Orbital Effect‐Induced Anomalous Anion–π Interactions between Electron‐Rich Aromatic Hydrocarbons and Fluoride

Anion–π interactions generally exist between an anion and an electron‐deficient π‐ring because of the electron‐accepting character of the ring. In this paper, we report orbital effect‐induced anomalous binding between electron‐rich π systems and F^? through anion–π interactions calculated at the MP2/6‐31+G(d,p) and ωB97X‐D/6‐31+G(d,p) levels of theory. We find that anion–π interactions between F^? and electron‐rich π rings increase markedly with increasing number of π electrons and size of the π rings. This is contrary to intuition because anion–π interactions would be expected to gradually decrease because of gradually increasing Coulombic repulsion between the negative charge of the anions and gradually increasing number of π electrons of the aromatic surfaces. Energy decomposition analysis showed that the key to this anomalous effect is the more effective delocalization of negative charge to the unoccupied π* orbitals of larger π rings, which is termed an “orbital effect”.     

On the Importance of Anion–π Interactions in the Mechanism of Sulfide:Quinone Oxidoreductase

Sulfide:quinone oxidoreductase (SQR) is a flavin‐dependent enzyme that plays a physiological role in two important processes. First, it is responsible for sulfide detoxification by oxidizing sulfide ions (S^2? and HS^?) to elementary sulfur and the electrons are first transferred to flavin adenine dinucleotide (FAD), which in turn passes them to the quinone pool in the membrane. Second, in sulfidotrophic bacteria, SQRs play a key role in the sulfide‐dependent respiration and anaerobic photosynthesis, deriving energy for their growth from reduced sulfur. Two mechanisms of action for SQR have been proposed: first, nucleophilic attack of a Cys residue on the C4 of FAD, and second, an alternate anionic radical mechanism by direct electron transfer from Cys to the isoalloxazine ring of FAD. Both mechanisms involve a common anionic intermediate that it is stabilized by a relevant anion–π interaction and its previous formation (from HS^? and Cys‐S‐S‐Cys) is also facilitated by reducing the transition‐state barrier, owing to an interaction that involves the π system of FAD. By analyzing the X‐ray structures of SQRs available in the Protein Data Bank (PDB) and using DFT calculations, we demonstrate the relevance of the anion–π interaction in the enzymatic mechanism.     

A High‐Barrier Molecular Balance for Studying Face‐to‐Face Arene–Arene Interactions in the Solid State and in Solution

An atropisomeric molecular balance was developed to study face‐to‐face arene–arene interactions. The balance has a large central 1,4,5,8‐naphthalene diimide surface that forms intramolecular arene–arene interactions with two pendent arms. The balance adopts distinct syn and anti isomers with varying numbers of intramolecular interactions. Thus, the strength of the arene–arene interaction could be quantitatively measured by NMR spectroscopy from the anti/syn ratios. The size of the arene arms was easily varied, which allowed examination of the relationship between arene size and strength of the interaction. A nonlinear size dependence was observed in solution with larger arene arms having a disproportionately stronger arene–arene interaction. The intramolecular arene–arene interactions were also characterized in the solid state by X‐ray crystallography. These studies were facilitated by the kinetic stability of the syn and anti isomers at room temperature due to the high isomerization barrier (ΔG=27.0 kcal mol^?1). Thus, the anti isomer could be selectively isolated and crystallized in its folded conformation. The X‐ray structures confirmed that the anti isomers formed two strong intramolecular arene–arene interactions with face‐to‐face geometries. The solid‐state structure analysis also reveals that the rigid framework may contribute to the observed nonlinear size trend. The acetate linker is slightly too long, which selectively destabilizes the balances with smaller arene arms. The larger arene arms are able to compensate for the longer linker and form effective intramolecular arene–arene interactions.     

Preorganized Anion Traps for Exploiting Anion–π Interactions: An Experimental and Computational Study

1,3‐Bis(pentafluorophenyl‐imino)isoindoline (A^F) and 3,6‐di‐tert‐butyl‐1,8‐bis(pentafluorophenyl)‐9H‐carbazole (B^F) have been designed as preorganized anion receptors that exploit anion–π interactions, and their ability to bind chloride and bromide in various solvents has been evaluated. Both receptors A^F and B^F are neutral but provide a central NH hydrogen bond that directs the halide anion into a preorganized clamp of the two electron‐deficient appended arenes. Crystal structures of host–guest complexes of A^F with DMSO, Cl^?, or Br^? (A^F:DMSO, A^F:Cl^?, and ${{\rm A}{{{\rm F}\hfill \atop 2\hfill}}}$ :Br^?) reveal that in all cases the guest is located in the cleft between the perfluorinated flaps, but NMR spectroscopy shows a more complex situation in solution because of E,Z/Z,Z isomerism of the host. In the case of the more rigid receptor B^F, Job plots evidence 1:1 complex formation with Cl^? and Br^?, and association constants up to 960 M ^?1 have been determined depending on the solvent. Crystal structures of B^F and B^F:DMSO visualize the distinct preorganization of the host for anion–π interactions. The reference compounds 1,3‐bis(2‐pyrimidylimino)isoindoline (A^N) and 3,6‐di‐tert‐butyl‐1,8‐diphenyl‐9H‐carbazole (B^H), which lack the perfluorinated flaps, do not show any indication of anion binding under the same conditions. A detailed computational analysis of the receptors A^F and B^F and their host–guest complexes with Cl^? or Br^? was carried out to quantify the interactions in play. Local correlation methods were applied, allowing for a decomposition of the ring–anion interactions. The latter were found to contribute significantly to the stabilization of these complexes (about half of the total energy). Compounds A^F and B^F represent rare examples of neutral receptors that are well preorganized for exploiting anion–π interactions, and rare examples of receptors for which the individual contributions to the binding energy have been quantified.     

Intermolecular Interactions in Weak Donor–Acceptor Complexes from Symmetry‐Adapted Perturbation and Coupled‐Cluster Theory: Tetracyanoethylene–Benzene and Tetracyanoethylene–p‐Xylene

The interactions in the complexes of tetracyanothylene (TCNE) with benzene and p‐xylene, often classified as weak electron donor–acceptor (EDA) complexes, are investigated by a range of quantum chemical methods including intermolecular perturbation theory at the DFT‐SAPT (symmetry‐adapted perturbation theory combined with density functional theory) level and explicitly correlated coupled‐cluster theory at the CCSD(T)‐F12 level. The DFT‐SAPT interaction energies for TCNE–benzene and TCNE–p‐xylene are estimated to be ?35.7 and ?44.9 kJ mol^?1, respectively, at the complete basis set limit. The best estimates for the CCSD(T) interaction energy are ?37.5 and ?46.0 kJ mol^?1, respectively. It is shown that the second‐order dispersion term provides the most important attractive contribution to the interaction energy, followed by the first‐order electrostatic term. The sum of second‐ and higher‐order induction and exchange–induction energies is found to provide nearly 40 % of the total interaction energy. After addition of vibrational, rigid‐rotor, and translational contributions, the computed internal energy changes on complex formation approach results from gas‐phase spectrophotometry at elevated temperatures within experimental uncertainties, while the corresponding entropy changes differ substantially.     

Synthesis,Structure, and Anion Binding Properties of Electron‐Deficient Tetrahomocorona[4]arenes: Shape Selectivity in Anion–π Interactions

Tetrahomocorona[2]arene[2]tetrazines were constructed by means of a fragment coupling strategy based on nucleophilic aromatic substitution reaction starting from 3,6‐dichlorotetrazine and o‐, m‐, and p‐bis(hydroxymethyl)benzenes. The unprecedented macrocycles gave rectangular box‐like cavities with tunable cavity sizes and deficient electronic properties depending on the substitution pattern of phenylene. Due to anion–π interactions, they formed complexes selectively with azide and thiocyanate owing to complementary shapes between host and guest.     

Binding Motifs in the Naked Complexes of Target Amino Acids with an Excerpt of Antitumor Active Biomolecule: An Ion Vibrational Spectroscopy Assay

The structures of proton-bound complexes of 5,7-dimethoxy-4H-chromen-4-one ( 1 ) and basic amino acids (AAs), namely, histidine (His) and lysine (Lys), have been examined by means of mass spectrometry coupled with IR ion spectroscopy and quantum chemical calculations. This selection of systems is based on the fact that 1 represents a portion of glabrescione B, a natural small molecule of promising antitumor activity, while His and Lys are protein residues lining the cavity of the alleged receptor binding site. These species are thus a model of the bioactive adduct, although clearly the isolated state of the present study bears little resemblance to the complex biological environment. A common feature of [ 1 +AA+H]⁺ complexes is the presence of a protonated AA bound to neutral 1 , in spite of the fact that the gas-phase basicity of 1 is comparable to those of Lys and His. The carbonyl group of 1 acts as a powerful hydrogen-bond acceptor. Within [ 1 +AA+H]⁺ the side-chain substituents (imidazole group for His and terminal amino group for Lys) present comparable basic properties to those of the α-amino group, taking part to a cooperative hydrogen-bond network. Structural assignment, relying on the comparative analysis of the infrared multiple photon dissociation (IRMPD) spectrum and calculated IR spectra for the candidate geometries, derives from an examination over two frequency ranges: 900–1800 and 2900–3700 cm⁻¹. Information gained from the latter one proved especially valuable, for example, pointing to the contribution of species characterized by an unperturbed carboxylic OH or imidazole NH stretching mode.     

Deciphering Noncovalent Interactions Accompanying 7,7,8,8‐Tetracyanoquinodimethane Encapsulation within Biphene[n]arenes: Nucleus‐Independent Chemical Shifts Approach

Binding of novel biphene[n]arene hosts to antiaromatic 7,7,8,8‐tetracyanoquinodimethane (TCNQ) are investigated by DFT. Biphene[4]arene favors the inclusion complex through noncovalent interactions, such as hydrogen bonding, π–π stacking, C?H???π, and C?H???H?C dihydrogen bonding. Donor–acceptor complexation renders aromatic character to the guest through charge transfer. The formation of TCNQ anionic radicals through supramolecular π stacking significantly influences its chemical and photophysical behavior. Electron density reorganization consequent to encapsulation of TCNQ reflects in the shift of characteristic vibrations in the IR spectra. The accompanying aromaticities arising from the induced ring currents are analyzed by employing nucleus‐independent chemical shifts based profiles.     

Univalent Gallium Complexes of Simple and ansa‐Arene Ligands: Effects on the Polymerization of Isobutylene

Using [Ga(C₆H₅F)₂]⁺[Al(OR^F)₄]^?( 1 ) (R^F=C(CF₃)₃) as starting material, we isolated bis‐ and tris‐η⁶‐coordinated gallium(I) arene complex salts of p‐xylene (1,4‐Me₂C₆H₄), hexamethylbenzene (C₆Me₆), diphenylethane (PhC₂H₄Ph), and m‐terphenyl (1,3‐Ph₂C₆H₄): [Ga(1,4‐Me₂C₆H₄)_2.5]⁺ ( 2⁺ ), [Ga(C₆Me₆)₂]⁺ ( 3⁺ ), [Ga(PhC₂H₄Ph)]⁺ ( 4⁺ ) and [(C₆H₅F)Ga(μ‐1,3‐Ph₂C₆H₄)₂Ga(C₆H₅F)]²⁺ ( 5²⁺ ). 4⁺ is the first structurally characterized ansa‐like bent sandwich chelate of univalent gallium and 5²⁺ the first binuclear gallium(I) complex without a Ga?Ga bond. Beyond confirming the structural findings by multinuclear NMR spectroscopic investigations and density functional calculations (RI‐BP86/SV(P) level), [Ga(PhC₂H₄Ph)]⁺[Al(OR^F)₄]^?( 4 ) and [(C₆H₅F)Ga(μ‐1,3‐Ph₂C₆H₄)₂Ga(C₆H₅F)]²⁺{[Al(OR^F)₄] ^?}₂ ( 5 ), featuring ansa‐arene ligands, were tested as catalysts for the synthesis of highly reactive polyisobutylene (HR‐PIB). In comparison to the recently published 1 and the [Ga(1,3,5‐Me₃C₆H₃)₂]⁺[Al(OR^F)₄]^? salt ( 6 ) (1,3,5‐Me₃C₆H₃=mesitylene), 4 and 5 gave slightly reduced reactivities. This allowed for favorably increased polymerization temperatures of up to +15 °C, while yielding HR‐PIB with high contents of terminal olefinic double bonds (α‐contents=84–93 %), low molecular weights (M_n=1000–3000 g mol^?1) and good monomer conversions (up to 83 % in two hours). While the chelate complexes delivered more favorable results than 1 and 6 , the reaction kinetics resembled and thus concurred with the recently proposed coordinative polymerization mechanism.     

Host–Guest Chemistry: Oxoanion Recognition Based on Combined Charge‐Assisted C−H or Halogen‐Bonding Interactions and Anion⋅⋅⋅Anion Interactions Mediated by Hydrogen Bonds

Several bis‐triazolium‐based receptors have been synthesized and their anion‐recognition capabilities have been studied. The central chiral 1,1′‐bi‐2‐naphthol (BINOL) core features either two aryl or ferrocenyl end‐capped side arms with central halogen‐ or hydrogen‐bonding triazolium receptors. NMR spectroscopic data indicate the simultaneous occurrence of several charge‐assisted aliphatic and heteroaromatic C?H noncovalent interactions and combinations of C?H hydrogen and halogen bonding. The receptors are able to selectively interact with HP₂O₇^3?, H₂PO₄^?, and SO₄^2? anions, and the value of the association constant follows the sequence: HP₂O₇^3?>SO₄^2?>H₂PO₄^?. The ferrocenyl end‐capped 7²⁺?2 BF₄ ^? receptor allows recognition and differentiation of H₂PO₄^? and HP₂O₇^3? anions by using different channels: H₂PO₄^? is selectively detected through absorption and emission methods and HP₂O₇^3? by using electrochemical techniques. Significant structural results are the observation of an anion???anion interaction in the solid state (2:2 complex, 6²⁺? [ H₂P₂O₇ ] ^2? ), and a short C?I???O contact is observed in the structure of the complex [ 8 ²⁺][SO₄]_0.5[BF₄].     

Biradicaloid Character of Thiophene‐Based Heterophenoquinones: The Role of Electron–Phonon Coupling

The quinoidal versus biradicaloid character of the ground state of a series of thiophene‐based heterophenoquinones is investigated with quantum‐chemical calculations. The role of the ground‐state electronic character on molecular structure and vibrational properties is emphasized. The vibrational activities are experimentally determined and their analysis is performed by taking advantage of the definition of a collective vibrational coordinate (the

     

Competition Between π–π and CH/π Interactions: A Comparison of the Structural and Electronic Properties of Alkoxy‐Substituted 1,8‐Bis((propyloxyphenyl)ethynyl)naphthalenes

The structural and electronic consequences of π–π and C?H/π interactions in two alkoxy‐substituted 1,8‐bis‐ ((propyloxyphenyl)ethynyl)naphthalenes are explored by using X‐ray crystallography and electronic structure computations. The crystal structure of analogue 4 , bearing an alkoxy side chain in the 4‐position of each of the phenyl rings, adopts a π‐stacked geometry, whereas analogue 8 , bearing alkoxy groups at both the 2‐ and the 5‐positions of each ring, has a geometry in which the rings are splayed away from a π‐stacked arrangement. Symmetry‐adapted perturbation theory analysis was performed on the two analogues to evaluate the interactions between the phenylethynyl arms in each molecule in terms of electrostatic, steric, polarization, and London dispersion components. The computations support the expectation that the π‐stacked geometry of the alkoxyphenyl units in 4 is simply a consequence of maximizing π–π interactions. However, the splayed geometry of 8 results from a more subtle competition between different noncovalent interactions: this geometry provides a favorable anti‐alignment of C?O bond dipoles, and two C?H/π interactions in which hydrogen atoms of the alkyl side chains interact favorably with the π electrons of the other phenyl ring. These favorable interactions overcome competing π–π interactions to give rise to a geometry in which the phenylethynyl substituents are in an offset, unstacked arrangement.     

Correlation of Molecular Assembly and Interactions in Crystals and Langmuir–Blodgett Films of N‐(2,4‐dinitrophenyl)‐n‐octadecylamine

Correlation of molecular organization in crystals and in ultrathin films is of fundamental interest in the design of molecular materials based on thin films. We have chosen as a test case, N‐(2,4‐dinitrophenyl)‐n‐octadecylamine (DNPOA), a potential candidate for the fabrication of Langmuir–Blodgett (LB) films for quadratic nonlinear optical applications. Like several other 4‐nitroaniline derivatives, DNPOA does not form stable monolayers at the air–water interface. This has precluded investigations of their organization in LB films. We have stabilized composite Langmuir films of DNPOA with the phospholipid molecule DSPC and fabricated their LB films. Successful growth of single crystals of DNPOA allowed structure determination and detailed analysis of molecular associations in the solid state. Electronic absorption spectra of DNPOA in solution, in the solid state and in the LB film are investigated. Modeling of the various spectral signatures by semiempirical computations on molecular clusters extracted from the crystal lattice provides insight into the correlation between the molecular organization in crystals and in LB films.     

Long‐Range Effects in Anion–π Interactions: Their Crucial Role in the Inhibition Mechanism of Mycobacterium Tuberculosis Malate Synthase

The glyoxylate shunt is an anaplerotic bypass of the traditional Krebs cycle. It plays a prominent role in Mycobacterium tuberculosis virulence, so it can be exploited for the development of antitubercular therapeutics. The shunt involves two enzymes: isocitrate lyase (ICL) and malate synthase (GlcB). The shunt bypasses two steps of the tricarboxylic acid cycle, allowing the incorporation of carbon, and thus, refilling oxaloacetate under carbon‐limiting conditions. The targeting of ICL is complicated; however, GlcB, which accommodates the pantothenate tail of acetyl‐CoA in the active site, is easier to target. A catalytic Mg²⁺ unit is located at the bottom of the cavity, and plays a very important role. Recently, the development of effective antituberculosis drugs based on phenyldiketo acids (PDKAs) has been reported. Interestingly, all the crystal structures of GlcB–inhibitor complexes exhibit close contact between the carboxylate of Asp633 and the face of the aromatic ring of the inhibitor. Remarkably, the replacement of the phenyl ring in PDKA by aliphatic moieties yields inactive inhibitors, suggesting that the aromatic moiety is crucial for inhibition. However, the aromatic ring of PDKA is not electron‐deficient, and consequently, the anion–π interaction is expected to be very weak (dominated only by polarization effects). Herein, through a combination analysis of the recent X‐ray structures of GlcB–PDKA complexes retrieved from the protein data bank (PDB) and computational ab initio studies (RI‐MP2/def2‐TZVP level of theory), we demonstrate the prominent role of the Mg²⁺ ion in the active site, which promotes long‐range enhancement of the anion–π interaction.     

Crystallographic Evidence for Direct Metal–Metal Bonding in a Stable Open‐Shell La2@Ih‐C80 Derivative

Endohedral metallofullerenes (EMFs) have novel structures and properties that are closely associated with the internal metallic species. Benzyl radical additions have been previously shown to form closed‐shell adducts by attaching an odd number of addends to open‐shell EMFs (such as Sc₃C₂@I_h‐C₈₀) whereas an even number of groups are added to closed‐shell EMFs (for example Sc₃N@I_h‐C₈₀). Herein we report that benzyl radical addition to the closed‐shell La₂@I_h‐C₈₀ forms a stable, open‐shell monoadduct instead of the anticipated closed‐shell bisadduct. Single‐crystal X‐ray diffraction results show the formation of a stable radical species. In this species, the La?La distance is comparable to the theoretical value of a La?La covalent bond and is shorter than reported values for other La₂@I_h‐C₈₀ derivatives, providing unambiguous evidence for the formation of direct La?La bond.