Covalent incorporation of methyl red dyes into double-stranded DNA for their ordered clustering

An ordered dye cluster of Methyl Reds was formed in double-stranded DNA by hybridizing two complementary DNA-dye conjugates, each involving a Methyl Red moiety on a threoninol linker and a 1,3-propanediol spacer arranged alternately in the middle of the DNA sequence. In the duplex, Methyl Reds from each strand were axially stacked antiparallel to each other, as determined from NMR analysis. This clustering of Methyl Reds induced distinct changes in both UV/Vis and CD spectra. Single-stranded DNA-Methyl Red conjugates on D-threoninol linkers and (1,3-propanediol) spacers exhibited broad absorption spectra with lambda(max) at around 480 nm, and almost no CD was observed at around the absorption maximum of Methyl Red. However, as Methyl Reds were clustered by hybridization, lambda(max) shifted towards shorter wavelengths with respect to its monomeric transition. This hypsochromic shift increased as the number of Methyl Red molecules increased. Furthermore, a positive couplet was also strongly induced here. These dye clusters are H-aggregates, in which molecular excitons are coupled. The positive couplet demonstrates that the clusters on D-threoninol form a right-handed helix. In contrast, the induced CD became much weaker with Methyl Red on L-threoninol, which intrinsically prefers counterclockwise winding. Thus, mutual orientation of the stacked dye molecules was controlled by the chirality of the linker.     

A Tethered Porphyrin Dimer with π Overlap of a Single Pyrrole Ring

The special pair of the bacterial photosystem has been modeled with a porphyrin dimer (the partial structure is shown). As with the natural system, only one pyrrole ring from each monomer subunit participates in π overlap.     

New Pentacoordinated Rhodium Species as Unexpected Products during the In Situ Generation of Dimeric Diphosphine‐Rhodium Neutral Catalysts

Dimeric rhodium complexes of the type [Rh(PP)(μ₂‐Cl)]₂ (PP=diphosphine) are often used as precatalysts and are generated “in situ” from the corresponding diolefin complexes by exchange of the diene with the desired diphosphine. Herein, we report that the “in situ” procedure also leads to unexpected monomeric pentacoordinated neutral complexes of the type [RhCl(PP)(diolefin)], for the first time herein characterized by NMR spectroscopy and X‐ray crystallography for the ligands 1,4‐bis(diphenylphosphino)propane (DPPP), 1,4‐bis(diphenylphosphino)butane (DPPB), and 2,2′‐bis(diphenylphosphino)‐1,1′‐binaphthyl (BINAP). The pentacoordinated complexes are in equilibrium with the dimeric target compound [Rh(PP)(μ₂‐Cl)]₂. The equilibrium is influenced by the rhodium‐diolefin precursor, the solvent and the temperature. Based on the results of NMR and UV/Vis spectroscopic analysis (kinetics) it could be shown that the pentacoordinated complex [RhCl(PP)(diolefin)] may arise both from the “in situ”‐generated neutral complex [Rh(PP)(μ₂‐Cl)] by reaction with the free diolefin and, more surprisingly, directly from [Rh(diolefin)(μ₂‐Cl)]₂ and the diphosphine.     

Influence of Arrestin on the Photodecay of Bovine Rhodopsin

Continued activation of the photocycle of the dim‐light receptor rhodopsin leads to the accumulation of all‐trans‐retinal in the rod outer segments (ROS). This accumulation can damage the photoreceptor cell. For retinal homeostasis, deactivation processes are initiated in which the release of retinal is delayed. One of these processes involves the binding of arrestin to rhodopsin. Here, the interaction of pre‐activated truncated bovine visual arrestin (Arr^Tr) with rhodopsin in 1,2‐diheptanoyl‐sn‐glycero‐3‐phosphocholine (DHPC) micelles is investigated by solution NMR techniques and flash photolysis spectroscopy. Our results show that formation of the rhodopsin–arrestin complex markedly influences partitioning in the decay kinetics of rhodopsin, which involves the simultaneous formation of a meta II and a meta III state from the meta I state. Binding of Arr^Tr leads to an increase in the population of the meta III state and consequently to an approximately twofold slower release of all‐trans‐retinal from rhodopsin.     

Host–Guest Interactions of Phosphorescent Molecular Tweezers Based on an Alkynylplatinum(II) Terpyridine System with Polyaromatic Hydrocarbons

Host–guest interactions of a molecular tweezer complex 1 with various planar organic molecules including polyaromatic hydrocarbons (PAHs) were investigated by 1D and 2D ¹H NMR spectroscopy, UV/Vis absorption and emission titration studies. 2D and DOSY NMR spectroscopies support the sandwiched binding mode based on 1:1 host–guest interactions. The binding constants (K_S) of complex 1 for various PAHs were determined by NMR titration studies and the values were found to span up to an order of 10⁴ M ^?1 for coronene to no observable interaction for benzene, indicating that the π‐surface area is important for such host–guest interactions. The substituent effect on the host–guest interaction based on the guest series of 9‐substituted anthracenes was also studied. In general, a stronger interaction was observed for the anthracene guest with electron‐donating groups, although steric and π‐conjugation factors cannot be completely excluded. The photophysical responses of complex 1 upon addition of various PAHs were measured by UV/Vis and emission titration studies. The UV/Vis absorption spectra were found to show a drop in absorbance of the metal‐to‐ligand charge‐transfer (MLCT) and ligand‐to‐ligand charge‐transfer (LLCT) admixture band upon addition of various guest molecules to 1 , whereas the emission behavior was found to change differently depending on the guest molecules, showing emission enhancement and/or quenching. It was found that emission quenching occurred either via energy transfer or electron transfer pathway or both, while emission enhancement was caused by the increase in rigidity of complex 1 as a result of host–guest interaction.     

Light Dynamics of the Retinal-Disease-Relevant G90D Bovine Rhodopsin Mutant

The RHO gene encodes the G-protein-coupled receptor (GPCR) rhodopsin. Numerous mutations associated with impaired visual cycle have been reported; the G90D mutation leads to a constitutively active mutant form of rhodopsin that causes CSNB disease. We report on the structural investigation of the retinal configuration and conformation in the binding pocket in the dark and light-activated state by solution and MAS-NMR spectroscopy. We found two long-lived dark states for the G90D mutant with the 11-cis retinal bound as Schiff base in both populations. The second minor population in the dark state is attributed to a slight shift in conformation of the covalently bound 11-cis retinal caused by the mutation-induced distortion on the salt bridge formation in the binding pocket. Time-resolved UV/Vis spectroscopy was used to monitor the functional dynamics of the G90D mutant rhodopsin for all relevant time scales of the photocycle. The G90D mutant retains its conformational heterogeneity during the photocycle.     

Probing the Exciton Density of States in Semiconductor Nanocrystals Using Integrated Photoluminescence Spectroscopy

Summary.  We present the results of a comparative analysis of the absorption and photoluminescence excitation (PLE) spectra vs. integrated photoluminescence (IPL) measured as a function of the excitation wavelength for a number of samples containing II–VI semiconductor nanocrystals (NCs) produced by different techniques. The structure of the absorption and PL spectra due to excitons confined in NCs and difficulties with the correct interpretation of the transmittance and PLE results are discussed. It is shown that, compared to the conventional PLE, the IPL intensity plotted against the excitation wavelength (IPLE spectra) reproduce better the structure of the absorption spectra. Therefore, IPLE spectroscopy can be successfully used for probing the quantized electron-hole (e-h) transitions in semiconductor nanocrystals. Received October 16, 2001. Accepted (revised) January 7, 2002     

LED‐Illuminated NMR Studies of Flavin‐Catalyzed Photooxidations Reveal Solvent Control of the Electron‐Transfer Mechanism

Mechanistic insights into chemical photocatalysis are mainly the domain of UV/Vis spectroscopy, because NMR spectroscopy has been limited by the type of illumination so far. An improved LED‐based illumination device can be used to obtain NMR reaction profiles of photocatalytic reactions under synthetic conditions and perform both photo‐CIDNP and intermediate studies. Flavin‐catalyzed photooxidations of alcohols show the potential of this setup. After identical initial photoreaction steps the stabilization of a downstream intermediate is the key to the further reaction mechanism and the reactivity. As a chemical photocatalyst flavin can act either as a one‐ or a two‐electron mediator when the stability of the zwitterionic radical pair is moldulated in different solvents. This demonstrates the importance of downstream intermediates and NMR‐accessible complementary information in photocatalytic reactions and suggests the control of photoorganic reactions by solvent effects.     

Light Dynamics of the Retinal‐Disease‐Relevant G90D Bovine Rhodopsin Mutant

The RHO gene encodes the G‐protein‐coupled receptor (GPCR) rhodopsin. Numerous mutations associated with impaired visual cycle have been reported; the G90D mutation leads to a constitutively active mutant form of rhodopsin that causes CSNB disease. We report on the structural investigation of the retinal configuration and conformation in the binding pocket in the dark and light‐activated state by solution and MAS‐NMR spectroscopy. We found two long‐lived dark states for the G90D mutant with the 11‐cis retinal bound as Schiff base in both populations. The second minor population in the dark state is attributed to a slight shift in conformation of the covalently bound 11‐cis retinal caused by the mutation‐induced distortion on the salt bridge formation in the binding pocket. Time‐resolved UV/Vis spectroscopy was used to monitor the functional dynamics of the G90D mutant rhodopsin for all relevant time scales of the photocycle. The G90D mutant retains its conformational heterogeneity during the photocycle.     

Highly Effective Water Oxidation Catalysis with Iridium Complexes through the Use of NaIO4

Exceptional water oxidation (WO) turnover frequencies (TOF=17 000 h^?1), and turnover numbers (TONs) close to 400 000, the largest ever reported for a metal‐catalyzed WO reaction, have been found by using [Cp*Ir^III(NHC)Cl₂] (in which NHC=3‐methyl‐1‐(1‐phenylethyl)‐imidazoline‐2‐ylidene) as the pre‐catalyst and NaIO₄ as oxidant in water at 40 °C. The apparent TOF for [Cp*Ir^III(NHC)X₂] ( 1 X , in which X stands for I ( 1 I ), Cl ( 1 Cl ), or triflate anion ( 1 OTf )) and [(Cp*‐NHCMe)Ir^IIII₂] ( 2 ) complexes, is kept constant during almost all of the O₂ evolution reaction when using NaIO₄ as oxidant. The TOF was found to be dependent on the ligand and on the anion (TOF ranging from ≈600 to ≈1100 h^?1 at 25 °C). Degradation of the complexes by oxidation of the organic ligands upon reaction with NaIO₄ has been investigated. ¹H NMR, ESI‐MS, and dynamic light‐scattering measurements (DLS) of the reaction medium indicated that the complex undergoes rapid degradation, even at low equivalents of oxidant, but this process takes place without formation of nanoparticles. Remarkably, three‐month‐old solution samples of oxidized pre‐catalysts remain equally as active as freshly prepared solutions. A UV/Vis feature band at λ_max=405 nm is observed in catalytic reaction solutions only when O₂ evolves, which may be attributed to a resting state iridium speciation, most probably Ir–oxo species with an oxidation state higher than IV.     

Ligand‐to‐Ligand Charge‐Transfer Transitions of Platinum(II) Complexes with Arylacetylide Ligands with Different Chain Lengths: Spectroscopic Characterization,Effect of Molecular Conformations,and Density Functional Theory Calculations

The complexes [Pt(tBu₃tpy){C?C(C₆H₄C?C)_n?1R}]⁺ (n=1: R=alkyl and aryl (Ar); n=1–3: R=phenyl (Ph) or Ph‐N(CH₃)₂‐4; n=1 and 2, R=Ph‐NH₂‐4; tBu₃tpy=4,4’,4’’‐tri‐tert‐butyl‐2,2’:6’,2’’‐terpyridine) and [Pt(Cl₃tpy)(C?CR)]⁺ (R=tert‐butyl (tBu), Ph, 9,9’‐dibutylfluorene, 9,9’‐dibutyl‐7‐dimethyl‐amine‐fluorene; Cl₃tpy=4,4’,4’’‐trichloro‐2,2’:6’,2’’‐terpyridine) were prepared. The effects of substituent(s) on the terpyridine (tpy) and acetylide ligands and chain length of arylacetylide ligands on the absorption and emission spectra were examined. Resonance Raman (RR) spectra of [Pt(tBu₃tpy)(C?CR)]⁺ (R=n‐butyl, Ph, and C₆H₄‐OCH₃‐4) obtained in acetonitrile at 298 K reveal that the structural distortion of the C?C bond in the electronic excited state obtained by 502.9 nm excitation is substantially larger than that obtained by 416 nm excitation. Density functional theory (DFT) and time‐dependent DFT (TDDFT) calculations on [Pt(H₃tpy)(C?CR)]⁺ (R= n‐propyl (nPr), 2‐pyridyl (Py)), [Pt(H₃tpy){C?C(C₆H₄C?C)_n?1Ph}]⁺ (n=1–3), and [Pt(H₃tpy){C?C(C₆H₄C?C)_n?1C₆H₄‐N(CH₃)₂‐4}]⁺/+H⁺ (n=1–3; H₃tpy=nonsubstituted terpyridine) at two different conformations were performed, namely, with the phenyl rings of the arylacetylide ligands coplanar (“cop”) with and perpendicular (“per”) to the H₃tpy ligand. Combining the experimental data and calculated results, the two lowest energy absorption peak maxima, λ₁ and λ₂, of [Pt(Y₃tpy)(C?CR)]⁺ (Y=tBu or Cl, R=aryl) are attributed to ¹[π(C?CR)→π*(Y₃tpy)] in the “cop” conformation and mixed ¹[d_π(Pt)→π*(Y₃tpy)]/¹[π(C?CR)→π*(Y₃tpy)] transitions in the “per” conformation. The lowest energy absorption peak λ₁ for [Pt(tBu₃tpy){C?C(C₆H₄C?C)_n?1C₆H₄‐H‐4}]⁺ (n=1–3) shows a redshift with increasing chain length. However, for [Pt(tBu₃tpy){C?C(C6H4C?C)_n?1C₆H₄‐N(CH₃)₂‐4}]⁺ (n=1–3), λ₁ shows a blueshift with increasing chain length n, but shows a redshift after the addition of acid. The emissions of [Pt(Y₃tpy)(C?CR)]⁺ (Y=tBu or Cl) at 524–642 nm measured in dichloromethane at 298 K are assigned to the ³[π(C?CAr)→π*(Y₃tpy)] excited states and mixed ³[d_π(Pt)→π*(Y₃tpy)]/³[π(C?C)→π*(Y₃tpy)] excited states for R=aryl and alkyl groups, respectively. [Pt(tBu₃tpy){C?C(C₆H₄C?C)_n?1C₆H₄‐N(CH₃)₂‐4}]⁺ (n=1 and 2) are nonemissive, and this is attributed to the small energy gap between the singlet ground state (S₀) and the lowest triplet excited state (T₁).     

Synthesis and Optical Properties of Water‐Soluble Polyglycerol‐Dendronized Rylene Bisimide Dyes

Four new water‐soluble polyglycerol‐dendronized perylene, terrylene, and quaterrylene bisimides have been synthesized and characterized with respect to their optical properties in polar organic solvents and water by using UV/Vis and fluorescence spectroscopy. All of these dyes were highly soluble in water, but the size of the chosen polyglycerol dendron was only sufficient to completely suppress dye aggregation for the core‐unsubstituted perylene derivative. Their high solubility in water and their absorption and emission wavelengths up to the NIR region make the core‐unsubstituted perylene and terrylene bisimides ideal candidates for applications in bioimaging, whilst the lack of fluorescence for quaterrylene bisimide in all polar solvents does not warrant further investigation of this chromophore in fluorescence and imaging applications. Likewise, tuning of the emission of rylene bisimides towards longer wavelengths by employing electron‐donating bay substituents is not a promising strategy, owing to the lower fluorescence quantum yields in polar solvents and, in particular, in water.     

Impact of a Water-Soluble Gallic Acid-Based Dendrimer on the Color-Stabilizing Mechanisms of Anthocyanins

The interaction of two anthocyanins with a water-soluble polyanionic dendrimer was studied through UV/Vis, stopped-flow, and NMR spectroscopy. Cyanidin-3-glucoside (cy3glc) revealed a stronger interaction than malvidin-3-glucoside (mv3glc) at pH 1 according to their apparent association constants. A higher color increased was also obtained for cy3glc at pH 3.5 as a result of this stronger interaction. A high-frequency chemical shift of the cy3glc aromatic protons suggest the formation of ionic pairs. The interaction parameters (K≈700 m ⁻¹, n≈295) indicated the binding of approximately two anthocyanin molecules by each sulfate group. The equilibrium and rate constants of cy3glc in the presence of dendrimer showed an increased stability of the flavylium cation and a higher protection of this species from hydration (pK′_a and pK_h increased almost one pH unit). The tuning and color stabilization of anthocyanins by using this dendrimer allow novel applications as colorimetric sensors for food packaging.     

Characterisation of Nanohybrids of Porphyrins with Metallic and Semiconducting Carbon Nanotubes by EPR and Optical Spectroscopy

Single‐walled carbon nanotubes (SWCNTs) are noncovalently functionalised with octaethylporphyrins (OEPs) and the resulting nanohybrids are isolated from the free OEPs. Electron paramagnetic resonance (EPR) spectroscopy of cobalt(II)OEP, adsorbed on the nanotube walls by π–π‐stacking, demonstrates that the CNTs act as electron acceptors. EPR is shown to be very effective in resolving the different interactions for metallic and semiconducting tubes. Moreover, molecular oxygen is shown to bind selectively to nanohybrids with semiconducting tubes. Water solubilisation of the porphyrin/CNT nanohybrids using bile salts, after applying a thorough washing procedure, yields solutions in which at least 99 % of the porphyrins are interacting with the CNTs. Due to this purification, we observe, for the first time, the isolated absorption spectrum of the interacting porphyrins, which is strongly red‐shifted compared to the free porphyrin absorption. In addition a quasi‐complete quenching of the porphyrin fluorescence is also observed.