ChemInform Abstract: Ab initio SCF Studies of the Electronic Structures of Halogen Nitrates. Part 2. FNOx (x = 1, 2, 3).

The SCF calculations using 4-31G, 6-31G*/MP2, and PDZ/MP2 basis sets predict the relative stability for FNO₂ isomers to be FNO₂ > cis-FONO > trans-FONO.     

Geometry optimization and electronic structures of molecules H_3AXAH_3

The geometries of molecules H_3AXAH_3(X=O,S,Se and A=C,Si)have been optimizedusing STO-3G ab initio calculations and gradient method and the results are in good agreement withreported experimental values.From the STO-3G optimized geometries,we have also calculated theelectronic structures of these molecules using 4-31G and 6-31G basis sets to obtain the MO energies.atomic net charges and dipole moments.The ionization potentials calculated by 6-31G basis set are ingood agreement with experimental values.     

Comparative studies on the structures,infrared spectrum,and thermodynamic properties of phthalocyanine using ab initio Hartree–Fock and density functional theory methods

The molecular structure, vibrational spectrum, standard thermodynamic functions, and enthalpy of formation of free base phthalocyanine (Pc) have been studied using the density functional theory B3LYP procedure, as well as the ab initio Hartree–Fock method. Various basis sets 3‐21G, 6‐31G*, and LANL2DZ have been employed. The results obtained at various levels are discussed and compared with each other and with the available experimental data. It is shown that calculations performed at the Hartree–Fock level cannot produce a reliable geometry and related properties such as the dipole moment of Pc and similar porphyrin‐based systems. Electron correlation must be included in the calculations. The basis set has comparatively less effect on the calculated results. The results derived at the B3LYP level using the smaller 3‐21G and LANL2DZ basis sets are very close to those produced using the medium 6‐31G* basis set. The geometry of Pc obtained at the B3LYP level has D_2h symmetry and the diameter of the central macrocycle is about 4 Å. The enthalpy of formation of Pc in the gas phase has been predicted to be 1518.50 kJ/mol at the B3LYP/6‐311G(2d,2p)//B3LYP/6‐31G* level via an isodesmic reaction. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

FT-IR and FT-Raman vibrational spectra and molecular structure investigation of nicotinamide: A combined experimental and theoretical study

In this work, the experimental and theoretical spectra of nicotinamide (C₆H₆N₂O) are studied. FT-IR and FT-Raman spectra of title molecule in the liquid phase have been recorded in the region 4000–100 cm^?1. The structural and spectroscopic data of the molecule in the ground state have been calculated by using Hartree–Fock and density functional method (B3LYP) with the 6-31+G*(d, p) and 6-31++G* (d, p)basis set. The vibrational frequencies have been calculated and scaled values have been compared with the experimental FT-IR and FT-Raman spectra. The observed and calculated frequencies are found in good agreement. The DFT-B3LYP/6-31++G (d, p) calculations have been found are more reliable than the ab initio HF/6-31+G (d, p) calculations for the vibrational study of nicotinamide. The optimized geometric parameters (bond lengths and bond angles) are compared with experimental values of the molecule. The alteration of vibrational bands due to the substitutions in the base molecule is also investigated from their characteristic region of linked spectrum.     

The structure of 1-chlorosilatrane: An ab initio molecular orbital and a density functional theory study

The molecular geometries of the 1-chloro-, 1-fluoro-, 1-methyl-, and 1-hydrogenosilatranes were fully optimized by the restricted Hartree-Fock (HF) method supplemented with 3-21G, 3-21G(d), 6-31G(d), and CEP-31G(d) basis sets; by MP2 calculations using 6-31G(d) and CEP-31G(d) basis sets; and by GGA-DFT calculations using 6-31G(d5) basis set with the aim of locating the positions of the local minima on the energy hypersurface. The HF/6-31G(d) calculations predict long (>254 pm) and the MP2/CEP calculations predicted short (∼225 pm) equilibrium Si(SINGLE BOND)N distances. The present GGA-DFT calculations reproduce the available gas phase experimental Si(SINGLE BOND)N distances correctly. The solid phase experimental results predict that the Si(SINGLE BOND)N distance is shorter in 1-chlorosilatrane than in 1-fluorosilatrane. In this respect the HF results show a strong basis set dependence, the MP2/CEP results contradict the experiment, and the GGA-DFT results in electrolytic medium agree with the experiment. The latter calculations predict that 1-chlorosilatrane is more polarizable than 1-fluorosilatrane and also support a general Si(SINGLE BOND)N distance shortening trend for silatranes during the transition from gas phase to polar liquid or solid phase. The calculations predict that the ethoxy links of the silatrane skeleton are flexible. Consequently, it is difficult to measure experimentally the related bond lengths and bond and torsion angles. This is the probable origin of the surprisingly large differences for the experimental structural parameters. On the basis of experimental analogies, ab initio calculations, and density functional theory (DFT) calculations, a gas phase equilibrium (r_e) geometry is predicted for 1-chlorosilatrane. The semiempirical methods predict a so-called exo minimum (at above 310 pm Si(SINGLE BOND)N distance); however, the ab initio and GGA-DFT calculations suggest that this form is nonexistent. The GGA-DFT geometry optima were characterized by frequency analysis. © 1996 by John Wiley & Sons, Inc.     

Ab initio studies on several species of the formula X3YO and X3YOH

Ab initio molecular orbital calculations using both minimal and extended basis sets have been applied to two isoelectronic sets of molecules. One set corresponds to the 18 electron species H₃NO, H₃CO^– and H₃COH while the second set contains the 42 electron fluorinated molecules F₃NO, F₃CO^– and F₃COH. The geometries of these molecules have been optimized, using both the minimal STO-3G and the extended 4-31G basis sets. These comparative calculations reveal that the 4-31G basis produced structural parameters in much better agreement with experiment. The effect of includingd-orbitals in the basis set was also investigated. For the fluorinated oxides it has been found that the optimized 4-31G structures were only slightly altered by the addition ofd-orbitals. For H₃NO, on the other hand, the inclusion ofd-orbitals considerably shortens the N-O bond distance. Both H₃NO and CF₃OH, which are unknown experimentally, are theoretically predicted to be capable of existence. The electronic structures of these molecules have also been examined using electronic partitioning according to the Mulliken scheme.     

Structural and spectroscopic studies on 2-pyranones

Experimental methods of infrared, Raman and electronic absorption spectroscopy and DFT calculations using B3LYP functionals and 6-31G** and 6-311++G** basis sets have been used to understand the structural and spectral characteristics of 2-pyranones, 6-phenyl-4-methylsulfanyl-2-oxo-2H-pyran and 6-phenyl-4-methylsulfanyl-2-oxo-2H-pyran-3-carbonitrile in the electronic ground (S₀) and first excited (S₁) states. Information about the size, shape, charge density distribution and site of chemical reactivity of the molecules has been obtained by mapping electron density isosurface with electrostatic potential surfaces (ESP). Based on TD-DFT calculations using 6-31+G**5D basis set, an assignment of absorption peaks in the UV–VIS region has been suggested. The S₁ state is found to be a ¹(π,π*) state. A complete vibrational analysis has been attempted on the basis of experimental infrared and Raman spectra and calculated frequency and intensity of the vibrational bands and potential energy distribution over the internal coordinates. Characteristic vibrational bands of the 2-pyranone ring and methylsulfanyl and carbonyl groups have been identified.     

Raman spectra,conformational stability,structural parameters,vibrational assignment,and ab initio calculations for epifluorohydrin

The Raman spectra (3200–100 cm⁻¹) of epifluorohydrin, OCH₂CH(CH₂F), in variable solvents, as well as that of the gas have been recorded and several of the bands due to the two less stable conformers have been identified. The variable solvent studies were inconclusive on the relative conformer stabilities. The conformational energy differences and optimized geometries for all three conformers have been obtained from ab initio calculations with the 3–21G, 4–31G and 6–31G* basis sets. A normal coordinate analysis has also been performed for each conformer with a force field determined from the 3–21G basis set. Assignment of the vibrational fundamentals observed in the Raman spectra of the fluid phases is proposed based on the normal coordinate calculations. In the liquid phase, one of the conformers with a large dipole moment predominates and it appears to be the gauche-I form which is the only one found in the solid. Utilizing the three rotational constants previously reported for each conformer, along with restricted relative distances for several of the structural parameters among the conformers from ab initio calculations, r₀ structural parameters for the heavy atoms have been determined.     

An ab initio molecular orbital study of the deprotonation of amines

The geometries of the amines NH₂X and amido anions NHX^?, where X = H, CH₃, NH₂, OH, F, C₂H, CHO, and CN have been optimized using ab initio molecular orbital calculations with a 4-31G basis set. The profiles to rotation about the N? X bonds in CH₃NH^?, NH₂NH^?, and HONH^? are very similar to those for the isoprotic and isoelectronic neutral compounds CH₃OH, NH₂OH, and HOOH. The amines with unsaturated bonds adjacent to the nitrogen atoms undergo considerable skeletal rearrangement on deprotonation such that most of the negative charge of the anion is on the substituent. The computed order of acidity for the amines NH₂X is X = CN > HCO > F ≈ C₂H > OH > NH₂ > CH₃ > H and for the reaction NHX^? + H⁺ → NH₂X the computed energies vary over the range 373–438 kcal/mol.     

Synthesis,characterization, computational studies and biological activities of Co(II), Ni(II) and Cu(II) complexes of 2-Amino-1,3,4-thiadiazole derivatives

Abstract

Co(II), Ni(II), and Cu(II) complexes of 2-Amino-5-ethyl-1,3,4-thiadiazole (AET) and 2-Amino-5-(ethylthio)-1,3,4-thiadiazole (AEST) have been synthesized and characterized based on elemental analysis, magnetic susceptibility, infrared (4000–400 cm^?1), mass spectrometry (ESI and MALDI), UV–Vis (200–1100 nm) and thermal analysis (TGA/DTA). Molar conductance measurements proved that [M(L)₂(H₂O)₂]Cl₂·H₂O are electrolytic complexes where M represents Co, Ni, and Cu divalent metal ions. The geometrical isomerism of [M(L)₂(H₂O)₂]²⁺ ions were investigated by DFT-B3LYP calculations incorporated in Gaussian09 package; it favored the all trans isomers due to having the lowest energy points on the potential energy surface. The outcome of DFT-B3LYP quantum mechanical calculations using 6-31G(d) basis set favor six-coordinate sites via a bidentate ligand through exo amino and adjacent endo thiadiazole nitrogen (N₃) donors. These results were consistent with magnetic measurements combined with infrared and UV–Vis spectral interpretations. The predicted metal–ligand binding energies from B3LYP/6-31G(d) calculations follow the trend Cu²⁺>Ni²⁺>Co²⁺, in agreement with the Irving–Williams series. Both AET and AEST ligands and the synthesized complexes were screened for their antibacterial activity and the outcome was high antimicrobial activity of the complexes compared to the free ligands against one or more microbial species and in some cases (copper complexes) higher activity than standard drugs.     

He I and He II spectra of 2-halopyridines

The He I and He II ultraviolet photoelectron spectra of 2-fluoro-, 2-chloro-, 2-bromo-, and 2-iodopyridine have been recorded and interpreted in terms of a composite-molecule model. The sequence of the four lowest ionization energies for 2-fluoro- and 2-chloropyridine is: π₃ (1a₂) > n_N (11a₁) > π₂ (2b₁) > π_pyr (7b₂), whereas for 2-bromo- and 2-iodopyridine the assignment is: π₃ (1a₂) - π_X > n_N (11a₁) > π_X > π₂ (2b₁), where X represents a bromine and iodine lone-pair. Comparison of the He I and He II band intensities confirmed this assignment. However, ab initio calculations at the STO-3G*/STO-3G* and 6–31G**/STO-3G* levels did not agree with the sequence predicted by either the composite-molecule model, simple correlations and the He I/He II cross-section ratios. For the 2-fluoropyridine, a comparison using the HAM/3 model was found to be in agreement with this assignment.     

A study of the interaction energy between a glycoluril molecular clip and dihydroxybenzenes or diaminobenzenes: a justification for easy separation by affinity chromatography

Theoretical calculations were performed to determine the interaction energy between a glycoluril (GL) molecular clip and hydroxybenzenes (HBs) and aminobenzenes (ABs). The theoretical calculations on the GL and its interactions were carried out using the hybrid functional closed-shell RB3LYP and the 6-31G* basis set, employing gaussian 03. The stability in energy of the guest inside the GL, ΔE_T(1), was in the following order: m-DHB-GL > o-DHB-GL > m-THB-GL > m-DAB-GL > o-THB-GL. The geometric parameters, in particular the bond lengths are discussed for the host molecule GL and guest molecules DHB and DAB and their parameters are compared with the host-guest molecules DHB-GL and DAB-GL, respectively.     

A computational mechanistic study of the deamination reaction of melamine

A detailed computational study of the deamination reaction of melamine by OH^–, n H₂O/OH^–, n H₂O (where n = 1, 2, 3), and protonated melamine with H₂O, has been carried out using density functional theory and ab initio calculations. All structures were optimized at M06/6‐31G(d) level of theory, as well as with the B3LYP functional with each of the basis sets: 6‐31G(d), 6‐31 + G(d), 6‐31G(2df,p), and 6‐311++G(3df,3pd). B3LYP, M06, and ω B97XD calculations with 6‐31 + G(d,p) have also been performed. All structures were optimized at B3LYP/6‐31 + G(d,p) level of theory for deamination simulations in an aqueous medium, using both the polarizable continuum solvation model and the solvation model based on solute electron density. Composite method calculations have been conducted at G4MP2 and CBS‐QB3. Fifteen different mechanistic pathways were explored. Most pathways consisted of two key steps: formation of a tetrahedral intermediate and in the final step, an intermediate that dissociates to products via a 1,3‐proton shift. The lowest overall activation energy, 111 kJ mol^?1 at G4MP2, was obtained for the deamination of melamine with 3H₂O/OH^?.     

Performance of theoretical methods and basis sets on the molecular structure, atomisation and ionisation energies, electron affinity, and vibrational spectrum of silylene

This work compares the performance of theoretical methods and basis sets on the molecular structure, atomisation and ionisation energies, electron affinity, and vibrational spectrum of silylene. Silylene, its cation and anion have been studied in ¹ A ₁, ² A ₁ and ² B ₁ states, respectively, in the gas phase and C_2v symmetry. The methods considered are second-order Møller-Plesset perturbation theory (MP2), the density functional theory (DFT), Gaussian-2 (G2) and complete basis set methods (CBS-4M and CBS-Q). The basis sets used are 6-31G(d,p), 6-311G(d,p), 6-31++G(d,p) and 6-311++G(d,p). The functional used for the DFT method is B3LYP. Silylene and its cation and anion have been optimised using the MP2 and DFT methods and the named basis sets. Single-point energy calculations (G2, CBS-4M and CBS-Q) were performed using MP2/6-311++G(d,p) structures and these energies have been used to calculate atomisation energy, ionisation energy and adiabatic electron affinity. Frequency calculations were also done and the raw vibrational frequencies were assigned. It is interesting to note the close similarity between the predicted parameters and some of the available literature values. The results obtained are consistent and converge with different basis sets with improved size and quality. However, the parameters obtained are very much method dependent.     

Cubic force constants of the FH⋯OH2 and FH⋯O(CH3)2hydrogen-bonded complexes. An analyses of computed Ab initio SCF values

Ab intio SCF MO calculations of quadratic and cubic force constants of the FH? OH₂ and FH?O(CH₃)₂ dimers have been carried out, using a split-valence (6-31G) basis set. For the former complex, the effects of H₂O relaxation and of extension of the basis set (triple-zeta and triple-zeta plus polarization basis functions on the FH?O hydrogen bond) have been evaluated With the most extended basis set, the equilibrium geometry of the FH?OH₂ complex does not have a definite C_2v character, in contrast to previous calculations.     

Theoretical study in gas phase of linear and nonlinear optical properties of the ortho-, meta- and para-nitrophenol isomers

The linear (α), and nonlinear (β, γ) optical NLO properties of ortho-, meta- and para-nitrophenol (ONP, MNP and PNP) isomers have been calculated in gas phase by using ab initio (HF, MP2 and MP4) and density functional theory (DFT) (B3LYP, CAM-B3LYP) methods, with the 6-31+G(d,p) and 6-311+G(3d,3p) standard and the Sadlej specialized basis sets. These properties were evaluated both at static and at dynamic regime within the finite field FF numerical techniques and the time-dependent-Hartree–Fock approach at 1,910 nm, respectively. Additional calculations were performed for the β static hyperpolarizability of these isomers in presence of p-dioxane solvent with the Onsager Model and the SCRF-PCM approach, using B3LYP/6-31+G(d,p) and MP2/6-31+G(d,p) levels of theory. Additionally, CCSD/6-31+G(d,p) calculations were performed for the α, β and γ properties of PNP isomer. The B3LYP and MP2 α _ave results of the nitrophenol isomers are comparable to the experimental α _ave reports; while the tendency for the β _v calculated values (β _v PNP > β _v MNP > β _v ONP), that can be explained in terms of the O _x atomic charge of the –NO₂ group, does not follow exactly the experimental ones. The B3LYP γ _ave results are in correspondence to the experimental measurements, the correlation of which is r ² = 0.99. The use of FF methodology in conjunction with the B3LYP and MP2 methods and the 6-31+G(d,p) basis set show to be appropriate approaches to predict qualitative optical properties of Push–Pull like organic molecules, provided are considered the solvent effects or frequency dependence. However, to have a clear picture of the NLO properties of an isolated molecule, higher order correlation effects combined with specialized basis sets, frequency and solvent effects should be employed. We have demonstrated that MP4/Sadlej level of theory is able to reproduce NLO properties that can be considered equivalent to those from more sophisticated approaches, such as CCSD together with extended basis sets.     

Ab initio study of hydrogen bonding in the phenol–water system

Three hydrogen-bonded minima on the phenol-water, C₆H₅OH—H₂O, potential energy surface were located with 3–21G and 6–31G** basis sets at both Hartree–Fock and MP2 levels of theory. MP2 binding energies were computed using large “correlation consistent” basis sets that included extra diffuse functions on all atoms. An estimate of the effect of expanding the basis set to the triple-zeta level (multiple f functions on carbon and oxygen and multiple d functions on hydrogen) was derived from calculations on a related prototype system. The best estimates of the electronic binding energies for the three minima are –7.8, –5.0, and –2.0 kcal/mol. The consequences of uncertainties in the geometries and limitations in the level of correlation recovery are analyzed. It is suggested that our best estimates will likely underestimate the complete basis set, full CI values by 0.1–0.3 kcal/mol. Vibrational normal modes were determined for all three minima, including an MP2/6–31G** analysis for the most strongly bound complex. Computational strategies for larger phenol–water complexes are discussed. © John Wiley & Sons, Inc.     

The effect of including polarization functions on the geometrical parameters calculated for benzene,fluorobenzene and cyanobenzene

The geometrical parameters for benzene, fluorobenzene, and cyanobenzene have been calculated using the 6–31G*(5D) and 6–31G** basis sets, and, in addition, the 6–31 + G*(5D) basis set in the case of fluorobenzene. Compared to previous results obtained using the 6-31G basis set there are minor changes in the magnitude of the bond lengths and angles in the ring, but the relative values remain unaltered. The values for the ipso angles in fluorobenzene and cyanobenzene are again somewhat less than those reported from microwave and/or electron diffraction studies. The distortion of the ring is characterized as either an elongation or a flattening with respect to the F–C₁ ⃛C₄ and NC C₁C₄ axes, and the shape is characterized as either a broadening or a narrowing across the ring just below the F and Cn group, i.e., an increase or a decrease in the C₂ ⃛C₆ internuclear distance, relative of the C₃ ⃛C₅ distance.     

FT-IR, FT-Raman vibrational spectra and molecular structure investigation of 2-chloro-4-methylaniline: A combined experimental and theoretical study

In this work, the experimental and theoretical vibrational spectra of 2-chloro-4-methylaniline (2Cl4MA, C₇H₈NCl) were studied. FT-IR and FT-Raman spectra of 2Cl4MA in the liquid phase have been recorded in the region 4000–400 cm⁻¹ and 3500–50 cm⁻¹, respectively. The structural and spectroscopic data of the molecule in the ground state have been calculated by using Hartree-Fock (HF) and density functional method (B3LYP) with the 6-31G(d), 6-31G(d,p), 6-31+G(d,p), 6-31++G(d,p) and 6-311G(d), 6-311G(d,p), 6-311+G(d,p), 6-311++G(d,p) basis sets. The vibrational frequencies have been calculated and scaled values have been compared with experimental FT-IR and FT-Raman spectra. The observed and calculated frequencies are found to be in good agreement. The complete assignments were performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The DFT-B3LYP/6-311++G(d,p) calculations have been found more reliable than the ab initio HF/6-311++G(d,p) calculations for the vibrational study of 2Cl4MA. The optimized geometric parameters (bond lengths and bond angles) were compared with experimental values of aniline and p-methylaniline molecules.