Internal Architecture and Adsorption Sites of Violet Lander Molecules Assembled on Native and KBr‐Passivated InSb(001) Surfaces

The adsorption of individual Violet Lander molecules self‐assembled on the c(8×2) reconstructed InSb(001) surface in its native form and on the surface passivated with one to three monolayers of KBr is investigated by means of low‐temperature scanning tunneling microscopy (STM). Preferred adsorption sites of the molecules are found on flat terraces as well as at atomic step edges. For molecules immobilized on flat terraces, several different conformations are identified from STM images acquired with submolecular resolution and are explained by the rotation of the 3,5‐di‐tert‐butylphenyl groups around σ bonds, which allows adjustment of the molecular geometry to the anisotropic substrate structure. Formation of ordered molecular chains is found at steps running along substrate reconstruction rows, whereas at the steps oriented perpendicularly no intermolecular ordering is recorded. It is also shown that the molecules deposited at two or more monolayers of the epitaxial KBr spacer do not have any stable adsorption sites recorded with STM. Prospects for the manipulation of single molecules by using the STM tip on highly anisotropic substrates are also explored, and demonstrate the feasibility of controlled lateral displacement in all directions.     

Molecular Dissociation on the SiC(0001) 3×3 Surface

In the framework of density functional theory, the adsorption of the halogenated polycyclic aromatic hydrocarbon 2,11‐diiodohexabenzocoronene (HBC‐I₂) on the SiC(0001) 3×3 surface has been investigated. Nondissociative and dissociative molecular adsorption is considered, and simulated scanning tunneling microscopy (STM) images are compared with the corresponding experimental observations. Calculations show that dissociative adsorption is favorable and reveal the crucial importance of the extended flat carbon core on molecule–surface interactions in dissociative adsorption; the iodine atom–surface interaction is of minor importance. Indeed, removing iodine atoms does not significantly affect the STM images of the central part of the molecule. This study shows that the dissociation of large halogenated polycyclic aromatic hydrocarbon molecules can occur on the SiC surface. This opens up interesting perspectives in the chemical reactivity and functionalization of wide band gap semiconductors.     

STM studies of photochemistry and plasmon chemistry on metal surfaces

We review our recent studies of photochemistry and plasmon chemistry of dimethyl disulfide, (CH₃S)₂, molecules adsorbed on metal surfaces using a scanning tunneling microscope (STM). The STM has been used not only for the observation of surface structures at atomic spatial resolution but also for local spectroscopies. The STM combined with optical excitation by light can be employed to investigate chemical reactions of single molecules induced by photons and localized surface plasmons. This technique allows us to gain insights into reaction mechanisms at a single molecule level. The experimental procedures to examine the chemical reactions using the STM are briefly described. The mechanism for the photodissociation reaction of (CH₃S)₂ molecules adsorbed on metal surfaces is discussed based on both the experimental results obtained with the STM and the electronic structures calculated by density functional theory. The dissociation reaction of the (CH₃S)₂ molecule induced by the optically excited plasmon in the STM junction between a Ag tip and metal substrate is also described. The reaction mechanism and pathway of this plasmon-induced chemical reaction are discussed by comparison with those proposed in plasmon chemistry.     

Step‐Mediated Anisotropic Adsorption and Condensation of tert‐Butylamine on Cu(111)

Scanning tunneling microscopy (STM) combined with density functional theory (DFT) calculations were applied in studying the anisotropic adsorption and condensation of tert‐butylamine (t‐BA) molecules in the vicinity of the steps on the Cu(111) surface. The preferential adsorption at the upper step edges and uneven distribution of t‐BA in the vicinity of the steps illustrate the asymmetric electronic structure of the surface steps. Our observation demonstrates that the adsorption and diffusion of a polar molecule would be significantly mediated by steps on metal surfaces due to the molecule–step interaction and the intermolecular interactions.     

Conformation Diversity of a Fused‐Ring Pyrazine Derivative on Au(111) and Highly Ordered Pyrolytic Graphite

Heterocyclic aromatic compounds have attracted considerable attention because of their high carrier mobility that can be exploited in organic field‐effect transistors. This contribution presents a comparative study of the packing structure of 3,6‐didodecyl‐12‐(3,6‐didodecylphenanthro[9,10‐b]phenazin‐13‐yl)phenanthro[9,10‐b]phenazine (DP), an N‐heterocyclic aromatic compound, on Au(111) and highly ordered pyrolytic graphite (HOPG). High‐resolution scanning tunneling microscopy (STM) combined with atomistic simulations provide a picture of the interface of this organic semiconductor on an electrode that can have an impact on the field‐effect transistor (FET) performance. DP molecules adsorb with different conformational isomers (R/S: trans isomers; C: cis isomer) on HOPG and Au(111) substrates. All three isomers are found in the long‐range disordered lamella domains on Au(111). In contrast, only the R/S trans isomers self‐assemble into stable chiral domains on the HOPG surface. The substrate‐dependent adsorption configuration selectivity is supported by theoretical calculations. The van der Waals interaction between the molecules and the substrate dominates the adsorption binding energy of the DP molecules on the solid surface. The results provide molecular evidence of the interface structures of organic semiconductors on electrode surfaces.     

Rastertunnelmikroskopie an chiralen Molekülen: Nanochemie

The imaging and manipulation capabilities of the scanning tunnelling microscope (STM) render possible a novel nanoscale chemistry based on experiments with single molecules. Herein, we address several aspects of a nanoscale stereochemistry using the STM. As an example, we investigate 1‐nitronaphthalene on Au(111). 1‐Nitronaphthalene becomes chiral upon planar adsorption on the metal surface. High‐resolution STM images reflect the asymmetric electronic structure of the molecules and allow for the determination of the absolute configuration of any individual molecule within complex molecular structures. At medium coverage, spontaneous breaking of the chiral symmetry results in the formation of homochiral conglomerates, while at high coverage racemic structures prevail. Finally, the tip of the STM is used to separate “supramolecule‐by‐supramolecule” a racemic mixture of chiral 1‐nitronaphthalene aggregates into the enantiopure compounds.     

2H‐Tetrakis(3,5‐di‐tert‐butyl)phenylporphyrin on a Cu(110) Surface: Room‐Temperature Self‐Metalation and Surface‐Reconstruction‐Facilitated Self‐Assembly

The adsorption behavior of 2H‐tetrakis(3,5‐di‐tert‐butyl)phenylporphyrin (2HTTBPP) on Cu(110) and Cu(110)–(2×1)O surfaces have been investigated by using variable‐temperature scanning tunneling microscopy (STM) under ultrahigh vacuum conditions. On the bare Cu(110) surface, individual 2HTTBPP molecules are observed. These molecules are immobilized on the surface with a particular orientation with respect to the crystallographic directions of the Cu(110) surface and do not form supramolecular aggregates up to full monolayer coverage. In contrast, a chiral supramolecular structure is formed on the Cu(110)–(2×1)O surface, which is stabilized by van der Waals interactions between the tert‐butyl groups of neighboring molecules. These findings are explained by weakened molecule–substrate interactions on the Cu(110)–(2×1)O surface relative to the bare Cu(110) surface. By comparison with the corresponding results of Cu–tetrakis(3,5‐di‐tert‐butyl)phenylporphyrin (CuTTBPP) on Cu(110) and Cu(110)–(2×1)O surfaces, we find that the 2HTTBPP molecules can self‐metalate on both surfaces with copper atoms from the substrate at room temperature (RT). The possible origins of the self‐metalation reaction at RT are discussed. Finally, peculiar irreversible temperature‐dependent switching of the intramolecular conformations of the investigated molecules on the Cu(110) surface was observed and interpreted.     

Ordered arrays of semi-crown ligands on an Au(111) electrode surface: <Emphasis Type="Italic">in situ</Emphasis> STM study

In situ scanning tunneling microscopy (STM) and cyclic voltammetry were employed to investigate the adsorption structures of three semi-crown ligands on an Au(111) surface under the potential control. It is found that all the molecules formed ordered arrays in 0.1 mol/L HClO₄ solution, although their geometric structures are complex and asymmetric. The driving force was supposed to come from the balance between intermolecular and molecule-substrate interactions. High resolution STM images revealed internal molecular structures, orientations and packing arrangements in the ordered adlayers. The results are useful for preparing ordered arrays of transition metal-mediated nanostructures.     

Self‐assembled Monolayers of Alkylphosphonic Acids on Aluminum Oxide Surfaces – A Theoretical Study

Density‐functional based calculations were used to investigate self‐assembled monolayers of different alkylphosphonic acids on corundum α‐Al₂O₃ (0001), bayerite β‐Al(OH)₃ (001) and boehmite γ‐AlOOH (010) surface models. Mono‐, bi‐, and tridentate adsorption modes were considered. In addition, the organization of single adsorbed molecules was compared to the organization at full surface coverage. The height (thickness) of the self‐assembled monolayers is always shorter than the length of the phosphonic acid molecules due to tilting of the alkyl chains. Tilt angles at full surface coverage are very similar to the tilt angle of a single adsorbed molecule, which indicates that the density of the self‐assembled monolayers is limited by the density of adsorption sites. The lateral interactions between alkyl chains are evidenced by small torsions of the adsorbed molecules, which may serve to minimize the repulsion forces between interchain hydrogen atoms. Similar tilt angles were obtained for mono‐, bi‐, and tridentate adsorptions. Hence, the coordination mode cannot be characterized by the molecule tilting.     

Adsorption and decomposition of HMX and CL‐20 on Al(111) surface by DFT investigation

The adsorption and decomposition of HMX and CL‐20 molecules on the Al(111) surface were investigated by the generalized gradient approximation of density functional theory. The calculations employed a supercell (6 × 6 × 3) slab model and three‐dimensional periodic boundary conditions. The strong attractive forces between HMX (or CL‐20) molecule and Al atoms induce the breaking of N‐O and N‐N bonds in nitro group. Subsequently, the dissociated oxygen atoms, NO₂ groups, and radical fragments of HMX or CL‐20 oxidize the Al surface. The largest adsorption energy is ?1792.7 kJ/mol in B1, where CL‐20 decomposes into four O atoms and a CL‐20 fragment. With the number of the radical species in adsorption configurations increases, the corresponding adsorption energy increases greatly. We also investigated the decomposition mechanism of HMX and CL‐20 molecules on the Al(111) surface. The activation energies (E _a) for the dissociations A2, A3, B1, and B6 are 31.2, 47.9, 75.5, and 75.9 kJ/mol, respectively. Although CL‐20 is more sensitive than HMX in its gaseous state, the E _a of CL‐20 is higher than that of HMX when they adsorb and decompose on the Al(111) surface, which indicates that the HMX is even easier to decompose on Al(111) surface as compared with CL‐20. Copyright © 2016 John Wiley & Sons, Ltd.     

Surface modification of titanium by using plasma‐induced graft‐polymerization

Plasma‐induced graft‐polymerization (PIGP) method was utilized in this study to improve corrosion behavior and biocompatibility of titanium (Ti) surface. Bioactive molecule polyacrylamide (PAM) was immobilized onto Ti surface by introducing silanederivatized spacer arms as an intermediary for the covalent linkage. Ti was firstly activated by O₂ plasma, and oxygen‐containing groups were introduced on its surface consequently. The intermediary mercapto silane spacer molecules were then covalently linked to the oxidated surface, followed by the covalent binding of PAM and the sulfhydryl‐terminal groups via PIGP. Surface analyses following modification process included water contact angles (CA), SEM, attenuated total reflection‐Fourier transform infrared spectroscopy (ATR‐FTIR), XPS and atomic force microscope (AFM). The results revealed the effectiveness of this method on immobilizing PAM to Ti surface, and the hydrophilicity of modified surface improved remarkably. In addition, potentiodynamic polarization and cellular proliferation tests were implemented to validate the enhanced corrosion‐resistance and biocompatibility of modified Ti surface, respectively. Copyright © 2011 John Wiley & Sons, Ltd.     

Diffusion of Formaldehyde on Rutile TiO2(110) Assisted by Surface Hydroxyl Groups

As the photo-dissociation product of methanol on the TiO₂(110) surface,the diffusion and desorption processes of formaldehyde (HCHO) were investigated by using scanning tunneling microscope (STM) and density functional theory (DFT).The molecular-level images revealed the HCHO molecules could diffuse and desorb on the surface at 80 K under UV laser irradiation.The diffusion was found to be mediated by hydrogen adatoms nearby,which were produced from photodissociation of methanol.Diffusion of HCHO was significantly decreased when there was only one H adatom near the HCHO molecule.Furthermore,single HCHO molecule adsorbed on the bare TiO₂(110) surface was quite stable,little photo-desorption was observed during laser irradiation.The mechanism of hydroxyl groups assisted diffusion of formaldehyde was also investigated using theoretical calculations.     

Chemistry of O‐ and H‐Containing Species on the (001) Surface of Anatase TiO2: A DFT Study

The chemistry of oxygen, hydrogen, water, and other species containing both oxygen and hydrogen atoms on the anatase TiO₂ (001) surface is investigated by DFT. The adsorption energy of atoms and radicals depends appreciably on the position and mode of adsorption, and on the coverage. Molecular hydrogen and oxygen interact weakly with the clean surface. However, H₂O dissociates spontaneously to give two nonidentical hydroxyl groups, and this provides a model for hydroxylation of TiO₂ surfaces by water. The mobility of the hydroxyl groups created by water splitting is initially impeded by a diffusion barrier close to 1 eV. The O₂ adsorption energy increases significantly in the presence of H atoms. Hydroperoxy (OOH) formation is feasible if at least two H atoms are present in the direct vicinity of O₂. In the adsorbed OOH, the O? O bond is considerably lengthened and thus weakened.     

疏水相互作用引起Gemini表面活性剂柔性联接链的弯曲

为了理解gemini表面活性剂柔性烷基联接链在自组织过程中的特殊作用,我们合成了三种gemini表面活性剂烷基-a,w-二（二-十二烷基甲基溴化铵）（记为2C12-s-2C12×2Br (s=3, 6, 8)）。2C12-s-2C12×2Br在水表面构成铺展膜后,由于每个分子带有4根烷烃链,它们形成了稠密的烷烃尾链层。增强的烷烃尾链与联接链间的疏水相互作用促使联接链弯曲朝向空气一端,可发生弯曲的联接链长度要小于吸附在水溶液表面上的gemini表面活性剂C12-s-C12×2Br,后者每个分子只有2根烷烃链。由此可见,增强的烷烃尾链与联接链间的疏水相互作用可以有效地促进联接链的弯曲。     

On‐Surface Metalation and 2D Self‐Assembly of Pyrphyrin Molecules Into Metal‐Coordinated Networks on Cu(111)

The metalation of the tetradentate molecule pyrphyrin by copper substrate atoms on a Cu(111) surface is studied. Pyrphyrin, in contrast to porphyrin, consists of four fused pyridine groups instead of pyrrol groups. Using thermal desorption spectroscopy (TDS ) and N 1s X‐ray photoelectron spectroscopy (XPS ), we show that metalation of the monolayer of pyrphyrin with Cu atoms from the Cu(111) surface occurs at 377 K. The formation of an extended two‐dimensional (2D) network is observed with scanning tunneling microscopy (STM ). A honeycomb‐like lattice of metalated pyrphyrin molecules is formed by intermolecular connection via the two cyano groups at the periphery of pyrphyrin as well as Cu adatoms. Dehydrogenation at the periphery of the molecule is observed during annealing at 520 K. The surface‐adsorbed metal‐pyrphyrin has the potential to serve as a molecular catalyst.     

Importance of the Anchor Group Position (Para versus Meta) in Tetraphenylmethane Tripods: Synthesis and Self‐Assembly Features

The efficient synthesis of tripodal platforms based on tetraphenylmethane with three acetyl‐protected thiol groups in either meta or para positions relative to the central sp³ carbon for deposition on Au (111) surfaces is reported. These platforms are intended to provide a vertical arrangement of the substituent in position 4 of the perpendicular phenyl ring and an electronic coupling to the gold substrate. The self‐assembly features of both derivatives are analyzed on Au (111) surfaces by low‐temperature ultra‐high‐vacuum STM, high‐resolution X‐ray photoelectron spectroscopy, near‐edge X‐ray absorption fine structure spectroscopy, and reductive voltammetric desorption studies. These experiments indicated that the meta derivative forms a well‐ordered monolayer, with most of the anchoring groups bound to the surface, whereas the para derivative forms a multilayer film with physically adsorbed adlayers on the chemisorbed para monolayer. Single‐molecule conductance values for both tripodal platforms are obtained through an STM break junction experiment.     

Hourglass‐Shaped Dendrimers on Surfaces: A Comparison of Different Scanning‐Tunneling‐Microscopy Approaches

Large molecules adsorbed on surfaces can be analyzed by scanning tunneling microscopy (STM) under various environmental conditions: on a dry surface in air or vacuum, and at the solid‐liquid interface. However, can measurements under dissimilar conditions be compared, e. g., when sample A was studied at the solid‐liquid interface and sample B in a dry environment? Only rarely can the same substance be examined with more than one approach, since completely different set‐up and preparations are necessary. Furthermore, few substances are suitable for several methods of sample preparation and characterization. We have chosen a large, flexible, nonplanar molecule, namely an alkoxy‐substituted second‐generation dendritic compound with a chiral core unit, which is peculiar for its ‘hourglass' conformation. The assembly properties have been explored by STM both in solution‐cast self‐organized monolayers (SOMs) and multilayer films, as well as at the solid‐liquid interface. The complexity and limits of the three approaches applied to our hourglass‐shaped dendritic compound are discussed. Depending on the approach and environmental conditions, several quality levels of image resolution could be achieved; measurements carried out at low temperatures led to highest resolution on the aromatic parts of the molecule. A comparison of equally sized images obtained under these varying conditions reveals not only different packing arrangements, but also spots of unlike shape. Therefore, when the approach, preparation, and/or environmental conditions are not the same, STM measurements of different compounds have to be compared with greatest care.     

Adsorption of atomic hydrogen on ZnO(1010): STM study

The adsorption of atomic hydrogen on a single crystal ZnO(1010) surface has been studied by scanning tunneling microscopy (STM) under ultrahigh vacuum conditions at room temperature and at elevated temperatures. High resolution STM images indicate that a well-ordered (1x1) H adlayer is formed on the ZnO(1010) surface. The STM data strongly indicate that the hydrogen adsorbs on top of the oxygen atoms forming hydroxyl species. Scanning tunneling spectroscopy (STS) studies reveal a H atom induced metallization at room temperature. In contrast to the clean surface for the hydrogen-covered surface distinct defects structures consisting of missing O and Zn atoms could be identified.     

An ONIOM and DFT study of water and ammonia adsorption on anatase TiO2 (001) cluster

Density functional theory (DFT) calculations at ONIOM DFT B3LYP/ 6‐31G**‐MD/UFF level are employed to study molecular and dissociative water and ammonia adsorption on anatase TiO₂ (001) surface represented by partially relaxed Ti₂₀O₃₅ ONIOM cluster. DFT calculations indicate that water molecule is dissociated on anatase TiO₂ (001) surface by a nonactivated process with an exothermic relative energy difference of 58.12 kcal/mol. Dissociation of ammonia molecule on the same surface is energetically more favorable than molecular adsorption of ammonia (?37.17 kcal/mol vs. ?23.28 kcal/mol). The vibration frequency values also are computed for the optimized geometries of adsorbed water and ammonia molecules on anatase TiO₂ (001) surface. The computed adsorption energy and vibration frequency values are comparable with the values reported in the literature. Finally, several thermodynamical properties (ΔH°, ΔS°, and ΔG°) are calculated for temperatures corresponding to the experimental studies. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Self‐Assembly of a Mononuclear [FeIII(L)(EtOH)2] Complex Bearing an n‐Dodecyl Chain on Solid Highly Oriented Pyrolytic Graphite Surfaces

The synthesis and structures of the N‐[(2‐hydroxy‐3‐methyl‐5‐dodecylphenyl)methyl]‐N‐(carboxymethyl)glycine disodium salt (H L ) ligand and its neutral mononuclear complex [Fe^III( L )(EtOH)₂] ( 1 ) are reported. Structural and electronic properties of 1 were investigated by using scanning tunneling microscopy (STM) and current imaging tunneling spectroscopy (CITS) techniques. These studies reveal that molecules of 1 form well‐ordered self‐assemblies when deposited on a highly oriented pyrolytic graphite (HOPG) surface. At low concentrations, single or double chains (i.e., nanowires) of the complex were observed, whereas at high concentration the complex forms crystals and densely packed one‐dimensional structures. In STM topographies, the dimensions of assemblies of 1 found on the surface are consistent with dimensions obtained from X‐ray crystallography, which indicates the strong similarities between the crystal form and surface assembled states. Double chains are attributed to hydrogen‐bonding interactions and the molecules align preferentially along graphite defects. In the CITS image of complex 1 a strong tunneling current contrast at the positions of the metal ions was observed. These data were interpreted and reveal that the bonds coordinating the metal ions are weaker than those of the surrounding ligands; therefore the energy levels next to the Fermi energy of the molecule should be dominated by metal‐ion orbitals.