Peptide recognition: encapsulation and alpha-helical folding of a nine-residue peptide within a hydrophobic dimeric capsule of a bowl-shaped host

A dimeric capsule of coordination bowl 1 encapsulated a nine-residue peptide (Trp-Ala-Glu-Ala-Ala-Ala-Glu-Ala-Trp; 2) within the large hydrophobic cavity in water, and stabilized the alpha-helical conformation of bound 2. An NMR titration experiment revealed that monomeric bowl 1 recognized two Trp residues at the both terminals of 2 through 1/2 = 1:1 to 2:1 complexation. The 1:1 and 2:1 species exist in equilibrium even in the presence of excess 1. It was found that the formation of the 2:1 complex, in which two bowls of 1 wrapped the whole of 2, became dominant by the addition of NaNO3 due to the fact that the enhanced ion strength increased the hydrophobic interaction between Trp residues and the cavity of 1. The alpha-helical conformation of 2 within the dimeric capsule of 1 was elucidated from detailed NOESY analysis.     

A Tunable Cyclic Container: Guest‐Induced Conformational Switching,Efficient Guest Exchange,and Selective Isolation of C70 from a Fullerene Mixture

An adaptable cyclic porphyrin dimer with highly flexible linkers has been used as an artificial molecular container that can efficiently encapsulate various aromatic guests (TCNQ/C₆₀/C₇₀) through strong π–π interactions by adjusting its cavity size and conformation. The planar aromatic guest (TCNQ) can be easily and selectively exchanged with larger aromatic guests (C₆₀/C₇₀). During the guest‐exchange process, the two porphyrin rings switch their relative orientation according to the size and shape of the guests. This behavior of the cyclic container has been thoroughly investigated by using UV/Vis spectroscopy, NMR spectroscopy, and X‐ray crystal structure determination of the host–guest assemblies. The electrochemical and photophysical studies demonstrated the occurrence of photoinduced electron transfer from bisporphyrin to TCNQ/C₆₀/C₇₀ in the respective host–guest assemblies. The cyclic host can form complexes with C₆₀ and C₇₀ with association constants of (2.8±0.2)×10⁵ and (1.9±0.3)×10⁸ m ⁻¹, respectively; the latter value represents the highest binding affinity for C₇₀ reported so far for zinc(II) bisporphyrinic receptors. This high selectivity for the binding of C₇₀ versus C₆₀ allows the easy extraction and efficient isolation of C₇₀ from a C₆₀/C₇₀ fullerene mixture. Experimental evidence was substantiated by DFT calculations.     

Cyclic Zinc(II) Bisporphyrin‐Based Molecular Switches: Supramolecular Control of Complexation‐Mediated Conformational Switching and Photoinduced Electron Transfer

A cyclic zinc(II) bisporphyrin with flexible linker was employed as a dynamic molecular switch under the regulation of π‐acceptors (tetracyanoquinodimethane, trinitrofluorenone, 9‐dicyanomethylenefluorene) and bidentate N‐donor ligands (1,4‐diazabicyclo[2.2.2]octane, pyrazine, 4,4′‐bipyridine). The cyclic bisporphyrin host can efficiently encapsulate the π‐acceptor guests through the strong π–π interaction, which can be replaced again by using a bidentate N‐donor ligand, which coordinates strongly with the metal centers. The open conformation of the bisporphyrin can be efficiently recovered by removing the bidentate ligands using Cu⁺ ion. During the process, two porphyrin rings also reversibly change their relative orientation between perpendicular and parallel. The behavior of the cyclic bisporphyrin was followed by using UV/Vis, ¹H NMR, fluorescence, and electrochemical analyses along with X‐ray structure determination of the complexes. Moreover, control of photoinduced electron transfer (PET “ON‐OFF”) is also achieved by the use of guest exchange. Association constants for the host–guest binding were very high, which further explains the robust nature of such assemblies in solution. The experimental evidence is supported by DFT calculations. Such controllable dynamic features can constitute a new step towards "smart" adaptive molecular devices and the emergence of such systems is of significant interest in supramolecular chemistry.     

Selective Detection of Multicarboxylate Anions based on “Turn on” Electron Transfer by Self‐Assembled Molecular Rectangles

Two new large molecular rectangles ( 4 and 5 ) were obtained by the reaction of two different dinuclear arene ruthenium complexes [Ru₂(arene)₂(O O)₂Cl₂] (arene=p‐cymene; O O=2,5‐dihydroxy‐1,4‐benzoquinonato ( 2 ), 6,11‐dihydroxy‐5,12‐naphthacene dionato ( 3 )) with the unsymmetrical amide (N‐[4‐(pyridin‐4‐ylethynyl)phenyl]isonicotinamide) donor ligand 1 in methanol in the presence of AgO₃SCF₃, forming tetranuclear cations of the general formula [Ru₄(arene)₄( )₂(O O)₂]⁴⁺. Both rectangles were isolated in good yields as triflate salts and were characterized by multinuclear NMR, ESI‐MS, UV/Vis, and photoluminescence spectroscopy. The crystal structure of 5 was determined by X‐ray diffraction. Luminescent rectangle 5 was used for anion sensing with an amide ligand as a hydrogen‐bond donor and an arene–ruthenium acceptor as a signaling unit. Rectangle 5 strongly bound multicarboxylate anions, such as oxalate, tartrate, and citrate, in UV/Vis titration experiments in 1:1 ratios, in contrast to monoanions, such as F^?, Cl^?, NO₃^?, PF₆^?, CH₃COO^?, and C₆H₅COO^?. The fluorescence titration experiment showed a large fluorescence enhancement of 5 upon binding to multicarboxylate anions, which could be attributed to blocking of the photoinduced electron transfer process from the arene–ruthenium moiety to the amidic donor in 5 ; this was likely to be a result of hydrogen bonding between the ligand and the anion. On the other hand, rectangle 5 was not selective towards any other anions. To the naked eye, multicarboxylate anions in a solution of 5 in methanol appear greenish upon irradiation with UV light.     

Development of C3‐Symmetric Tris‐Urea Low‐Molecular‐Weight Gelators

This article describes recent developments in C₃‐symmetric tris‐urea low‐molecular‐weight gelators and their applications. The C₃‐symmetric tris‐ureas are excellent frameworks to form supramolecular polymers through noncovalent interactions. In organic solvents, hydrophobic tris‐ureas form supramolecular gels. Amphiphilic tris‐ureas form supramolecular gels in aqueous media. Functional supramolecular gels were prepared by introducing appropriate functional groups into the outer sphere of tris‐ureas. Supramolecular hydrogels obtained from amphiphilic tris‐ureas were used in the electrophoresis of proteins. These electrophoreses results showed several unique characteristics compared to typical electrophoreses results obtained using polyacrylamide matrices.

     

Dimeric Capsules Formed by Tetra‐CMPO Derivatives of (Thia)Calix[4]arenes

Thiacalix[4]arene 2 , calix[4]arene 3 a and its tetraether fixed in the cone conformation 3 b form homo‐ and heterodimeric capsules in apolar solvents, which are held together by a seam of NH???O=P hydrogen bonds between carbamoylmethyl phospine oxide functions attached to their wide rim. Their internal volume of ～370 ų requires the inclusion of a suitable guest. Although neutral molecules such as adamantane (derivatives) or tetraethylammonium cations form kinetically stable complexes (¹H‐ and ³¹P‐time scale), the included solvent is rapidly exchanged. The internal mobility of the included tetraethylammonium cation is distinctly higher (ΔG=42.5 and 49.7 kJ mol^?1 for 3 a and 3 b ) than that for similar capsules of tetraurea calix[4]arenes 1 . Mixtures of 1 with 2 , 3 a , or 3 b contain only the two homodimers but the heterodimerization occurs with the tetraloop tetraurea 6 , which cannot form homodimers. Two dimers with cationic guests ( 2? (C₅H₅)₂Co⁺ ?2 and 3 a? Et₃NH⁺ ? H₂O ?3 a ) were confirmed by single‐crystal X‐ray analysis.     

Controlled Self‐Assembly by Mono‐p‐sulfonatocalix[n]arenes and Bis‐p‐sulfonatocalix[n]arenes

The complexation‐induced critical aggregation concentrations of 1‐pyrenemethylaminium by mono‐p‐sulfonatocalix[n]arenes and bis‐p‐sulfonatocalix[n]arenes (n=4, 5) were systemically measured by fluorescence spectroscopy. In all cases, the complexation‐induced critical aggregation concentration decreases by about 3 times upon addition of p‐sulfonatocalix[n]arenes. However, the optimal molar ratios for the aggregation of 1‐pyrenemethylaminium by mono‐p‐sulfonatocalix[n]arenes and bis‐p‐sulfonatocalix[n]arenes are distinctly different: For mono‐p‐sulfonatocalix[n]arenes, the optimum mixing ratio for the aggregation of 1‐pyrenemethylaminium is 1:4 mono‐p‐sulfonatocalix[n]arenes/1‐pyrenemethylaminium, whereas only 2.5 molecules of 1‐pyrenemethylaminium can be bound by one cavity of bis‐p‐sulfonatocalix[n]arenes. The intermolecular complexation of mono‐p‐sulfonatocalix[n]arenes and bis‐p‐sulfonatocalix[n]arenes with 1‐pyrenemethylaminium led to the formation of two distinctly different nanoarchitectures, which were shown to be nanoscale vesicle and rod aggregates, respectively, by using dynamic laser scattering, TEM, and SEM. This behavior is also different from the fiber‐like aggregates with lengths of several micrometers that were formed by 1‐pyrenemethylaminium itself above its critical aggregation concentration. Furthermore, the obtained nanoaggregates exhibit benign water solubility, self‐labeled fluorescence, and, more importantly, temperature responsiveness.     

Nanoparticle Vesicles Through Self Assembly of Cyclodextrin‐ and Adamantyl‐Modified Silica

Stable nanoparticle vesicles were for the first time prepared from adamantyl‐ and cyclodextrin (CD)‐modified silica nanoparticles forming host–guest interactions in aqueous solution. Adamantyl‐functionalized nanoparticles were obtained from thiol‐isocyanate reaction of thiol‐modified nanoparticles with 1‐adamantyl isocyanate. The CD modified silica particles were isolated from a reaction of mono‐6‐para‐toluenesulfonyl‐β‐cyclodextrin with the thiol functionalized silica under microwave conditions in basic media. The obtained particles were characterized in respect of agglomeration and self‐assembly behavior in aqueous solution by dynamic light scattering and transmission electron microscopy. The found vesicle structures are exceptionally stable even after evaporation of water. Such inorganic hollow spheres formed through self‐assembly processes may be important for chemical storage and transport. The technique of chemically‐driven assembly is an attractive option to form useful complex structures by tunable agglomeration.

     

Structures and Properties of Spherical 90‐Vertex Fullerene‐Like Nanoballs

By applying the proper stoichiometry of 1:2 to [Cp^RFe(η⁵‐P₅)] and CuX (X=Cl, Br) and dilution conditions in mixtures of CH₃CN and solvents like CH₂Cl₂, 1,2‐Cl₂C₆H₄, toluene, and THF, nine spherical giant molecules having the simplified general formula [Cp^RFe(η⁵‐P₅)]@[{Cp^RFe(η⁵‐P₅)}₁₂{CuX}₂₅(CH₃CN)₁₀] (Cp^R=η⁵‐C₅Me₅ (Cp*); η⁵‐C₅Me₄Et (Cp^Et); X=Cl, Br) have been synthesized and structurally characterized. The products consist of 90‐vertex frameworks consisting of non‐carbon atoms and forming fullerene‐like structural motifs. Besides the mostly neutral products, some charged derivatives have been isolated. These spherical giant molecules show an outer diameter of 2.24 (X=Cl) to 2.26 nm (X=Br) and have inner cavities of 1.28 (X=Cl) and 1.20 nm (X=Br) in size. In most instances the inner voids of these nanoballs encapsulate one molecule of [Cp*Fe(η⁵‐P₅)], which reveals preferred orientations of π–π stacking between the cyclo‐P₅ rings of the guest and those of the host molecules. Moreover, π–π and σ–π interactions are also found in the packing motifs of the balls in the crystal lattice. Electrochemical investigations of these soluble molecules reveal one irreversible multi‐electron oxidation at E_p=0.615 V and two reduction steps (?1.10 and ?2.0 V), the first of which corresponds to about 12 electrons. Density functional calculations reveal that during oxidation and reduction the electrons are withdrawn or added to the surface of the spherical nanomolecules, and no Cu²⁺ species are involved.