Infrared spectroscopy of matrix-isolated polycyclic aromatic hydrocarbon cations. 3. The polyacenes anthracene, tetracene, and pentacene

Gaseous, ionized polycyclic aromatic hydrocarbons (PAHs) are thought to be responsible for a very common family of interstellar infrared emission bands. Unfortunately, very little infrared spectroscopic data are available on ionized PAHs. Here we present the near- and mid-infrared spectra of the polyacene cations anthracene, tetracene, and pentacene. We also report the vibrational frequencies and relative intensities of the pentacene anion. The cation bands corresponding to the CC modes are typically about 10-20 times more intense than those of the CH out-of-plane bending vibrations. For the cations the CC stretching and CH in-plane bending modes give rise to bands which are an order of magnitude stronger than for the neutral species, and the CH out-of-plane bends produce bands which are 3-20 times weaker than in the neutral species. This behavior is similar to that found for most other PAH cations. The most intense PAH cation bands fall within the envelopes of the most intense interstellar features. The strongest absorptions in the polyacenes anthracene, tetracene, and pentacene tend to group around 1400 cm-1 (between about 1340 and 1500 cm-1) and near 1180 cm-1, regions of only moderate interstellar emission. These very strong polyacene bands tend to fall in gaps in the spectra of the other PAH cations studied to date suggesting that while PAHs with polyacene structures may contribute to specific regions of the interstellar emission spectra, they are not dominant members of the interstellar PAH family.     

Infrared spectroscopy of matrix-isolated polycyclic aromatic hydrocarbon cations. 4. The tetracyclic PAH isomers chrysene and 1,2-benzanthracene

The mid-infrared spectra of the polycyclic aromatic hydrocarbon (PAH) cations of the tetracyclic isomers chrysene (C18H12+) and 1,2-benzanthracene (C18H12+) are presented. As with previous PAH cations studied to date, the CC stretching and CH in-plane bending mode absorptions are about an order of magnitude stronger than the aromatic CH out-of-plane bending absorptions and nearly 2 orders of magnitude more intense than the corresponding bands in the neutral molecule. The CH bands arising from the out-of-plane bends in the cation are slightly weaker than the corresponding bands in the neutral species. The strongest cation bands of these species fall between 1300 and 1330 cm-1, close to the peak of the most intense interstellar emission feature in HII regions and reflection nebulae. A strong PAH cation band at slightly higher frequency than 1300 cm-1 may be associated with an asymmetric CC stretching vibration involving rings adjacent to the kink in the chain of aromatic rings.     

Infrared spectroscopy of matrix-isolated polycyclic aromatic hydrocarbon cations. 2. The members of the thermodynamically most favorable series through coronene

Gaseous, ionized polycyclic aromatic hydrocarbons (PAHs) are thought to be responsible for a very common family of interstellar infrared emission bands. Here the near- and mid-infrared spectra of the cations of the five most thermodynamically favored PAHs up to coronene:phenanthrene, pyrene, benzo[e]pyrene, benzo[ghi]perylene, and coronene, are presented to test this hypothesis. For those molecules that have been studied previously (pyrene, pyrene-d10, and coronene), band positions and relative intensities are in agreement. In all of these cases we report additional features. Absolute integrated absorbance values are given for the phenanthrene, perdeuteriophenanthrene, pyrene, benzo[ghi]perylene, and coronene cations. With the exception of coronene, the cation bands corresponding to the CC modes are typically 2-5 times more intense than those of the CH out-of-plane bending vibrations. For the cations, the CC stretching and CH in-plane bending modes give rise to bands that are an order of magnitude stronger than those of the neutral species, and the CH out-of-plane bends produce bands that are 5-20 times weaker than those of the neutral species. This behavior is similar to that found in most other PAH cations studied to date. The astronomical implications of these PAH cation spectra are also discussed.     

Closed-shell polycyclic aromatic hydrocarbon cations: a new category of interstellar polycyclic aromatic hydrocarbons

Density functional theory has been employed to calculate the harmonic frequencies and intensities of a range of polycyclic aromatic hydrocarbon (PAH) cations that explore both size and electronic structure effects on the infrared spectroscopic properties of these species. The sample extends the size range of PAH species considered to more than 50 carbon atoms and includes several representatives from each of two heretofore unexplored categories of PAH cations: (1) fully benzenoid PAH cations whose carbon skeleton is composed of an odd number of carbon atoms (C(odd) PAHs); and (2) protonated PAH cations (HPAH+). Unlike the radical electronic structures of the PAH cations that have been the subject of previous theoretical and experimental work, the species in these two classes have a 'closed'-shell electronic configuration. The calculated spectra of circumcoronene, C54H18, in both neutral and (radical) cationic form are also reported and compared with those of the other species. Overall, the C(odd) PAHs spectra are dominated by strong CC stretching modes near 1600 cm(-1) and display spectra that are remarkably insensitive to molecular size. The HPAH+ species evince a more complex spectrum consistent with the added contributions of aliphatic modes and their generally lower symmetry. Finally, for both classes of closed-shell cations, the intensity of the aromatic CH stretching modes is found to increase with molecular size far out of proportion with the number of CH groups, approaching a value more typical of neutral PAHs for the largest species studied.     

Reactions of polycyclic aromatic hydrocarbon radical cations with model biological nucleophiles

The determination of gas-phase reactivity of a series of polycyclic aromatic hydrocarbons (PAHs) with nucleophiles is directed at achieving isomer differentiation through ion-molecule reactions and collisionally activated decomposition spectra. A series of PAH isomers form gas-phase [adduci — H]⁺ ions with the reagent nucleophiles pyridine and N-methylimidazole. Collisionally activated decomposition spectra of the [adduct — H]⁺ ions of the pyridine/PAH systems are dominated by products formed by losses of C₅H₄N, C₅H₅N (presumably neutral pyridine), and C₅H₆N. Collisional activation of PAH/N-methylimidazole [adduct — H]⁺ ions causes analogous losses of C₄H₅N₂, C₄H₆N₂ (presumably neutral N-methylimidazole), and C₄H₇N₂. The relative abundances of the ions that result from these losses are highly isomer specific for N-methylimidazole but less so for pyridine. Furthermore, PAH/N-methylimidazole [adduct — H]⁺ ions undergo a series of metastableion decompositions that also provide highly isomer-specific information. The C₄H₇N₂ (from PAH/N-methylimidazole product ions) and C₅H₆N (from PAH/pyridine product ions) losses tend to increase with the ΔH _f of the PAH radical cation. In addition, it is shown that the fragmentation patterns of these gas-phase PAH/nucleophile adducts are similar to fragmentation patterns of PAH/nucleoside adducts generated in solution, which suggests that the structures of products formed in gas-phase reactions are similar to those produced in solution.     

Electronic absorption spectroscopy of matrix-isolated polycyclic aromatic hydrocarbon cations. II. The phenanthrene cation (C14H10+) and its 1-methyl derivative

The ultraviolet, visible, and near infrared absorption spectra of phenanthrene (C14H10), 1-methylphenanthrene [(CH3)C14H9], and their radical ions [C14H10+; (CH3)C14H9+], formed by vacuum-ultraviolet irradiation, were measured in neon matrices at 4.2 K. The associated vibronic band systems and their spectroscopic assignments are discussed. The oscillator strengths were calculated for the phenanthrene ion and found lower than the theoretical predictions. This study presents the first spectroscopic data for phenanthrene and its methyl derivative trapped in a neon matrix where the perturbation of the isolated species by its environment is minimum; a condition crucial to astrophysical applications.     

Electronic spectra and ionization potentials of a stable class of closed shell polycyclic aromatic hydrocarbon cations

Due to their stability, closed shell polycyclic aromatic hydrocarbon (PAH) cations are possible candidates as carriers for some of the diffuse interstellar bands (DIBs). The electronic absorption spectra and ionization potentials of several closed shell PAH cations are determined in this study. We use density functional theory (DFT) at the BLYP/6-31G* level to determine the ionization potentials and thus confirm the stability of the PAH cations of interest. We use time-dependent density functional theory (TDDFT), again at the BLYP/6-31G* level, to calculate the vertical excitation energies and oscillator strengths of the PAH cations. We observe dominant single absorptions within the DIB spectral region of interest in all of the PAH cation spectra except for the smallest member of the series.     

A Fourier-transform ion-cyclotron-resonance study of the reactions of polycyclic aromatic hydrocarbon cations with molecules of interstellar interest

The reactivity of naphthalene and pyrene radical cations and their derivatives (C₁₀H_n⁺, n=6,7,8,9), C₁₆H_n (n=9,10,11) has been studied with molecules of interstellar interest in an ion cyclotron resonance apparatus. The radical cations C₁₀H₈⁺ and C₁₆H₁₀⁺ are unreactive with H₂,CO,H₂O and NH₃. Adduct formation is the only channel for almost all reactions of C₁₀H₇⁺ with these molecules. The implications of these results for the stability of polycyclic aromatic hydrocarbon (PAH) cations in the interstellar medium are briefly discussed. Exploratory studies of the ion chemistry of a larger PAH, coronene, have also been done.     

Analysis of intermediates from polycyclic aromatic hydrocarbon biodegradation

A major difficulty in assessing bioremediation in hydrocarbon impacted field sites is the determination of the extent and products of contaminant biodegradation. Previously, various analytical techniques, including mass spectrometry and chromatography, have been used to characterize components in mixtures resulting from biodegradation. In this work, the applicability of capillary electrophoresis (CE) to this area of research is demonstrated. CE methods were optimized for analysis of compounds that are known metabolites of polycyclic aromatic hydrocarbon (PAH) biodegradation.     

Synthesis of a three-dimensional spiro-annulated polycyclic aromatic hydrocarbon

We describe the results of our investigation on the preparation, structural characterization, and optical properties of a spiro-annulated polycyclic aromatic hydrocarbon prepared by the cyclodehydrogenation of a hexa{2-(9,9′-spirobifluorenyl)}benzene precursor molecule. Single-crystal X-ray diffraction analysis reveals that the anthracene backbone adopts one of the largest end-to-end twists thus far reported.     

Suppressing aggregation in a large polycyclic aromatic hydrocarbon

With the approach presented herein, a large aromatic pi-system is synthesized, which shows extraordinarily high solubility and an effective suppression of aggregation. This was due to a distortion of the aromatic core by bulky tert-butyl groups and the solubilizing effects of alkyl chains in the corona of the aromatic core. Therefore not only the processing and cleaning of the materials with standard laboratory techniques became possible, but moreover the first structure-rich UV/vis and a resolved (1)H NMR spectra for an aromatic system two times larger than hexa-peri-hexabenzocoronene were recorded. The bulk properties in an extruded fiber as well as on the surface showed a columnar self-assembly including a phase in which a homeotropic alignment on a substrate was observed, which turns the material into an interesting candidate for future applications in electronic devices.     

Electrochemical DNA biosensor for polycyclic aromatic hydrocarbon detection

Four DNA electrochemical biosensors using four types of DNA (calf thymus ssDNA, calf thymus dsDNA, salmon testis ssDNA and salmon testis dsDNA) were constructed using graphite screen printed electrodes. These biosensors were exploited as analytical tool to detect polycyclic aromatic hydrocarbons-DNA interactions using benzo(a)anthracene and phenantrene as model analytes, the guanine oxidation peak variation being the signal revealing the interaction between PAHs and immobilized DNA. The salmon testis ssDNA biosensor resulted as the most promising device and was further evaluated for benzo(a)anthracene, fluorene, indeno(1,2,3-cd)pyrene, anthracene, and phenanthrene in 5–40 ng mL^?1 solutions, and for benzo(a)pyrene (5–50 ng mL^?1). A concentration dependent variation of the DNA guanine oxidation peak was observed for all compounds. The effect of benzo(a)pyrene ultraviolet (UV) activation on the benzo(a)pyrene (BaP)-DNA interaction was evaluated at concentration levels of 20 and 50 ng mL^?1, and a 3.5- and 2.7-fold increases of the guanine oxidation peak was measured respectively. The salmon testis ssDNA biosensor was examined with PAHs contaminated samples of Mytilus galloprovincialis. Upon UV irradiation of three sample extracts exceeding the BaP maximum level, a positive variation of the DNA guanine oxidation was obtained. An average 2.4-fold increase of the guanine oxidation peak was detected demonstrating that the sensor can be used to detect toxic degradation products of PAHs.     

Liquid-liquid-liquid microextraction for the enrichment of polycyclic aromatic hydrocarbon metabolites investigated with fluorescence spectroscopy and capillary electrophoresis

The extraction and pre-concentration of phenol, 2-naphthol, and several hydroxyl polycyclic aromatic hydrocarbon (PAH) metabolites were investigated, using liquid-liquid-liquid microextraction (LLLME). The PAH metabolites are a very important class of compounds, and they have not been investigated previously by LLLME. For several of the hydroxyl PAH metabolites, the enrichment factors were small when using LLLME with an alkaline acceptor phase. Changing the acceptor phase to 1-octanol, which gave a two-phase system, improved the enrichment factors significantly for several of the hydroxyl PAH metabolites. For example, the enrichment factor was improved by a factor of 68.5 for 3-hydroxybenzo[a]pyrene. Enrichment factors were investigated as a function of time and stirring rate. At about 55 min the enrichment factor reached a maximum for the two-phase system and at approximately 75 min for the three-phase microextraction system. However, a 30 min extraction time was used for most of the experiments. Also, fluorescence spectroscopy was used to determine the enrichment factors and the mass distribution of the solute between the phases. Fluorescence spectroscopy was very effective in determining the very small concentrations of the solute in the various phases. In addition, capillary electrophoresis and LLLME were combined to demonstrate the substantial enrichment of 2-naphthol by combining these two approaches.     

Infrared photodissociation spectroscopy of copper carbonyl cations

Copper carbonyl cations of the form Cu(CO)(n)(+) (n = 1-8) are produced in a molecular beam via laser vaporization in a pulsed nozzle source. Mass-selected infrared photodissociation spectroscopy in the carbonyl stretching region is used to study these ions and their argon "tagged" analogues. The geometries and electronic states of these complexes are determined by the number of infrared-active bands, their frequency positions, and their relative intensities compared to the predictions of theory. Cu(CO)(4)(+) has a completed coordination sphere, consistent with its expected 18-electron stability. It also has a tetrahedral structure similar to that of its neutral isoelectronic analog Ni(CO)(4). The carbonyl stretch in Cu(CO)(4)(+) (2198 cm(-1)) is blue-shifted with respect to the free CO vibration (2143 cm(-1)), providing evidence that this is a "non-classical" metal carbonyl.     

Far-infrared spectroscopy of small polycyclic aromatic hydrocarbons

Both experimental and theoretical spectroscopic studies on small gas phase polycyclic aromatic hydrocarbons in the far-infrared spectral region are reported. The experimental set-up based on thermal emission and Fourier transform far infrared analysis led to the detection of relatively broad vibrational bands, unresolved in rotation, representative of each molecule. Detailed theoretical investigations were performed, including both ab initio calculations and spectral simulations. For the majority of the samples, this study provides the first detection of the vibrational modes associated with the skeleton motions.     

Model calculations for reactivities of polycyclic aromatic hydrocarbon metabolites

Structure-resonance theory calculations correlate reactivities and mutagenicities of polycylic aromatic hydrocarbon metabolites.     

Indium-catalyzed construction of polycyclic aromatic hydrocarbon skeletons via dehydration

Polycyclic aromatic compounds can be synthesized from 2-benzylic- or 2-allylbenzaldehydes using a catalytic amount of In(III) or Re(I) complexes. By using this method, polycyclic aza-aromatic compounds can also be prepared efficiently. In these reactions, only water is formed as a side product.     

van der Waals interactions of polycyclic aromatic hydrocarbon dimers

Density functional theory is in principle exact and includes also long-range interactions, such as the van der Waals interactions. These are, however, part of the exchange-correlation energy functional that needs to be approximated, and are absent in the local and semilocal standard implementations. Recently a density functional which includes van der Waals interactions for planar systems has been developed, which we show can be extended to provide a treatment of planar molecules. We use this functional to calculate binding distances and energies for dimers of three of the smallest polycyclic aromatic hydrocarbons (PAHs)--naphthalene, anthracene, and pyrene.