimate mixtures, fails to separate pure PVP or PLGA from the reaction products. All PLGA‐g‐PVP and PLGA/PLGA‐g‐PVP blends, but not PLGA/PVP blends, give long‐time stable dispersions in water. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 1919–1928     

Ellipsometry study of the photo‐oxidation of poly[(2‐methoxy‐5‐hexyloxy)‐ p‐phenylenevinylene]

Poly(p‐phenylenevinylene) (PPV) and its derivatives exhibit strong luminescence, being serious candidates to be used as active layers in organic light‐emitting diodes. However, the structural degradation caused by photo‐oxidation is an obstacle for commercial applications of such materials. Here, we show that spectroscopy ellipsometry is a useful technique to investigate the photo‐oxidation of poly[(2‐methoxy‐5‐hexyloxy)‐p‐phenylenevinylene] (MH‐PPV), a PPV derivative, which emits a red color light. Spectroscopy ellipsometry enables determination of the complex dielectric function—?*(E)—of MH‐PPV thin‐layer films exposed to air, in the 2.1–4.2 eV energy range, as a function of the light exposure time (t_e). By using the Lorentz model to fit the experimental ?*(E) curves, it was inferred that the interactions among polymeric chains increase with t_e. From ?*(E), it is also possible to obtain the complex refractive index, N*(E) = n + ik. At higher energies (where k ? n), n increases from 1.32 to 1.40 with the photo‐oxidation progress. The behavior of n was investigated by using the Lorenz–Lorentz equation, taking into account the contribution for n by the chromophores of MH‐PPV. The effect of photo‐oxidation, mainly due to the replacement of vinyl C?C by the ketone C?O bonds, is confirmed by Fourier transform infrared measurements, an effect that reduces the average effective polymer conjugation length. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 1033–1041, 2004     

Highly soluble green‐emitting Ir(III) complexes with 9‐(6‐phenyl‐pyridin‐3‐ylmethyl)‐9H‐carbazole ligands and their application to polymer light‐emitting diodes

Highly organic soluble Ir(III) complexes with 9‐(6‐phenyl‐pyridin‐3‐ylmethyl)‐9H‐carbazole were simply synthesized, and the solubility of the new complex was significantly improved when compared with the conventional green‐emitting Ir(ppy)₃. Since a carbazole group is tethered through a nonconjugated methylene spacer, the photophysical properties of new complexes are almost identical with those of conventional Ir(ppy)₃. The pure complexes were utilized to prepare electrophosphorescent polymer light‐emitting diodes (PLEDs). The device performances were observed to be relatively better or comparable with those of Ir(ppy)₃ based poly(N‐vinylcarbazole) systems. The integration of rigid hole‐transporting carbazole and phosphorescent complex provides a new route to design highly efficient solution‐processable complex for electrophosphorescent PLED applications. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 7419–7428, 2008     

Chemical synthesis of poly‐γ‐glutamic acid by polycondensation of γ‐glutamic acid dimer: Synthesis and reaction of poly‐γ‐glutamic acid methyl ester

α‐Methyl glutamic acid (L ‐L )‐, (L ‐D )‐, (D ‐L )‐, and (D ‐D )‐γ‐dimers were synthesized from L ‐ and D ‐glutamic acids, and the obtained dimers were subjected to polycondensation with 1‐(3‐dimethylaminopropyl)‐3‐ethylcarbodiimide hydrochloride and 1‐hydroxybenzotriazole hydrate as condensation reagents. Poly‐γ‐glutamic acid (γ‐PGA) methyl ester with the number‐average molecular weights of 5000∼20,000 were obtained by polycondensation in N,N‐dimethylformamide in 44∼91% yields. The polycondensation of (L ‐L )‐ and (D ‐D )‐dimers afforded the polymers with much larger |[α]_D | compared with the corresponding dimers. The polymer could be transformed into γ‐PGA by alkaline hydrolysis or transesterification into α‐benzyl ester followed by hydrogenation. © 2001 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 39: 732–741, 2001     

Thermal and spectral stability of electroluminescent hyperbranched copolymers containing tetraphenylthiophene‐quinoline‐triphenylamine moieties

Fluorescent hyperbranched copolymers (HB‐x, x = 1–4) with inherent tetraphenylthiophene, triphenylamine (TPA) and quinoline (Qu) moieties were prepared to study the influence of the TPA branching point on the thermal and the spectral stability. All the HB‐x copolymers exhibited high glass transition temperatures (T_gs = 245–315 °C) with the detected values increasing with the increasing branching TPA content in the HB‐x. The solid HB‐x films possess high emission efficiency with the resulting quantum yields (?_Fs) in the ranges of 0.72–0.74. More importantly, the HB‐x copolymers and the derived light‐emitting devices exhibit high photoluminescence (PL) and electroluminescence (EL) stability towards thermal annealing at temperatures higher than 200 °C. After annealing at 200 °C (or 300 °C), no change was observed in the respective PL and EL spectra of HB‐1 (or HB‐4) copolymers. The spectral stability was found to correlate with T_g and with the highest branching density, HB‐4 copolymer possesses the highest thermal stability among all HB‐xs and show no EL spectral change after annealing at 300 °C for 4 h. The results indicate that all the branched HB‐x copolymers are promising candidates for the polymer light‐emitting diodes due to their high quantum yield and spectral stability. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Hierarchical Equations of Motion Simulation of Temperature‐Dependent Two‐Dimensional Electronic Spectroscopy of the Chlorophyll a Manifold in LHCII

We simulated two‐dimensional electronic spectra (2DES) of the chlorophyll a manifold of light‐harvesting complex II (LHCII) at various temperatures (77, 110, 150, 190, 230, 273, and 293 K) using the hierarchical equations of the motion‐phase matching approach. We confirm the main excitation energy transfer pathways assignments within the chlorophyll a manifold of LHCII measured in a recent work (J. Phys. Chem. B 2019, 123, 6765–6775). The calculated transfer rates are also in general agreement with the measured rates. We also provided theoretical confirmation for the experimental assignments, as uphill and downhill energy transfer processes, of 2D spectral features that were reported in recent experimental reports. These temperature‐dependent features were also ascertained to follow the detailed‐balance principle.     

Laser Spectroscopic Study of Cold Gas‐Phase Host‐Guest Complexes of Crown Ethers

The structure, molecular recognition, and inclusion effect on the photophysics of guest species are investigated for neutral and ionic cold host‐guest complexes of crown ethers (CEs) in the gas phase. Here, the cold neutral host‐guest complexes are produced by a supersonic expansion technique and the cold ionic complexes are generated by the combination of electrospray ionization (ESI) and a cryogenically cooled ion trap. The host species are 3n‐crown‐n (3nCn; n = 4, 5, 6, 8) and (di)benzo‐3n‐crown‐n ((D)B3nCn; n = 4, 5, 6, 8). For neutral guests, we have chosen water and aromatic molecules, such as phenol and benzenediols, and as ionic species we have chosen alkali‐metal ions (M⁺). The electronic spectra and isomer‐specific vibrational spectra for the complexes are observed with various laser spectroscopic methods: laser‐induced fluorescence (LIF); ultraviolet‐ultraviolet hole‐burning (UV‐UV HB); and IR‐UV double resonance (IR‐UV DR) spectroscopy. The obtained spectra are analyzed with the aid of quantum chemical calculations. We will discuss how the host and guest species change their flexible structures for forming best‐fit stable complexes (induced fitting) and what kinds of interactions are operating for the stabilization of the complexes. For the alkali metal ion?CE complexes, we investigate the solvation effect by attaching water molecules. In addition to the ground‐state stabilization problem, we will show that the complexation leads to a drastic effect on the excited‐state electronic structure and dynamics of the guest species, which we call a “cage‐like effect”.     

Polytetrahydrofuran amphiphilic networks. IV. Swelling behavior of poly(acrylic acid)‐l‐polytetrahydrofuran and poly(methacrylic acid)‐l‐polytetrahydrofuran networks

Poly(acrylic acid)‐l‐polytetrahydrofuran (PAA‐l‐PTHF) and poly(methacrylic acid)‐l‐polytetrahydrofuran (PMAA‐l‐PTHF) networks were synthesized by the free‐radical copolymerization of hydrophobic polytetrahydrofuran diacrylates with hydrophilic acrylic acid and methacrylic acid. Their swelling behavior was studied. Both PAA‐l‐PTHF and PMAA‐l‐PTHF networks had four solubility parameters, which indicated that they exhibited not only the properties of both hydrophobic and hydrophilic segments but also the combined properties of these two segments. The swell of these two series of networks was composition‐dependent in organic solvents and water. The relationship between the equilibrium swelling ratio (SR_e) in nonpolar solvents and the composition of the networks [the weight fraction of the PTHF segment (PTHF%)] may be expressed with a linear equation: SR_e = A × PTHF% + B. A and B are parameters that relate to the interaction of hydrophilic and hydrophobic segments with nonpolar solvents and to the properties of the networks, respectively. Because of the presence of a ? COOH group, these two network series were pH‐sensitive when the content of hydrophilic segments was higher. The pH sensitivity of networks could be controlled not only by the composition of the networks but also by the hydrophobic degree of the hydrophilic segments. © 2001 John Wiley & Sons, Inc. J Polym Sci Part B: Polym Phys 39: 1784–1790, 2001     

Synthesis of novel pyrazolo[3,4‐d]pyrimidines peri‐fused with 1,4‐diazepine, 1,4‐thiazepine,and 1,2,4‐triazepine rings

A simple and efficient synthesis of novel ortho‐ and peri‐annulated heterocyclic systems—2,6,7,9‐tetrahydro‐8H‐pyrazolo[5,4,3‐de]pyrimido[4,5‐e][1,4]diazepine, 2,6,7,9‐tetrahydro‐8H‐pyrazolo[5,4,3‐de]pyrimido [5,4‐f][1,4]thiazepine, and 6,9‐dihydro‐2H‐pyrazolo[3,4,5‐ef]pyrimido[5,4‐f][1,2,4]triazepine is described. J. Heterocyclic Chem.,, (2012).