Synthesis of optically active polynucleotide analogs with poly(vinyl alcohol)s as backbones and adenine and 5-bromouracil derivatives as pendants

The optically active polynucleotide analogs were prepared by grafting nucleic acid base derivatives onto poly(vinyl alcohol). The (R)-ethyl 2-(5-bromouracil-1-yl)propanoate was obtained either by reaction of 5-bromouracil sodium salt with (S)-ethyl 2-[(methylsulfonyl)oxy]propanoate or reaction of 5-bromouracil with (S)-ethyl lactate in the presence of triphenyl phosphine and diethyl azodicarboxylate. Subsequent hydrolysis of the ester is aqueous acid provided the optically pure (R)-bromouracilypropanoic acid. The monomer model compounds were prepared by an esterification reaction of the pendant groups with 3-pentyl alcohol in the presence of dicyclohexylcarbodiimide and a catalytic amount of 4-pyrrolidinopyridine. Poly(vinyl alcohol) underwent reaction with the (R)-bromouracilylpropanoic acid or the (R)-adeninylpropanoic acid in the presence of dicyclohexylcarbodiimide and a catalytic amount of 4-pyrrolidinopyridine. The resulting polymers were optically active and percents grafting were almost quantitative.     

Synthesis of optically active polynucleotide analogs with polytrimethylenimine backbones and thymine moieties

Polynucleotide analogs with polytrimethylenimine backbones and optically active 2-(thymin-1-yl)propionic acids as pendants were prepared. Linear polytrimethylenimines were obtained by ring-opening polymerization of 2-phenyl-5,6-dyhydro-4H-1,3-oxazine and subsequent hydrolysis of the resulting polymers. 2-(Thymin-1-yl)propionic acids were reacted with N-hydroxy succinimide to form active esters. Optical purities of active esters were determined by NMR with chiral chemical shift reagents. The polynucloetide analogs and related monomer and dimer model compounds were prepared by grafting reactions using active esters.     

Synthesis of polyamide containing optically active thymine derivative as a grafted pendant

A new route to polyamides containing optically active thymine groups as pendants has been established. The method is based on the grafting of (–) and (±)-2-(thymin-1-yl)propionic acid [(–) and (±) TPA] onto a polyamide containing hydroxyl groups. The hydroxy polyamide was prepared by selective N-acylation of an active diester of N-hydroxy-5-norborene-2,3-dicarboxamide (HONB), N,N'-(isophthaloyl-dioxy)-bis(5-norbornene-2,3-dicarboximide) (IPBONB), with 1,3-diamino-2-hydroxypropane (AHP). Model compounds (?) and (±)-(1,3-dibenzoylamino-2-propyl)2-(thymin-1-yl)propionate[(?) and (±) (BAPTP)] were prepared by direct, low-temperature esterification before synthesizing the polymer.     

Molecular Clefts Derived from 9,9′-spirobi[9H-fluorene] for enantioselective complexation of pyranosides and dicarboxylic acids

The molecular clefts (R)- and (S)- 3 , incorporating 9,9′-spirobi[9H-fluorene] as a spacer and two N-(5,7-dimethyl-1,8-naphthyridin-2-yl)carboxamide (CONH(naphthy)) units as H-bonding sites were prepared via the bis(succinimid-N-yl esters) of (R)-and (S)-9,9′-spirobi[9H-fluorene]-2,2′-dicarboxylic acid ( 5 ). Derivative 6 , with one CONH(naphthy) unit and one succinimid-N-yl ester residue allowed easy access to spirobifluorene clefts with two different H-bonding sites, as exemplified by the synthesis of 4 . Binding studies with (R)- and (S)- 3 and optically active dicarboxylic acids in CDCl₃ exhibited differences in free energy of the formed diastereoisomeric complexes (Δ(ΔGº)) between 0.5 and 1.6 kcal mol^?1 (T 300 K). Similar enantioselectivities were observed with the spirobifluorene clefts (R)- and (S)- 1 , bearing two N-(6-methylpyridin-2-yl)carboxamide (CONH(py)) H-bonding sites. The thermodynamic quantities ΔHº and ΔSº for the recognition processes with (R)- and (S)- 1 were determined by variable-temperature ¹H-NMR titrations and compared to those with (R)- and (S)- 2 , which have two CONH(py) moieties attached to the 6,6′-positions of a conformationally more flexible 1,1′-binaphthyl cleft. All association processes showed high enthalpic driving forces which are partially compensated by unfavorable changes in entropy. Pyranosides bind to the optically active clefts 1 and 3 in CDCl₃ with ?ΔGº = 3.0–4.3 kcal mol^?1. Diastereoisomeric selectivities up to 1.2 kcal mol^?1 and enantioselectivities up to 0.4 kcal mol^?1 were observed. Cleft 4 and N-(5,7-dimethyl-1,8-naphthyridin-2-yl)acetamide ( 25 ) complexed pyranosides 22–24 as effectively as 3 indicating that only one CONH(naphthy) site in 3 associates strongly with the sugar derivatives. Based on the X-ray crystal structure of 3 , a computer model for the complex between (S)- 3 and pyranoside 22 was constructed. Molecular-dynamics (MD) simulations showed that differential geometrical constraints are at the origin of the high enantioselectivity in the complexation of dicarboxylic acid (S)- 7 by (R)- and (S)- 1 and (R)- and (S)- 3 .     

Synthesis of diols containing nucleic acid bases and their polyesters

Preparation of four diols containing nucleic acid bases derived from 3-(thymin-1-yl)propanoic acid (3-TPA) and 3-(uracil-1-yl)propanoic acid (3-UPA), and the corresponding model polymers of polynucleotides with linear polyester backbone and nucleic acid base derivative as pendant side chains are described. N-(1′,3′-Dihydroxy-2′-methyl-2′-propyl)-3-(thymin-1-yl)propionamide ( VIa , 3-HMPTPA), N-(1′3′-dihydroxy-2′-methyl-2′-propyl)-3-(uracyl-1-yl)propionamide ( VIb , 3-HMPUPA) and their isomers, N(β,β-dihydroxyethyl)-3-(thymin-1-yl)propionamide ( VIIa , 3-HETPA), and N-(β,β-dihydroxyethyl)-3-(uracil-1-yl)propionamide ( VIIb , 3-HEUPA) were synthesized through the selective N-acylation of 2-methyl-2-amino-1,3-propanediol and diethanolamine with 3-TPA and 3-UPA, respectively, by the active ester-N-hydroxyl-1,4-epoxy-5-cyclohexene-2,3-dicarboximide (HOEC) method. The resulting diols were polycondensed with active diamide of benzotriazole (HBT) such as 1,1′-(isophthaloyl)bis-benzotriazole (IPBBT), giving polyesters containing thymine and uracil derivatives as the side group, by the selective O-acrylation of active amide-benzotriazole method.     

Naphthopyranquinone Antibiotics: Novel enantioselective syntheses of frenolicin B and some of its stereoisomers

Two new enantioselective syntheses of the naphthopyranquinone antibiotic frenolicin B ( 1 ), of its enantiomer 2 , and of its diastereoisomers 3 and 4 were accomplished using two different routes from optically active β-Hydroxy esters (R)- and (S)- 11 and 18. β-Hydroxy esters (R)- and (S)- 11 were prepared stereoselectively from optically active sulfenylacetates (S)- and (R)- 10 , respectively (Scheme 2, Method A). Alternatively, compound 18 was obtained in excellent yield by enantioselective hydrogenation of the corresponding β-keto ester 17 , using a chiral ruthenium-complex catalyst (Scheme 3, Method B). Subsequently, compounds (S)- 11 and 18 were transformed into frenolicin B (1). In analogy, Stereoisomers 2–4 were prepared from (S)- and (R)- 11 in good yields.     

Study of the effect of the nature of the side chain in esters of α-amino acids on the diastereoselectivity of condensation with 5(4H)-oxazolone in the synthesis of dipeptides with N-terminal N-acetylphenylalanine

Conditions for fast racemization of 5(4H)-oxazolones prepared from N-acylphenylalanine were found. Reactions of 4-benzyl-2-methyl-5(4H)-oxazolone with amino acid esters proceed diastereoselectively to give predominantly dipeptides comprising R-phenylalanine. The diastereoselectivity increases with complication of the structure of the side chain in the amino acid esters.     

Synthese von optisch aktiven,natürlichen Carotinoiden und strukturell verwandten Naturprodukten. VII. Synthese von (3R)-3-Hydroxyretinol, (3R)-3-Hydroxyretinal und (3R)-3-Hydroxyretinsäure

Synthesis of optically active natural carotenoids and structurally related compounds. VII. Synthesis of (3R)-3-hydroxyretinol, (3R)-3-hydroxyretinal and (3R)-3-hydroxyretinoic acid The synthesis of (3R)-3-hydroxyretinol, ( 7 ), (3R)-3-hydroxyretinal ( 9 ) and (3R)-3-hydroxyretinoic acid ( 5 ) according to the building principle C₁₅ + C₅ = C₂₀ is reported utilizing the optically active C₁₅-phosphonium salt 2 and the C₅-aldehyde ester 3 .     

Preliminary studies on a novel synthesis of β-amino acids: stereocontrolled transformation of d- and l-glyceraldehyde into 3-amino-2-(2′,2′-dimethyl-1′,3′-dioxolan-4′-yl)propanoic acids

A stereocontrolled synthesis of the methyl ester of (2S)-3-amino-2-((4′S)-2′,2′-dimethyl-1′,3′-dioxolan-4′-yl)propanoic acid from d-glyceraldehyde is described for the first time. This method involves the stereoselective Michael addition of the lithium salt of tris(phenylthio)methane to (S)-2,2-dimethyl-4-((E)-2-nitrovinyl)-1,3-dioxolane followed by hydrolysis of the resulting (4S)-2,2-dimethyl-4-((2′S)-3′-nitro-1′,1′,1′-tris(phenylthio)propan-2′-yl)-1,3-dioxolane to (2S)-methyl 2-((4′S)-2′,2′-dimethyl-1′,3′-dioxolan-4′-yl)-3-nitropropanoate, which was finally reduced to the target compound. A similarly stereocontrolled transformation of l-glyceraldehyde into (2R)-methyl 3-amino-2-((4′R)-2′,2′-dimethyl-1′,3′-dioxolan-4′-yl)propanoate is also described.     

Syntheses of polyethylenimine containing asymmetric nucleic acid base derivatives as grafted pendants

Preparations of new model polymers of polynucleotides with linear polyethylenimine (PEI) backbones and optically active nucleic acid base derivatives as pending side chains are described. (±)-2-(Thymin-1-yl)propionic acid (II) and (±)-2-(adenin-9-yl)propionic acid (IV) were synthesized. These carboxylic acid derivatives were grafted onto PEI at the imino nitrogen by the p-nitrophenyl active ester method. The enantiomeric pairs of II were optically resolved with quinine to yield (?) and (+)-2-(thymin-1-yl)propionic acid (VII and VIII). VII and VIII were grafted onto PEI through amide bond by direct coupling with diethylphosphoryl cyanide to give optically active graft polymers. The related monomer and dimer model compounds were also prepared by the same method from diethylamine and dimethylethylene diamine, respectively.     

Optically active imidazole-containing polymers

In order to investigate the stereospecificity of enzyme-catalyzed reactions, an optically active copolymer of 4(5)-vinylimidazole and 2,5(S)-dimethyl-1-hepten-3-one was synthesized, and its effects on the solvolytic rates, in ethanol-water, of the p-nitrophenyl and 4-carboxy-2-nitrophenyl esters of 3(R)- and 3(S)-methylpentanoic acid and of the commercially available N-carbobenzoxy-(R)- and (S)-phenylalanine p-nitrophenyl esters were investigated. The optically active comonomer was prepared by thermal decomposition of solid (+)-1-piperidino-2,5(S)-dimethylheptan-3-one hydrochloride, which was obtained from the reaction of 2(S)-methylbutyllithium with 3-piperidino-2-methylpropionitrile. The 3(R)-methylpentanoic acid was prepared in 92% optical purity from L -alloisoleucine via diazotization in concentrated hydrobromic acid and subsequent reductive debromination with zinc amalgam in dilute hydrochloric acid. In the optically active copolymer-catalyzed solvolyses of the optically active esters performed at pH values of 6–8 no significant differences between the solvolytic rates of (R) and (S) isomers of substrates were observed. Poly-L -histidine was also employed as a catalyst for the solvolyses of these substrates. At pH 6.0 in ethanol–water the latter catalyst also failed to exhibit specificity towards (R) and (S) substrates.     

Synthesis of diols containing 5-benzyluracil base and their polymers

Preparation of analogs of acyclic nucleoside, two diols containing 5-benzyluracil base derived from 2-(5-benzyluracil-1-yl)propanoic acid (BUPA), and the corresponding model polymers of polynucleotide with linear polyester backbone and 2-(5-benzyluracil-1-yl)propionamido-type pendant as a side chain are described. N-(1′,3′-Dihydroxy-2′-methyl-2′-propyl)-2-(5-benzyluracil-1-yl)propionamide (HEBUPA) and its isomer N(β,β′-dihydroxyethyl)-2-(5-benzyluracil-1-yl)propionamide (HEBUPA) were prepared through the selective N-acylation of primary aminodiol, 2-methyl-2-amino-1,3-propanediol and secondary aminodiol, diethanolamine with BUPA, respectively, by the active ester-N-hydroxy-5-norbornene-2,3-dicarboximide (HONB) method. The resulting diols were polycondensed with active diamide of benzotriazole (HBT) such as 1,1′-(terephthaloyl)bisbenzotriazole (PBBT), 1,1′-(isophthaloyl)bisbenzotriazole (IPBBT), 1,1′-(sebacocyl)bisbenzotriazole (SeBBT), giving semirigid and flexible polyesters containing 5-benzyluracil derivative as the side group, by the selective O-acylation of active diamide-benzotriazole technique. Diols HMBUPA and HEBUPA were found to be very potent inhibitors of uridine phosphorylase isolated from Sarcoma 180 cells, with K_i values of 0.13 and 0.11 μM, respectively.     

Easy access to optically active Hagemann's esters

The synthesis of optically active Hagemann's esters was investigated. The starting materials in this approach were enamino esters (R,Z)-8, prepared through the condensation of keto ester 6 with (R)-1-phenylethylamine 7. Michael addition reaction of the enamino esters (R,Z)-8 with methyl vinyl ketone gave the expected adducts 10 with good e.e.s of 93–96%. Subsequent annulation of the adducts furnished optically active Hagemann's esters.     

A novel method for asymmetric synthesis of both enantiomers of α-substituted carboxylic acid derivatives from optically active 1-chlorovinyl p-tolyl sulfoxides and lithium ester enolates with 1,4-chiral induction from the sulfur chiral center

Treatment of optically active 1-chlorovinyl p-tolyl sulfoxides, which were synthesized from symmetrical ketones and (R)-(−)-chloromethyl p-tolyl sulfoxide in three steps, with lithium enolate of carboxylic acid tert-butyl esters gave optically active adducts having a substituent at the α-position with high 1,4-chiral induction from the sulfur chiral center in high yields. The adducts were converted to optically active esters and carboxylic acids having a chiral center at the α-position. When this addition reaction was carried out with the ester enolate generated from excess carboxylic acid tert-butyl ester with LDA in the presence of HMPA, the diastereomer of the adduct was obtained. By using the two reaction conditions for the generation of the ester enolates, a new method for asymmetric synthesis of both enantiomers of carboxylic acid derivatives having a substituent at the α-position from the one chiral source, (R)-(−)-chloromethyl p-tolyl sulfoxide, was realized.     

Stereoselective synthesis of biologically active tetronic acids

(4R)-3-Amino-4-trimethylsilyloxy-2-alkenoates (R)-3, obtained from O-trimethylsilyl protected optically active cyanohydrins (R)-1 via the Blaise reaction, are hydrolyzed under mildly acidic conditions to give optically active tetronic acids (R)-4 without racemization. From the follow-up reactions of (R)-4 investigated, only methylation with diazomethane afforded the biologically active tetronic acid derivative (R)-5a without racemization whereas acylation and reductive alkylation, respectively, resulted in partial racemization or failed on the whole.     

Synthesis and characterization of poly(2-amino-2-methylpropyl)acrylamide,poly(2-amino-2-methylbutyl)acrylamide,and copolymers of polyacrylamide

Polyacrylamides possessing an amino group at the terminus of the branch chain as the potential site for amino acid and/or nucleic acid base grafting have been prepared. This type of polyacrylamide would provide a substantial spacing distance between the polymer main chain and pendant groups. Poly(2-amino-2-methylpropyl)acrylamide (PDMPA) and optically active poly(2-amino-2-methylbutyl)acrylamide (PDMBA) were characterized using vapor phase osmometry (VPO), gel permeation chromatography (GPC), and dilute solution viscometry. In addition, copolymers of poly(2-amino-2-methylpropyl)acrylamide with N-vinylpyrrolidinone, N-vinylimidazole, and H(5)-vinylimidazole, were prepared.     

Synthesis of poly(vinylamine) containing asymmetric nucleic acid base derivatives as grafted pendants

The preparations of new model polymers of polynucleotides with stereoregular poly(vinylamine) (PVAm) backbones and an optically active nucleic acid base derivative as a pending side chain are described. The grafting of (±)-, (+)-, and (?)-2-(thymin-1-yl) propionic acid to linear PVAm prepared either by hydrolysis of poly(vinyl acetamide) or poly(vinyl-t-butyl carbamate) has proven to be more difficult than the case of polyethyleneimine. This may be due to a combination of the low solubility and steric factors of PVAm. PVAm formed a complex with oximes such as ethyl-2-hydroxyimino cyanoacetate (EHICA), which activates the amino group of PVAm; it became soluble in polar solvents and gave higher percent graft. These carboxylic acid derivatives were grafted onto PVAm through amide bonds by direct coupling with sulfonic acid esters of hydroxybenzotriazoles to give optically active graft polymers. These coupling agents were found to be much superior reagents than DEPC regarding racemization. The related monomer and dimer model compounds were also prepared by the same method from 3-aminopentane and (?)-, (+)-, and meso-2,4-diaminopentane, respectively. The dimer models were separated and purified by HPLC to give models for isotactic, heterotactic, and syndiotactic polymer models. The enantiomeric purity of the optically active monomer model was determined by 360-MHz NMR spectroscopy using optically active shift reagents.     

Efficient Synthesis and Practical Resolution of 1-(Naphthalen-1-yl)ethanamine,a Key Intermediate for Cinacalcet

An efficient synthesis of 1-(naphthalen-1-yl)ethanamine ( RS -2) and its practical resolution to optically pure (1R)-(naphthalen-1-yl)ethanamine ( R -(+)-2), a key intermediate in the synthesis of cinacalcet hydrochloride (1), is described. The resolution of RS -2 using R-(?)-mandelic acid as a resolving agent in ethanol was established on an industrial scale to give pure R -(+)-2 with >99.8% ee after liberation of the amine from its mandelate salt. An efficient process for the racemization of undesired isomer S -(?)-2 is also provided to maximize the yield of desired enantiomer.     

Novel resolution of chiral lactams

A practical method of resolving chiral lactams, e.g. 1 , has been evolved, based on the hydroxymethylation of the lactam, followed by esterification of the product 2 with an optically active N-protected amino acid derivative, e.g. N-benzyloxycarbonylphenylalanine pentafluorophenyl ester 3 . Chromatographic separation of the unreacted hydroxymethylated lactam 2 and the ester 4 and subsequent dehydroxymethylation of the former and aminolysis of the latter afforded pure enantiomer, (R)- 1 and (S)- 1 .     

Synthesis of antimicrobial agents. II. Syntheses and antibacterial activities of optically active 7-(3-hydroxypyrrolidin-1-yl)quinolones

Two optically active isomers of 1-ethyl-6,8-difluoro-1,4-dihydro-7-(3-hydroxypyrrolidin-1-yl)-4-oxoquinoline-3-carboxylic acid ( 10 ) were prepared. One of the isomer, 7-[(3S)-hydroxypyrrolidin-1-yl] derivative 8 , was about 4 times more potent in vitro than the other, 7-[(3R)-hydroxypyrrolidin-1-yl] derivative 4 , and approximately two times more active than the racemate, 7-[(3RS)-hydroxypyrrolidine-1-yl] derivative 10. Optical active 8 was the most active in in vivo, followed by 10 , and 4 was the least active compound. But, they were more potent than CI-934 12 and norfloxacin. From the results, (3S)-hydroxypyrrolidinyl group was found to be one of the beneficial group for PCA-anti-bacterial agent.