A quantum-chemical study of aza derivatives of (<Emphasis Type="Italic">E</Emphasis>)-1-styrylnaphthalene in the ground and lowest electronically excited states

The structures of (E)-1-styrylnaphthalene (1SN) and its aza derivatives 1-styrylisoquinoline (1SiQ) and 4- and 8-styrylquinolines (4SQ and 8SQ, respectively) in the neutral and protonated forms were calculated by the semiempirical (PM3) and DFT (B3LYP/6-31G*) methods. It follows from the DFT data that, in the ground state (S0), 1SiQ and 8SQ are planar, whereas 1SN, neutral 4SQ, and all protonated azastyrylnaphthalenes are nonplanar with aromatic cores twisted by 5 to 40° out of the plane of the double bond and with linear correlation between the torsion angles of the two cores. The calculated adiabatic excitation energy (E _ad) varies within 61–64 kcal mol^?1 for the neutral compounds and decreases for the protonated forms to 48, 45, and 33 kcal mol^?1 for 1SiQH⁺, 4SQH⁺, and 8SQH⁺, respectively. The lower E _ad value for 8SQH⁺ is in qualitative agreement with a lower photoisomerization quantum yield for this compound as compared with that for other protonated azastyrylnaphthalenes.     

Structure effects of the protonated lincomycin molecule on the mechanism of its complexation with organic compounds

The mechanism of complexation of the protonated lincomycin molecule with para-substituted nitrobenzenes in the gas phase is analyzed by quantum chemical methods. The regioselectivity of lincomycin protonation is treated in a B3LYP/6-31G(d′, p) approximation; the geometrical structure and conformation of the molecule are analyzed. The lincomycin molecule is protonated at the nitrogen atom of the pyrrolidine cycle. In stable conformers, a pseudovoid is formed and stabilized by intramolecular hydrogen bonding. The cross section of the pseudovoid (1.77–2.62 Å) is too small for the protonated lincomycin molecule to participate in host guest complexation with organic compounds. According to B3LYP/6-31G(d′, p) calculations, complexation of the protonated lincomycin molecule with nitrobenzenes occurs through hydrogen bonding.     

Comparative reactivity of substituted 1,3-and 1,4-thiasilinane <Emphasis Type="Italic">S</Emphasis>-oxides in the sila-Pummerer rearrangement and inversion of the thiocarbonyl group

The thermal sila-Pummerer rearrangement of diastereomeric 2,3,3-trimethyl-1,3-thiasilinane S-oxides was studied. Introduction of the methyl group in the 2 position of 3,3-trimethyl-3-thiasilinane S-oxide slows down the rearrangement. When heated in CCl₄, the trans isomer (2-Me_eq, SO_eq) converts into the cis isomer (2-Me_eq, SO_ax) which rapidly rearranges into 2,2,7-trimethyl-1,6,2-oxathiasilepane. On the contrary, the isomeric 2,4,4-trimethyl-1,4-thiasilinane S-oxide is thermally stable up to 160°C in DMSO. The inversion at the sulfur atom in 2,3,3-trimethyl-1,3-thiasilinane S-oxides and 2,4,4-trimethyl-1,4-thiasilinane S-oxides under the action of triethyloxonium tetrafluoroborate was studied. The trans isomer of 2,3,3-trimethyl-1,3-thiasilinane S-oxide (2-Me_eq, SO_eq) forms with Et₃O⁺BF ₄ ^? a salt which decomposes in two ways. The first involves recovery of the starting sulfoxide due to Sn2 substitution at the carbon atom of the ethoxy group, and the second, convertion into the cis isomer (2-Me_eq, SO_ax) which rearranges into 2,2,7-trimethyl-1,6,2-oxathiasilepane. Under the same conditions, the cis isomer of 2,3,3-trimethyl-1,3-thiasilinane S-oxide (2-Me_eq, SO_eq) decomposes to form siloxanes. trans-2,4,4-Trimethyl-4-thiasilinane S-oxide (2-Me_eq, SO_eq) under the action of Et₃O⁺BF ₄ ^? convers into the cis isomer (2-Me_eq, SO_ax). The B3LYP/6-311G(d,p) theoretical analysis showed that the thermal inversion at the sulfur atom in the compounds studied has a high energy barrier.     

Polarity and structure of eight-membered organosilicon compounds with planar fragments

For the first time is determined the polarity of eight-membered silocyns with planar fragments. By the methods of dipole moments and theoretical calculations (DFT B3LYP/6-31G*) of 1,3,2-dioxasilocyns is established that in these compounds occurs the conformational equilibrium of the forms bath-chair and distorted bath with the predominance of the first, in this case the bonds C(sp ³)-S and C(sp ³)-H of the exocyclic MeSCH₂ group are in the not eclipsed gauche orientation relative to each other.     

Thermal deformation thermodynamics of a smectite mineral

A method has been purposed to calculate some of the thermodynamic quantities for the thermal deformation of a smectite without using any basic thermodynamic data. The Hanç?l? (Keskin, Ankara, Turkey) bentonite containing a smectite of 88% by volume was taken as material. Thermogravimetric (TG) and differential thermal analysis (DTA) curves of the sample were obtained. Bentonite samples were heated at various temperatures between 25–900°C for the sufficient time (2 h) until to establish the thermal deformation equilibrium.Cation-exchange capacity (CEC) of heated samples was determined by using the methylene blue standard method. The CEC was used as a variable of the equilibrium. An arbitrary equilibrium constant (K _a) was defined similar to chemical equilibrium constant and calculated for each temperature by using the corresponding CEC-value. The arbitrary changes in Gibbs energy (ΔG _a ⁰ ) were calculated from K _a-values. The real change in enthalpy (ΔH ⁰) and entropy (ΔS ⁰) was calculated from the slopes of the lnK vs. 1/T and ΔG vs. T plots, respectively. The real changes in Gibbs energy (ΔG ⁰) and real equilibrium constant (K) were calculated by using the ΔH ⁰ and ΔS ⁰ values. The results at the two different temperature intervals are summarized as below: ΔG ₁ ⁰ =ΔH ₁ ⁰ ?ΔS ₁ ⁰ T=?RTlnK ₁=47000?53t, (200–450°C), and ΔG ₂ ⁰ =ΔH ₂ ⁰ -ΔS ₂ ⁰ T=?RTlnK ₂=132000?164T, (500–800°C).     

Synthesis,crystal structure,and kinetics of thermal decomposition of the Zn(II) complex with vanillin

A complex [Zn(C₈H₇O₃)₂(H₂O)₂] (C₈H₈O₃ is vanillin) has been synthesized and characterized by IR, elemental analysis, and X-ray diffraction single-crystal analysis. The crystals are monoclinic, space group C2/c, a = 22.236(8) Å, b = 10.594(2) Å, c = 7.8190(16) Å, α = 89.90(3)°, β = 106.87(4)°, γ = 89.99(3)°, V = 1762.6(8) ų, Z = 4, F(000) = 832, S = 1.079, ρ _c = 1.521g cm^?3, R = 0.0221, R _w = 0.0604, μ = 1.433 mm^?1. The Zn²⁺ ion is six-coordinated with a distorted octahedron geometry. The complex forms a three-dimensional network through intermolecular hydrogen bonds. The thermal decomposition kinetics of the complex for the second stage was studied under non-isothermal conditions by the TG and DTG methods. The kinetic equation can be expressed as dα/dt = Ae^?E/RT 2(1 ? α)[1 ? ln(1 ? α)]^1/2. The kinetic parameters (E, A), activation entropy ΔS ^≠, and activation free-energy ΔG ^≠ were also gained.     

Kinetics and mechanism of monomolecular heterolysis of commercial organohalogen compounds: XLIII. Solvent effect on activation parameters of dehydrochlorination of 3-chloro-3-methylbut-1-ene. Correlation analysis of solvation effects

The influence of temperature on the rate of dehydrochlorination of 3-chloro-3-methylbut-1-ene in 17 aprotic and 13 protic solvents, ν = k[C₅H₉Cl], was studied by the verdazyl method. In aprotic solvents, the electrophilicity, ionizing power, and cohesion of solvents decrease ΔG ^≠ by increasing ΔS ^≠. The nucleophilicity and polarizability increase both ΔH ^≠ and ΔS ^≠ to equal extent and therefore do not affect ΔG ^≠. In protic solvents, the solvent nucleophilicity increases ΔH ^≠ to a greater extent than ΔS ^≠, and the overall effect of the nucleophilic solvation is small and negative.     

Structure and Chemical Bonding of the B<Subscript>3</Subscript>S<Stack><Subscript>n</Subscript><Superscript>0/−</Superscript></Stack> (<Emphasis Type="Italic">n</Emphasis> = 2–4) Boron Sulfide Clusters: A Density Functional Theory Investigation

A density functional theory investigation on the structural and bonding properties of B₃S _n ^?/0 (n = 2–4) series has been performed. Based on B3LYP and CCSD(T) calculations, we present the linear D _∞h B₃S₂ ^? (1, ³Σ_g) and D _∞h B₃S₂ (2, ²Π_u), the Y-shaped C _2v B₃S₃ ^? (3, ¹A₁) and C _2v B₃S₃ (4, ²B₂), and perfectly planar structures C _2v B₃S₄ ^? (5, ¹A₁) and C _2v B₃S₄ (6, ²B₂) that contain rhombic B₂S₂ rings. The 1–6 ground-state structures are planar with linear “B–B–B” core, in which the first and the second S atoms prefer to bond terminally to the terminal B, and the third S atom bonds to the center B, however, when the third S atom is added with the fourth, the atoms tend to be in the bridging positions of two adjacent B atoms. The growth pattern of B₃S _n ^?/0 (n = 2–4) clusters helps to understand the structural properties of the other small boron sulfide clusters. Bonding analyses reveal that a dual or single three-center one-electron (3c–1e) π hypervalent bonds located over the “B–B–B” core of D _∞h B₃S₂ ^? (1) and B₃S₂ (2), respectively. While C _2v B₃S₄ ^? (5) and B₃S₄ (6) with rhombic B₂S₂ rings as the center with –BS and –S units all possess 4c–4e bonds (o-bonds) in the rhombic B₂S₂ rings.     

Investigation of Solution p<Emphasis Type="Italic">K</Emphasis><Subscript>a</Subscript> and Thermodynamic Values of Lamivudine and Pefloxacin Drugs by Ab initio and DFT Methods

In this work we investigate the thermodynamic properties and pK_a value of lamivudine and pefloxacin drugs, in aqueous solutions, by ab initio and density functional theory (DFT) methods at different temperatures. Molecular structures and solute–solvent effects of the anions, cations, and neutral molecules of lamivudine and pefloxacin were studied by the polarizable continuum model (PCM). The calculation was done at the DFT-B3LYP/6-31+G(d) level of theory using Tomasi’s method to analyze the formation of intermolecular hydrogen bonds (IHB) in aqueous solution. The pK_a1 values of lamivudine and pK_a2 values of pefloxacin increase with temperature increase. In contrast, the pK_a1 values of pefloxacin decrease when the temperature increases. Further, the thermodynamic properties of the ionization processes (?H, ?S and ?G) of the drugs in aqueous solution were determined and discussed. The results of this work are in good agreement with the literature data at 298.15 K.     

An analysis of the vibrational structure of the UV absorption spectrum of methacryloyl chloride vapor

An analysis of the vibrational structure of the UV spectrum of methacryloyl chloride vapor was performed. The spectrum contained unique information about the torsional vibration levels of the trans and cis isomers in the ground (S ₀) and excited (S ₁) electronic states. 136 absorption bands were revealed, and ～85% of them were assigned. The 0-0 transition frequencies of the trans and cis isomers were found. Several Deslandres tables were constructed for torsional vibrations from 0-0 transition frequencies and “local origins” corresponding to fundamental and combined frequencies of both isomers. Systems of torsional levels up to high quantum number values (v ≈ 6–8) were determined, and the ω_e harmonic frequencies and χ ₁₁ anharmonicity coefficients were calculated for both isometric forms in the ground (S ₀) and excited (S ₁) states. The results were substantially different from those obtained in an analysis of Fourier-transform IR spectra.     

In Vitro Binding of Furadan to Bovine Serum Albumin

Under physiological conditions, the interaction between furadan (FRD) and bovine serum albumin (BSA) was investigated by spectroscopy including fluorescence emission, UV-visible absorption, scattering, circular dichroism (CD) spectra, synchronous and three-dimensional fluorescence spectra. The observed binding constant K _b and the number of binding sites n were determined by the fluorescence quenching method. The distance r between donor (BSA) and acceptor (FRD) was obtained according to the Förster theory of non-radiation energy transfer. The enthalpy change (ΔH ^θ ), Gibbs energy change (ΔG ^θ ) and entropy change (ΔS ^θ ) at four different temperatures were calculated. The process of binding was proposed to be a spontaneous process since the ΔG ^θ values were negative. The positive ΔS ^θ and ΔH ^θ values indicated that the interaction of FRD and BSA was driven mainly by hydrophobic interactions. The addition of FRD to BSA solutions leads to enhancement in scattering intensity, exhibiting the formation of an aggregate in solution. CD spectra, synchronous and three-dimensional fluorescence spectra were used to measure the structural change of BSA molecules with FRD present.     

Evaluation of the stability of dye heteroassociates formed in aqueous solutions

The additive tetraphenylarsonium-tetraphenylborate model of interactions was found to be applicable to the problem of “preexperimental” evaluation of the stability of associates formed by dye cations (Ct⁺) and anions (An^?) in aqueous solutions. The possibility of predicting equilibrium association constants K _as from preliminarily calculated ΔG(Ct⁺) and ΔG(An^?) and of solving the inverse problem was analyzed. The invariability of the ΔG(Ct⁺) and ΔG(An^?) values and the problem of bringing calculation results in consistency with the experimental K _as values are discussed.     

Surface disordering of classic and superionic crystals: A description in the framework of the stern model

The surface potential (φ_S) in ionic crystals: binary compounds of the type NaCl and superionic oxygen conductors of the type M _{1 ? c} ^IV Me _c ^III O_{2 ? c/2} are calculated with the aid of the Stern model. Effect of the energy of formation of defects, concentration of accessible sites (N _S), and concentration of admixtures on the temperature dependences of φ_S(T) is studied. Instances of high and low potentials are analyzed. It is demonstrated that the surface potential increases proportionally to the difference between the adsorption energies of individual defects, provided the absolute value of |ΔG _i| (ΔG _i < 0) and concentration N _S are sufficiently large. Values of isoelectric temperatures in NaCl crystals doped with admixtures of other valence are calculated. An attempt is undertaken to describe experimental data for silver halides with the aid of the model. Calculations of the surface potential in superionic oxygen conductors show that increasing concentration of surface vacancies is accompanied by segregation of the admixture cations in the surface layer.     

A quantum-chemical study of the thermodynamic properties of the CNOH<Subscript>3</Subscript> isomers

The B3LYP/6-311++G(3df,3pd) DFT method was used to determine the geometry and vibrational frequencies for the formamide, formaldoxime, nitrosomethane, oxaziridine, and formimide. The potential energy functions of the hindered internal rotations were calculated. The conformers of formaldoxime and formimide were determined. For all the molecules, including the conformers, the thermodynamic characteristics Δ_f H° (298 K), S°(298 K), C _p(298 K), and Δ_f G° (298 K) were determined. The temperature dependences C _p(T) within 298–1500 K were represented in the form of cubic polynomials.     

Thermodynamics of Viscous Flow of <Emphasis Type="Italic">tert</Emphasis>-Butanol with Butylamines: UNIFAC–VISCO,Grunberg–Nissan and McAllister Three Body Interaction Models for Viscosity Prediction and Quantum Chemical (DFT) Calculations

Thermodynamic activation parameters, enthalpies (ΔH ^?), entropies (ΔS ^?) and Gibbs energies (ΔG ^?) for viscous flow of the systems tert-butanol (TB)+n-butylamine (NBA), TB+di-n-butylamine (DBA) and TB+tri-n-butylamine (TBA) have been calculated from measured density and viscosity data at temperatures ranging from 303.l5 to 323.15 K over the composition range 0 ≤ x ₂ ≤ 1, where x ₂ is the mole fraction of TB. For all systems, the corresponding excess properties ΔH ^?E, ΔS ^?E and ΔG ^?E have been determined, which are negative in the whole range of composition. The observed negative excess activation properties have been accounted for in terms of dispersive forces and H-bonding. The derived properties are well represented by fourth degree polynomial equations whereas the excess properties could be fitted to third degree Redlich–Kister polynomial equations. Furthermore, the viscosities have been predicted by using the UNIFAC–VISCO model, Grunberg–Nissan model and McAllister three-body interaction model. The UNIFAC–VISCO model and Grunberg–Nissan model do not show good agreement with the experimental data, whereas the McAllister three-body interaction model shows excellent agreement for all three systems, with small average absolute percent deviations (AAD% = 0.6–2.3). The DFT-B3LYP method with the 6-311 G (d, p) basis set has been employed for the optimization of the geometry and calculation of the total energies of the pure compounds and their binary complexes.     

Thermodynamic Parameters of the Complex Formation of Copper(II) Ions with L-Serine and L-Homoserine

Complex formation of copper(II) ions with L-serine and L-homoserine at 298.15 K and ionic strength I 0.5, 1.0, and 1.5 (KNO₃) has been studied by means of potentiometry and calorimetry. Standard thermodynamic parameters (log K⁰, Δ_rG⁰, Δ_rH⁰, Δ_rS⁰) of the studied coordination equilibriums have been calculated.     

The thermodynamic properties of 5-vinyltetrazole and poly-5-vinyltetrazole over the temperature range from <Emphasis Type="Italic">T</Emphasis> → 0 to 350 K

The temperature dependences of the heat capacities of 5-vinyltetrazole and poly-5-vinyltetrazole were measured by adiabatic vacuum calorimetry over the temperature range 6-(350–370) K with errors of ～0.2%. The results were used to calculate the thermodynamic functions of the compounds, C _p ^° , H ^°(T) - H ^°(0), S ^°(T), and G ^°(T) - H ^°(0), over the temperature range from T → 0 to 350–370 K. The energy of combustion of 5-vinyltetrazole and poly-5-vinyltetrazole was measured in an isothermic-shell static bomb calorimeter. The standard enthalpies of combustion Δ _c H ^° and thermodynamic characteristics of formation Δ_f H ^°, Δ_f S ^°, and Δ_f G ^° at 298.15 K and p = 0.1 MPa were calculated. The results were used to determine the thermodynamic characteristics of polymerization of 5-vinyltetrazole over the temperature range from T → 0 to 350 K.     

Conformational analysis of 1,4-heterophosphinanes

Conformational analysis of 1,4-heterophosphinanes in solution, based on a combination of the dipole moment and Kerr effect methods, molecular mechanics, and quantum-chemical calculations (B3LYP/6-31G^*) was performed. It was established that, regardless the second heteroatom in the six-membered phosphorus-containing heterocycle (oxygen, sulfur, or silicon) and phosphorus coordination, these compounds prefer a chair conformation with an equatorial exocyclic phenyl substituent.     

Structure and Fluxional Behavior of Phenylmercury Derivatives of N,N'-Diarylform(benz)amidines

Activation barriers for fast 1,3-N,N' migrations of phenylmercury groups in the corresponding derivatives of N,N'-di(p-tolyl)form(benz)amidines have been calculated by density functional theory B3LYP/Gen, 6-311++G(d,p)/SDD to be ΔE _ZPE ^≠ = 4.5 and 3.0 kcal/mol. The results correspond to the data of dynamic NMR, which have shown the upper limit of activation barriers of these rearrangements (ΔG^≠) to be below 8 kcal/mol. The calculations have shown that the most stable is the E-syn form of N-phenylmercury-N,N'-di(p-tolyl)form(benz)amidines stabilized by supplementary intramolecular coordination of mercury atom with imine nitrogen atom of the amidine triad.     

Quantum-Chemical Study on Positional Selectivity in the Trimethylsilylation and Sulfonation of Pyrrole and <Emphasis Type="Italic">N</Emphasis>-Alkylpyrroles

Positional selectivity (α:β ratio) of electrophilic substitution in pyrrole, N-methylpyrrole, and N-tert-butylpyrrole was analyzed by ab initio [RHF/6-31G(d), MP2/6-31G(d)//RHF/6-31G(d)] and DFT [B3LYP/6-31G(d)] calculations of some σ-complexes derived from the substrates. The results of calculations with the use as model electrophilic species of trimethylsilyl cation [MP2/6-31G(d)//RHF/6-31G(d) and B3LYP/6-31G(d)] and SO₃ molecule [B3LYP/6-31G(d)] instead of proton are fairly consistent with the experimental data, according to which trimethylsilylation of pyrrole and its N-substituted derivatives with trimethylsilyl trifluoromethanesulfonate, as well as sulfonation with pyridine-sulfur trioxide complex, gives the corresponding β-substituted products.