Characterization of hydrated Na+(phenol) and K+(phenol) complexes using infrared spectroscopy

Hydrated alkali metal ion-phenol complexes were studied to model these species in aqueous solution for M=Na and K. IR predissociation spectroscopy in the O-H stretch region was used to analyze the structures of M+(Phenol)(H2O)n cluster ions, for n = 1-4. The onset of hydrogen bonding was observed to occur at n=4. Ab initio calculations were used to qualitatively explore the types of hydrogen-bonded structures of the M+(Phenol)(H2O)4 isomers. By combining the ab initio calculations and IR spectra, several different structures were identified for each metal ion. In contrast to benzene, detailed in a previous study of Na+(Benzene)n(H2O)m [J. Chem. Phys. 110, 8429 (1999)], phenol is able to bind directly to Na+ even in the presence of four waters. This is likely the result of the sigma-type interaction between the phenol oxygen and the ion. With K+, the dominant isomers are those in which the phenol O-H group is involved in a hydrogen bond with the water molecules, while with Na+, the dominant isomers are those in which the phenol O-H group is free and the water molecules are hydrogen-bonded to each other. Spectra and ab initio calculations for the M+(Phenol)Ar cluster ions for M=Na and K are reported to characterize the free phenol O-H stretch in the M+(Phenol) complex. While pi-type configurations were observed for binary M+(Phenol) complexes, sigma-type configurations appear to dominate the hydrated cluster ions.     

Kinetic isotope effects for Cl + CH4 ⇌ HCl + CH3 calculated using ab initio semiclassical transition state theory

Calculations were carried out for 25 isotopologues of the title reaction for various combinations of (35)Cl, (37)Cl, (12)C, (13)C, (14)C, H, and D. The computed rate constants are based on harmonic vibrational frequencies calculated at the CCSD(T)/aug-cc-pVTZ level of theory and X(ij) vibrational anharmonicity coefficients calculated at the CCSD(T) /aug-cc-pVDZ level of theory. For some reactions, anharmonicity coefficients were also computed at the CCSD(T)/aug-cc-pVTZ level of theory. The classical reaction barrier was taken from Eskola et al. [J. Phys. Chem. A 2008, 112, 7391-7401], who extrapolated CCSD(T) calculations to the complete basis set limit. Rate constants were calculated for temperatures from ～100 to ～2000 K. The computed ab initio rate constant for the normal isotopologue is in good agreement with experiments over the entire temperature range (～10% lower than the recommended experimental value at 298 K). The ab initio H/D kinetic isotope effects (KIEs) for CH(3)D, CH(2)D(2), CHD(3), and CD(4) are in very good agreement with literature experimental data. The ab initio (12)C/(13)C KIE is in error by ～2% at 298 K for calculations using X(ij) coefficients computed with the aug-cc-pVDZ basis set, but the error is reduced to ～1% when X(ij) coefficients computed with the larger aug-cc-pVTZ basis set are used. Systematic improvements appear to be possible. The present SCTST results are found to be more accurate than those from other theoretical calculations. Overall, this is a very promising method for computing ab initio kinetic isotope effects.     

SACM/CT Study of the dissociation/recombination dynamics of hydrogen peroxide on an ab initio potential energy surface. Part II. Specific rate constants k(E,J), thermal rate constants k infinity(T), and lifetime distributions

Statistical adiabatic channel model/classical trajectory (SACM/CT) calculations of the dissociation/recombination dynamics of hydrogen peroxide, H(2)O(2) <--> 2HO, have been performed on an ab initio potential energy surface by Kuhn, Rizzo, Luckhaus, Quack, and Suhm (J. Chem. Phys. 1999, 111, 2565). Specific rate constants k(E,J), thermal rate constants k(infinity)(T), and lifetime distributions are determined. After averaging over J, the derived k(E,J) are in quantitative agreement with non-exponential time-profiles of HO formation recorded after overtone excitation of H(2)O(2) near the dissociation threshold by Scherer and Zewail (J. Chem. Phys. 1987, 87, 97). The thermal high pressure rate constants for HO recombination agree with experimental data as well and can be represented by k(rec,infinity)/10(-10) cm(3) molecule(-1) s(-1) approximately [0.376 (298 K/T)(0.47) + 0.013 (T/298 K)(0.74)] over the range 60-1500 K. Non-statistical lifetime distributions are suggested not to have been of major relevance for the available experiment.     

A global 12-dimensional ab initio potential energy surface and dynamical studies for the SiH4+H-->SiH3+H2 reaction

A global 12-dimensional ab initio interpolated potential energy surface (PES) for the SiH(4)+H-->SiH(3)+H(2) reaction is presented. The ab initio calculations are based on the unrestricted quadratic configuration interaction treatment with all single and double excitations together with the cc-pVTZ basis set, and the modified Shepard interpolation method of Collins and co-workers [K. C. Thompson et al., J. Chem. Phys. 108, 8302 (1998); M. A. Collins, Theor. Chem. Acc. 108, 313 (2002); R. P. A. Bettens and M. A. Collins, J. Chem. Phys. 111, 816 (1999)] is applied. Using this PES, classical trajectory and variational transition state theory calculations have been carried out, and the computed rate constants are in good agreement with the available experimental data.     

Kinetic isotope effects for the H2 + C2H ↔ C2H2 + H reaction based on the ab initio calculations and a global potential energy surface

In the present paper, kinetic isotope effects of the title reaction are studied with canonical variational transition state theory on the modified Wang Bowman (MWB) potential energy surface (PES) (Chem Phys Lett 2005, 409, 249) and the ab initio calculations at the quadratic configuration interaction (QCISD (T, full))/aug‐cc‐pVTZ//QCISD (full)/cc‐pVTZ level. The calculated rate constants for the isotopic variants of this title reaction on the MWB PES have good agreement with those of the present ab initio calculations over the temperature range of 20–5000 K for the forward reactions and 800–5000 K for the reverse reactions, respectively. In particular, the forward rate constants for the title reaction and its isotopically substituted reactions have negative temperature dependences at about 40 K. Rate expressions are presented for all the studied reactions. © 2010 Wiley Periodicals, Inc. Int J Chem Kinet 42: 289–298, 2010     

Ab initio potential and dipole moment surfaces for water. II. Local-monomer calculations of the infrared spectra of water clusters

We employ recent flexible ab initio potential energy and dipole surfaces [Y. Wang, X. Huang, B. C. Shepler, B. J. Braams, and J. M. Bowman, J. Chem. Phys. 134, 094509 (2011)] to the calculation of IR spectra of the intramolecular modes of water clusters. We use a quantum approach that begins with a partitioned normal-mode analysis of perturbed monomers, and then obtains solutions of the corresponding Schro?dinger equations for the fully coupled intramolecular modes of each perturbed monomer. For water clusters, these modes are the two stretches and the bend. This approach is tested against benchmark calculations for the water dimer and trimer and then applied to the water clusters (H(2)O)(n) for n = 6-10 and n = 20. Comparisons of the spectra are made with previous ab initio harmonic and empirical potential calculations and available experiments.     

A quasiclassical trajectory study of collisional energy transfer and dissociation in He + H2(v,j) using a new potential energy surface

Quasiclassical trajectories for He + H2 were carried out using the recent ab initio potential of Boothroyd, Martin, and Peterson (J. Chem. Phys. 2003, 119, 3187) and results for the 348 (v, j) states of H2 are compared to those of earlier calculations that used the potential of Wilson, Kapral, and Burns (Chem. Phys. Lett. 1974, 24, 4884). Examined are the cross sections for energy transfer and dissociation, the extent of threshold elevation, and the interconversion of vibrational and rotational energy. Implications for modeling the interstellar medium are discussed.     

Correlation energy extrapolation by intrinsic scaling. II. The water and the nitrogen molecule

The extrapolation method for determining benchmark quality full configuration-interaction energies described in preceding paper [L. Bytautas and K. Ruedenberg, J. Chem. Phys. 121, 10905 (2004)] is applied to the molecules H(2)O and N(2). As in the neon atom case, discussed in preceding paper [L. Bytautas and K. Ruedenberg, J. Chem. Phys. 121, 10905 (2004)] remarkably accurate scaling relations are found to exist between the correlation energy contributions from various excitation levels of the configuration-interaction approach, considered as functions of the size of the correlating orbital space. The method for extrapolating a sequence of smaller configuration-interaction calculations to the full configuration-interaction energy and for constructing compact accurate configuration-interaction wave functions is also found to be effective for these molecules. The results are compared with accurate ab initio methods, such as many-body perturbation theory, coupled-cluster theory, as well as with variational calculations wherever possible.     

Rate constants and branching ratios for the reaction of CH radicals with NH3: a combined experimental and theoretical study

The reaction between CH radicals and NH(3) molecules is known to be rapid down to at least 23 K {at which temperature k = (2.21 ± 0.17) × 10(-10) cm(3) molecule(-1) s(-1): Bocherel ; et al. J. Phys. Chem. 1996, 100, 3063}. However, there have been only limited theoretical investigations of this reaction and its products are not known. This paper reports (i) ab initio quantum chemical calculations on the energy paths that lead to various reaction products, (ii) calculations of the overall rate constant and branching ratios to different products using transition state and master equation methods, and (iii) an experimental determination of the H atom yield from the reaction. The ab initio calculations show that reaction occurs predominantly via the initial formation of a datively bound HC-NH(3) complex and reveal low energy pathways to three sets of reaction products: H(2)CNH + H, HCNH(2) + H, and CH(3) + NH. The transition state calculations indicate the roles of "outer" and "inner" transition states and yield rate constants between 20 and 320 K that are in moderate agreement with the experimental values. These calculations and those using the master equation approach show that the branching ratio for the most exothermic reaction, to H(2)CNH + H, is ca. 96% throughout the temperature range covered by the calculations, with those to HCNH(2) + H and CH(3) + NH being (4 ± 3)% and <0.3%, respectively. In the experiments, multiple photon dissociation of CHBr(3) was used to generate CH radicals and laser-induced fluorescence at 121.56 nm (VUV-LIF) was employed to observe H atoms. By comparing signals from CH + NH(3) with those from CH + CH(4), where the yield of H atoms is known to be unity, it is possible to estimate that the yield of H atoms from CH + NH(3) is equal to 0.89 ± 0.07 (2σ), in satisfactory agreement with the theoretical estimate.     

Adsorption of polyacrylic acid on aluminium oxide: DRIFT spectroscopy and ab initio calculations

Diffuse reflectance Fourier transform infrared (DRIFT) spectroscopy was used to study the adsorption process of the water-soluble polyacrylic acid (PAA) polymer on hydrous δ-Al₂O₃. Vibrational assignment of PAA, sodium polyacrylate, (Na–PA) and the PA-oxide surface complex was achieved by comparison of observed band position and intensity in the DRIFT spectra with wavenumbers and intensities from ab initio quantum mechanical calculations. The presented data of polyacrylic acid suggest that IR data calculated ab initio on relatively short oligomers (quantum-mechanical oligomer approach) may provide valuable information regarding the interpretation of polyelectrolyte infrared spectra. Batch adsorption experiments were performed to sorb PAA onto the δ-Al₂O₃ surface. The results obtained from DRIFT studies were compared with adsorption isotherm experiments in order to relate the level of PAA coverage to the nature of the surface complex. Ab initio molecular orbital calculations on PAA/Al₂O₃ clusters were used to model possible surface complexes. Strong correlation were found between theoretical and observed DRIFT frequencies of the antisymmetric R-COO⁻ vibration. A number of possible configurations of the polyacrylic acid/aluminate surface complex were tested via ab initio calculations. These possible configurations included different di-aluminium octahedral Al³⁺ surface models. Results obtained from adsorption isotherm experiments, DRIFT spectra and ab initio calculations indicate that the carboxylate oxygens bridge an Al³⁺-octahedral dimer [Al₂(OH)₂4(H₂O)2(OH)] in a ligand-exchange inner sphere complex.     

Infrared spectra of the Li+-(H2)n (n=1-3) cation complexes

The Li+-(H2)n n=1-3 complexes are investigated through infrared spectra recorded in the H-H stretch region (3980-4120 cm-1) and through ab initio calculations at the MP2/aug-cc-pVQZ level. The rotationally resolved H-H stretch band of Li+-H2 is centered at 4053.4 cm-1 [a -108 cm-1 shift from the Q1(0) transition of H2]. The spectrum exhibits rotational substructure consistent with the complex possessing a T-shaped equilibrium geometry, with the Li+ ion attached to a slightly perturbed H2 molecule. Around 100 rovibrational transitions belonging to parallel Ka=0-0, 1-1, 2-2, and 3-3 subbands are observed. The Ka=0-0 and 1-1 transitions are fitted by a Watson A-reduced Hamiltonian yielding effective molecular parameters. The vibrationally averaged intermolecular separation in the ground vibrational state is estimated as 2.056 A increasing by 0.004 A when the H2 subunit is vibrationally excited. The spectroscopic data are compared to results from rovibrational calculations using recent three dimensional Li+-H2 potential energy surfaces [Martinazzo et al., J. Chem. Phys. 119, 11241 (2003); Kraemer and Spirko, Chem. Phys. 330, 190 (2006)]. The H-H stretch band of Li+-(H2)2, which is centered at 4055.5 cm-1 also exhibits resolved rovibrational structure. The spectroscopic data along with ab initio calculations support a H2-Li+-H2 geometry, in which the two H2 molecules are disposed on opposite sides of the central Li+ ion. The two equivalent Li+...H2 bonds have approximately the same length as the intermolecular bond in Li+-H2. The Li+-(H2)3 cluster is predicted to possess a trigonal structure in which a central Li+ ion is surrounded by three equivalent H2 molecules. Its infrared spectrum features a broad unresolved band centered at 4060 cm-1.     

The open-shell interaction of He with the B 3Piu(0+) state of Br2: an ab initio study and its comparison with a diatomics-in-molecule perturbation model

The interaction of He with Br2 in electronically excited B 3Piu state is investigated using spin-unrestricted single and double coupled-cluster approach with noniterative perturbative treatment of triple excitations. Internal electrons of the Br atom are described by effective core pseudopotentials. The validity of this approach is analyzed by comparing the lowest 2Sigma+ and 2Pi electronic states of the HeBr molecule with those obtained in all electron calculations [J. Chem. Phys. 115, 10438 (2001)]. In this context, we examine the performance of different basis sets and saturation with bond functions. The comparison of theoretical blue-shifts with the experiment provides confidence about the present ab initio calculations. In addition, He-Br results of ab initio calculations at the same level are used to obtain approximate He-Br2 (3Piu) interactions in the framework of the diatomics-in-molecule first order perturbation theory (IDIM-PT1) [J. Chem. Phys. 104, 9913 (1996)]. Overall, the IDIM-PT1 model results show a good agreement with the ab initio ones, being the main difference the sensitivity to the elongation of the Br-Br bond.     

Inelastic collisions of molecular hydrogen: a comparison of results from quantum and classical mechanics

Full-dimensional quantum and classical calculations have been carried out for inelastic (nonreactive) energy transfer in H2+H2 on the ab initio potential energy surface of Boothroyd et al. [J. Chem. Phys. 116, 666 (2002)]. State-to-state cross sections are determined and compared for transitions from H2(0,j(ab))+H2(1,j(cd)). While there is excellent agreement for transitions involving small Deltaj, for larger Deltaj and for vibrational relaxation, significant differences are observed which exhibit no systematic trends. Reasons for this disagreement are discussed.     

Molecular orientation of terephthalic acid assembly on epitaxial graphene: NEXAFS and XPS study

The adsorption of terephthalic acid molecules [C(6)H(4)(COOH)(2)), TPA] on a single layer of graphene grown epitaxially on Ni(111) has been investigated by means of near-edge X-ray absorption fine structure (NEXAFS) spectroscopy and X-ray photoelectron spectroscopy (XPS) at room temperature. The assignment of the NEXAFS resonances was aided by ab initio calculations for the free TPA molecule. For coverages up to a monolayer the molecular plane of TPA adopts a parallel orientation with regard to the epitaxial graphene (EG) layer. Deprotonation of TPA molecules at one monolayer coverage can be excluded. For TPA multilayers, the molecular plane is tilted on average by approximately 45° with respect to the sample surface.     

Quasi-classical trajectory study of the adiabatic reactions occurring on the two lowest-lying electronic states of the LiH2+ system

Quasi-classical trajectory calculations have been performed on the adiabatically allowed reactions taking place on the two lowest-lying electronic states of the LiH2+ system, using the ab initio potential energy surfaces of Martinazzo et al. (J. Chem. Phys., 2003, 119, 11 241). These reactions comprise: (i) the exoergic H2 and H2+ formation occurring through LiH+ + H and LiH + H+ collisions in the ground and in the first electronically excited state, respectively; (ii) the endoergic (ground state) LiH+ dissociation induced by collisions with H atoms; and (iii) the endoergic (excited state) Li + H2+ --> LiH + H+ reaction. The topic is of relevance for a better understanding of the lithium chemistry in the early universe. Thermal rate constants for the above reactions have been computed in the temperature range 10-5000 K and found in reasonably good agreement with estimates based on the capture model.     

Hierarchical modeling N2 adsorption on the surface of and within a C60 crystal: from quantum mechanics to molecular simulation

The adsorption of N(2) on the surface of, and within, a C(60) face-centered cubic crystal has been studied using a hierarchical approach. First, an ab initio potential between N(2) and C(60) is obtained from a recently developed quantum mechanical hybrid method, and then the adsorption behavior is predicted using Monte Carlo simulation. On the crystal surface, N(2) adsorption isotherm at 77.3 K is of type II. The adsorption simulated with the ab initio potential is slightly greater than that with the empirical Steele potential derived from experimental N(2) adsorption on planar graphite, and both are in fairly good agreement with measured results. With increasing pressure, N(2) molecules are found to sequentially occupy three favorable sites: the octahedral sites, the tetrahedral sites, and the top of C(60) molecules. Finally multiple layers form and wetting occurs as the bulk N(2) saturation pressure is reached. The isosteric heat of adsorption exhibits two maxima and finally approaches the enthalpy of vaporization of bulk N(2). Within the crystal, the N(2) adsorption isotherm at 77.3 K is of type I, and the use of ab initio potential leads to significantly greater adsorption than the Steele potential. N(2) molecules are observed to intercalate only the octahedral sites, and the isosteric heat of adsorption is nearly a constant. As in our previous work of N(2) and O(2) adsorption in the C(168) schwarzite (Jiang et al. J. Phys. Chem. B 2004, 108, 9852), this work demonstrates the importance of an accurate adsorbate-adsorbent interaction potential in the determination of gas adsorption behavior.     

Three-dimensional potential energy surface of the Ar-OH(2Pi i) complex

Pure rotational transitions in the ground state for Ar-OH and Ar-OD [Y. Ohshima et al., J. Chem. Phys. 95, 7001 (1991) and Y. Endo et al., Faraday Discuss. 97, 341 (1994)], those in the excited states of the OH vibration, nu(s)=1 and 2, observed by Fourier-transform microwave spectroscopy in the present study, rotation-vibration transitions observed by infrared-ultraviolet double-resonance spectroscopy [K. M. Beck et al., Chem. Phys. Lett. 162, 203 (1989) and R. T. Bonn et al., J. Chem. Phys. 112, 4942 (2000)], and the P-level structure observed by stimulated emission pumping spectroscopy [M. T. Berry et al., Chem. Phys. Lett. 178, 301 (1991)] have been simultaneously analyzed to determine the potential energy surface of Ar-OH in the ground state. A Schrodinger equation, considering all the freedom of motions for an atom-diatom system in the Jacobi coordinate, R, theta, and r, was numerically solved to obtain energies of the rovibrational energy levels using the discrete variable representation method. A three-dimensional potential energy surface is determined by a least-squares fitting. In the analysis the potential parameters, obtained by ab initio calculations at the RCCSD(T) level of theory with a set of basis functions of aug-cc-pVTZ and midbond functions, are used as initial values. The determined intermolecular potential energy surface and its dependence on the OH monomer bond length are compared with those of an isovalent radical complex, Ar-SH.     

Low-lying isomers and finite temperature behavior of (H2O)6 -

(H2O)(6) (-) appears as a "magic" number water cluster in (H2O)(n) (-) mass spectra. The structure of the (H2O)(6) (-) isomer dominating the experimental population has been established only recently [N. I. Hammer et al., J. Phys. Chem. A 109, 7896 (2005)], and the most noteworthy characteristic of this isomer is the localization of the excess electron in the vicinity of a double-acceptor monomer. In the present work, we use a quantum Drude model to characterize the low-energy isomers and the finite temperature properties of (H2O)(6) (-). Comparison with ab initio calculations shows that the use of a water model employing distributed polarizabilities and distributed repulsive sites is necessary to correctly reproduce the energy ordering of the low-lying isomers. Both the simulations and the ab initio calculations predict that there are several isomers of (H2O)(6) (-) significantly lower in energy than the experimentally observed species, suggesting that the experimental distribution is far from equilibrium.     

The structure and binding energies of the van der Waals complexes of Ar and N2 with phenol and its cation, studied by high level ab initio and density functional theory calculations

We have investigated, using both ab initio and density functional theory methods, the minimum energy structures and corresponding binding energies of the van der Waals complexes between phenol and argon or the nitrogen molecule, and the corresponding complexes involving the phenol cation. Structures were obtained at the MP2 level using a large basis, and the corresponding energies were corrected for basis set superposition error (BSSE), higher order electron correlation effects, and for basis set size. The structures of the global minima were further refined for the effects of BSSE and the corresponding binding energies were evaluated. For each neutral species, we find only a single true minimum, pi bonded for argon and OH bonded for nitrogen. For both cationic species, we find that the OH-bonded complex is preferred over other minima which we have identified as having Ar or N(2) between exogeneous atoms. The ab initio calculations are generally in excellent agreement with experimental binding energies and rotational constants. We find that the B3LYP functional is particularly poor at describing these complexes, while a density functional theory (DFT) method with an empirical correction for dispersive interactions (DFT-D) is very successful, as are some of the new functionals proposed by Zhao and Truhlar [J. Phys. Chem. A 109, 5656 (2005); J. Chem. Theory Comput. 2, 1009 (2006); Phys. Chem. Chem. Phys. 7, 2701 (2005); J. Phys. Chem. A 108, 6908 (2004)]. Both the ab initio and DFT-D methods accurately predict the intermolecular vibrational modes.     

Multilayer adsorption of water at a rutile TiO2)(110) surface: towards a realistic modeling by molecular dynamics

We present a model combining ab initio concepts and molecular dynamics simulations for a more realistic treatment of complex adsorption processes. The energy, distance, and orientation of water molecules adsorbed on stoichiometric and reduced rutile TiO(2)(110) surfaces at 140 K are studied via constant temperature molecular dynamics simulations. From ab initio calculations relaxed atomic geometries for the surface and the most probable adsorption sites were derived. The study comprises (i) large two-dimensional surface supercells, providing a realistically low concentration of surface oxygen defects, and (ii) a water coverage sufficiently large to model the onset of the growth of a bulk phase of water on the surface. By our combined approach the influence of both, the metal oxide surface, below, and the bulk water phase, above, on the water molecules forming the interface between the TiO(2) surface and the water bulk layer is taken into account. The good agreement of calculated adsorption energies with experimental temperature programmed desorption spectra demonstrates the validity of our model.