Dicarboxylate assisted synthesis of the monoclinic heterometallic tetrathiocyanato bridged copper(II) and mercury(II) coordination polymer {Cu[Hg(SCN)4]}n: Synthesis, structural, vibration, luminescence, EPR studies and DFT calculations

The synthesis of the monoclinic polymorph of {Cu[Hg(SCN)₄]}_n is reported. The compound, as determined by X-ray diffraction of a twinned crystal, consists of mercury and copper atoms linked by μ_1,3-SCN bridges. The crystal packing shows a highly porous infinite 3D structure. Diagnostic resonances for the SCN^- ligand and metal-ligand bonds in the IR, far-IR and Raman spectra are assigned and discussed. The electronic band structure along with density of states (DOS) calculated by the DFT method indicates that the compound is an indirect band gap semiconductor. The DFT calculations show that the observed luminescence of the compound arises mainly from an excited LLCT state with small MLCT contributions (from the copper to unoccupied π^? orbital of the thiocyanate groups). The X-band EPR spectrum of the powdered sample at room temperature reveals an axial signal with anisotropic g factors consistent with the unpaired electron of Cu(II) ion in the d_x²−y² orbital.     

FT-IR spectra, vibrational assignments, and density functional calculations of imidazo[1,2-a]pyridine molecule and its Zn(II) halide complexes

The geometry, frequency, and intensity of the vibrational bands of imidazo[1,2-a]pyridine (which is abbreviated as impy) were obtained by the density functional theory (DFT) calculations with BLYP, B3LYP, and B3PW91 functionals and 6-31G(d) basis set. The optimized geometric bond lengths and bond angles are in good agreement with the available X-ray data. The infrared spectrum of imidazo[1,2-a]pyridine was computed by the DFT method in order to reproduce the vibrational wavenumbers and intensities with an accuracy, which allows reliable vibrational assignments. Total energy distribution and isotopic shifts have been calculated in order to help for the perfect assignment of the vibrational modes. The zinc halide complexes Zn(impy)₂X₂ [X = Cl, Br, and I] have also been synthesized. The compounds were characterized using the elemental analysis, FT-IR spectra, and quantum chemical calculations. The geometry optimization of Zn(impy)₂X₂ yields distorted tetrahedral environment around Zn ion.     

A mixed experimental and theoretical study on chelidamate copper(II) complex with 4-methylpyrimidine

A new chelidamate complex, [Cu(chel)(H₂O)₂(mpd)] (chel = chelidamate; mpd = 4-methylpyrimidine), has been synthesized and characterized through a combination of single crystal X-ray analysis, electron paramagnetic resonance (EPR), ultraviolet-visible (UV-vis), and fourier transform infrared spectroscopy (FT-IR). The complex has six-coordinate distorted octahedral geometry around Cu(II). The theoretical vibrational frequencies and optimized geometric parameters (bond lengths and angles) have been calculated using Density Functional Theory (DFT)/B3LYP and Hartree Fock quantum chemical methods with 6-31G(d, p) basis set by Gaussian 09W software. The EPR spectrum of the compound showed that the paramagnetic center has rhombic symmetry. The EPR studies were carried out using the following unrestricted hybrid density functionals: B3LYP, CAM-B3LYP, HSEH1PBE, WB97XD, MPW1PW91, and BPV86. The UV–vis absorption spectra have been examined in different media and compared with the calculated one using TD-DFT method by applying the polarizable continuum model. Natural bond orbital property of complex has been performed by DFT/B3LYP with 6-31G (d, p) basis set.     

Synthesis,spectroscopy, X-ray crystal structure,and DFT studies on a platinum(II) Schiff-base complex

[PtCl₂(SMe₂)₂] reacts with (N,N′-bis(salicylidene)-1,2-cyclohexanediamine) to give (N,N′-bis(salicylidene)cyclohexane-1,2-diamine)platinum(II). The complex has been characterized by elemental analysis, infrared (IR), UV-Vis, and single-crystal X-ray diffraction. Pt(II) is in a square-planar environment, coordinated by a chelating N₂O₂ donor. Density functional theory (DFT) calculations such as geometry optimization, vibrational frequency, electronic properties, and natural bond orbital (NBO) have been performed for the platinum compound using the OLYP method at TZP(6-311G*) basis set. The optimization calculation shows that the geometry parameters can be reproduced with the OLYP/TZP basis set. Experimental IR frequencies and calculated vibrational frequencies support each other. Time-dependent DFT has been used for absorption wavelengths and results were compared with experimental data. Moreover, NBO analysis has been performed.     

Fourier transform infrared spectrum, vibrational analysis and structural determinations of the trans-bis(glycine)nickel(II) complex by means of the RHF/6-311G and DFT:B3LYP/6-31G and 6-311G methods

The trans-bis(glycine)nickel(II) complex was synthesized, and the Fourier transform infrared spectra in the regions 4000-370 cm(-1) and 700-30 cm(-1) were measured. Band deconvolution analysis and the second derivative of the infrared spectrum were also performed. The determination of the geometrical structure in the trans position of the glycine ligands around Ni(II) for the trans-bis(glycine)nickel(II) complex as well as the vibrational assignment were assisted by RHF/6-311G and by Density Functional Theory calculations, DFT:B3LYP/6-31G and 6-311G basis sets. A full discussion of the framework vibrational modes was done using as criteria the geometry study of distorted structures generated for the vibrational modes. Incidentally, Normal Coordinate Analysis was carried out for the Ni(N)(2)(O)(2) structural fragment. The calculated DFT spectra in the high- and low-energy regions agree with the observed ones.     

Crystal Structure and Spectroscopic Properties of Aquabis(Imidazole-4-Acetato)Copper(II)

Light blue crystals of composition [Cu(ia)₂(H₂O)] (where ia denotes the imidazole-4-acetatoanion) were obtained from aqeous solutions of CuSO₄ and the sodium salt of the ligand. The complex has been characterized by single-crystal X-ray diffraction as well as by vibrational and electronic spectroscopy. The environment around copper(II) ion may described as quasi-square pyramid with carboxylic oxygen and imidazole nitrogen atoms at the corners of the pyramid base and a water molecule at the top. The Cu atom is 0.080(1) Å from the least-squares plane through the four atoms of the pyramid base toward the apical water oxygen atom located 2.365(2) Å from the metal center. The infrared spectrum was interpreted with application of deuterium labeling. The copper d-d, ligand-to-metal charge transfer (LMCT) and ligand - * transitions were assigned in the reflectance spectrum.     

Bioactive Co(II), Ni(II), and Cu(II) Complexes Containing a Tridentate Sulfathiazole-Based (ONN) Schiff Base

New Co(II), Ni(II), and Cu(II) complexes were synthesized with the Schiff base ligand obtained by the condensation of sulfathiazole with salicylaldehyde. Their characterization was performed by elemental analysis, molar conductance, spectroscopic techniques (IR, diffuse reflectance and UV–Vis–NIR), magnetic moments, thermal analysis, and calorimetry (thermogravimetry/derivative thermogravimetry/differential scanning calorimetry), while their morphological and crystal systems were explained on the basis of powder X-ray diffraction results. The IR data indicated that the Schiff base ligand is tridentate coordinated to the metallic ion with two N atoms from azomethine group and thiazole ring and one O atom from phenolic group. The composition of the complexes was found to be of the [ML₂]∙nH₂O (M = Co, n = 1.5 (1); M = Ni, n = 1 (2); M = Cu, n = 4.5 (3)) type, having an octahedral geometry for the Co(II) and Ni(II) complexes and a tetragonally distorted octahedral geometry for the Cu(II) complex. The presence of lattice water molecules was confirmed by thermal analysis. XRD analysis evidenced the polycrystalline nature of the powders, with a monoclinic structure. The unit cell volume of the complexes was found to increase in the order of (2) < (1) < (3). SEM evidenced hard agglomerates with micrometric-range sizes for all the investigated samples (ligand and complexes). EDS analysis showed that the N:S and N:M atomic ratios were close to the theoretical ones (1.5 and 6.0, respectively). The geometric and electronic structures of the Schiff base ligand 4-((2-hydroxybenzylidene) amino)-N-(thiazol-2-yl) benzenesulfonamide (HL) was computationally investigated by the density functional theory (DFT) method. The predictive molecular properties of the chemical reactivity of the HL and Cu(II) complex were determined by a DFT calculation. The Schiff base and its metal complexes were tested against some bacterial strains (Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus, and Bacillus subtilis). The results indicated that the antibacterial activity of all metal complexes is better than that of the Schiff base.     

Synthesis,characterization, density functional theory calculations,and in vitro antibacterial activity of novel transition metal complexes containing an O3-tridentate amoxicillin-based Schiff base: A silver(II) complex as alternative against Pseudomonas aeruginosa resistant to amoxicillin

Transition metal complexes containing an amoxicillin-based Schiff base (H₂L, 3 ) obtained from the condensation of amoxicillin 1 with salicylaldehyde 2 were prepared. Spectroscopic and physicochemical techniques, namely, UV–visible, Fourier-transform infrared spectroscopy, ¹H NMR, electron paramagnetic resonance, transmission electron microscopy, mass spectrometry, magnetic susceptibility, molar conductance, density functional theory (DFT) calculations, together with elemental and thermal analyses were used to characterize the synthesized complexes. Based on these studies, the general formulae [ML(H₂O)₃], where M = Mn 4 , Ni 5 , Zn 6 , and [ML(H₂O)], where M = Cu 7 , Ag 8 , were proposed for the complexes. The amoxicillin-based Schiff base ligand behaved as a dianionic O₃-tridentate chelating agent. DFT studies and magnetic and spectral data revealed octahedral geometries for Mn, Ni, and Zn atoms and distorted tetrahedral geometries for Cu(II) and Ag(II) complexes. Synthesized compounds were tested for antibacterial activity by both agar disk diffusion method and the minimum inhibitory concentration. in vitro bacterial viability revealed that complex 5 had similar antibacterial activity as 1 against Staphylococcus aureus and Staphylococcus epidermidis, whereas Pseudomonas aeruginosa, resistant to amoxicillin, was sensitive to complex 8 . The antibacterial activity of complex 8 could be attributed to its greater catalytic activity as shown by DFT calculations. Toxicity bioassay of the tested compounds showed LC₅₀ values > 1000 ppm, indicating their nontoxicity against brine shrimp nauplii (Artemia salina).     

Unusual co-ordination behaviour of imidazole-4-acetic acid. Synthesis, crystal structure and vibrational studies of one-dimensional co-ordination polymer of zinc(II) with two different ligand forms

This work is devoted to structural and vibrational studies of novel 1D polymeric zinc(II) complex [ZnCl(ia)(Hia)]·H₂O (infinity) [Hia=imidazole-4-acetic acid]. It has been found for the first time that the ia anion is acting as bidentate bridging ligand with N1 and carboxylate oxygen atoms as binding centres. The quasi-tetrahedral coordination polyhedron is completed by one chloride anion and monodentate Hia ligand bonded with zinc(II) cation via carboxylate oxygen atom. The compound crystallise in the triclinic P space group with Z=2. The polymer chains are held together by hydrogen bonding network involving the N---H and carboxylate groups, chloride ions and water molecules. The differences between normal vibrations of two ligand forms present in the complex are discussed on the basis of the density functional calculations (DFT) performed for natural and N-deuterated isotopomers. The assignment of the observed MIR and Raman bands is given in terms of potential energy distribution (PED).     

A Hirshfeld surface analysis,crystal structure,and physicochemical studies of a new Cu(II) complex with the 1,10-phenanthroline ligand

Abstract

The new coordination compound, [Cu(H₂PO₄)₂(C₁₂N₂H₈)H₂O]·2H₂O, was prepared and characterized by physico-chemical studies. In this monomeric complex, the central Cu(II) atom is in a square pyramidal environment and chelated by two nitrogen atoms of 1,10-phenanthroline, two dihydrogeno-monophosphate oxygen atoms and one water oxygen atom. Intermolecular interactions were investigated by Hirshfeld surfaces. The ³¹P NMR spectrum of this paramagnetic complex displays a relatively sharp peak at 2,070?ppm. The vibrational absorption bands were identified by infrared spectroscopy. Electronic properties such as HOMO and LUMO energies were derived.     

A pyrazine-bridged linear pentanuclear copper(II) complex and related tri- and dinuclear complexes showing various coordination structures and magnetic couplings

Sterically bulky pyrazines have been successfully utilized for the preparation of discrete oligo-nuclear TBP (trigonal bipyramidal), SqP (square pyramidal), and Oh (octahedral) copper(II) complexes. We have synthesized a unique linear pentanuclear complex [{Cu(hfac)₂}₅(μ-2-butyl-3-methylpyrazine)₄]. The two terminal copper(II) ions have a SqP structure while the three inner ions have an Oh one. The solvent molecule was incorporated in the clearance of the lattice. From another reaction under harsh conditions, we separated [{Cu(hfac)₂}₃(μ-2-butyl-3-methylpyrazine)₂], which can be regarded as the central moiety of the pentanuclear one. We also prepared a dinuclear complex [{Cu(hfac)₂}₂(μ-tetramethylpyrazine)], in which the pyrazine nitrogen atoms were located at TBP equatorial positions. Single-crystal EPR measurements supported its compressed TBP structure. The exchange coupling was antiferromagnetic with J_TBP–TBP/k_B = −3.6 K. The linear trinuclear [{Cu(hfac)₂}₃(μ-2,3,5-trimethylpyrazine)₂], having two TBP Cu ions with an intervening Oh Cu ion, showed very weak antiferromagnetic coupling. DFT calculations on these compounds indicated that the σ-type orbital overlap between the Cu and N atoms is essential for superexchange interactions.     

A methylenic group binds guanidinoacetic acid to glycine and serine in two novel copper(II) complexes: Synthesis,X-ray structure and spectroscopic characterization

New condensed amino acids were observed in two Cu(II) complexes, both involving guanidinoacetic acid (GAA). The copper(II) complexes, 1 and 2, were synthesized and characterized by X-ray crystallography and infrared spectroscopy. Vibrational assignments were performed with the aid of density functional theory (DFT) calculations. Both complexes present an elongation of the carbon chain of the starting amino acid, GAA. One methylenic group binds GAA to the other amino acid, which can be glycine or serine. Complex 1 presents a new condensed synthetic amino acid, glycine-3-N-methylguanidino acetic acid (Gly-mGAA) that is the result/product of the reaction between GAA and glycine, with an addition of one carbon in the chain. In complex 2, a similar ligand to Gly-mGAA was observed, but in this case it is a product of the reaction between GAA and serine, that is, serine-3-N-methylguanidino acetic acid (Ser-mGAA). Gly-mGAA and Ser-mGAA coordinate to Cu(II) through two nitrogen atoms and two oxygen atoms. In addition, we attempt to propose the mechanism for formation of Ser-mGAA and Gly-mGAA in two steps. The first one involves a deamidination reaction between two GAA species, producing the intermediate N,N′-guanidinodiacetic acid. The second step involves a decarboxylation process between GAA and Ser or Gly.     

Synthesis and vibrational study of platinum(II) and palladium(II) complexes of glyoxilic acid oxime

New platinum(II) and palladium(II) complexes of glyoxilic acid oxime (gao) have been prepared and characterised by infrared (4000–150 cm⁻¹) and Raman (4000–200 cm⁻¹) spectra. The gao acts as bidentate ligand bonding through the oxime nitrogen and carboxyl oxygen atoms to form neutral bis-chelate square-planar complexes. The lowest energy conformer of the gao ligand (ectt) was selected among 16 theoretically possible conformers on the basis of ab initio calculations at HF/3-21G*, HF/6-31G* and HF/6-311** levels of the theory from which structural parameters and conformational stabilities have been obtained. A complete vibrational assignment of the gao was performed for the lowest energy ectt conformer on the basis of ab initio optimised parameters and normal coordinate analysis calculations (PED). NCA calculations of the complexes studied were also performed.     

Deamination process in the formation of a copper(II) complex with glutamic acid and a new ligand derived from guanidinoacetic acid: Synthesis,characterization, and molecular modeling studies

A deamination process was observed after copper(II) complexation reaction with guanidinoacetic (Gaa) and glutamic acids (Glu), forming the binuclear copper(II) complex K₂Cu₂C₁₆H₂₃N₇O₁₂ · 1/2H₂O (1), which was characterized by elemental analysis (CHN), spectroscopy methods (IR and EPR), powder X-ray diffraction, thermogravimetric analysis (TGA), and mass spectrometry. A new ligand, namely biguanide-1,5-diethanoate (Bge) (C₆H₉N₅O₄), was formed during complexation, probably due to the reaction between two Gaa species and the consequent release of a significant amount of ammonia, thus, characterizing the deamination process. In complex 1, Bge behaved as a tetradentated ligand, using its oxygen and nitrogen atoms as coordinating sites to both Cu(II) ions. In addition, Glu has coordinated to Cu(II) through its α-N and O atoms. Theoretical calculations of the cis–cis, cis–trans, and trans–trans isomers of 1, considering three prototropic forms of the Bge ligand, were carried out using semi-empirical quantum mechanics (PM3/d). DFT (B3LYP and B3P86) calculations of complex 1, in which a hydrogen atom replaced the side chain of Glu, were also carried out using the 6-31G(d) basis set and the LanL2DZ effective core potential for the transition metal. Based on experimental and theoretical data, we concluded that the trans–trans isomer of the binuclear copper(II) complex 1 should be the most stable, although the occurrence of other isomers, even if in minor quantities, should not be disregarded.     

SYNTHESIS AND CRYSTAL STRUCTURE OF A BINUCLEAR COPPER (II) COMPLEX BRIDGED BY OXAMIDATO,Cu2(μ-CIS-OXPN)(PHEN)(NO3)2

Abstract

The complex [Cu₂(μ-cis-oxpn)(phen)(NO₃)₂], where oxpn = N,N′ -bis(3-aminopropyl) oxamidato and phen = 1,10-phenanthroline, has been synthesized and its crystal structure determined by X-ray methods. The structure consists of binuclear copper (II) molecules in which the Cu(II) atoms are bridged by oxamidato group in the cis conformation, the Cu—Cu distance being 5.205(10) Å. The coordination geometry around Cu (II) atoms is square pyramidal; the apex is occupied by a more weakly bonded O atom from a nitrate group. Electron delocalization is observed in the bridging oxamide moiety. The co-planarity of bridge ligand and basal plane around Cu (II) atoms may benefit spin super-exchange between two Cu (II) atoms. IR spectra of the binuclear complex are discussed.     

Synthesis and Crystal Structure of a Novel Polymeric Thiocyanato-Bridged Heteronuclear Complex of Copper(II) and Cadmium(II)

The title polymeric complex of Cu(II) and Cd(II) bridged by thiocyanate, Cu(en)₂[Cd(SCN)₃]₂, has been prepared and its structure determined by X-ray diffraction (XRD) methods. The crystal structure reveals that the Cu(II) atom is in an elongated octahedral coordination formed by two SCN^– anions and two en molecules. The Cd(II) atom is in a distorted octahedral coordination formed by six bridging SCN^– anions. Two different bridging thiocyanate anions exist in the complex. Both 1,1--SCN^– and 1,3--SCN^– anion act a role of bridge ligand and link Cu(II), Cd(II) atoms, and adjacent Cd(II). Cd(II) atoms form the three-dimensional (3-D) network polymeric structure. The IR and UV-Vis spectra have also been investigated.     

Synthesis, structure, UV-Vis-IR spectra, magnetism and theoretical studies on Cu[(2-aminomethyl)pyridine](thiocyanate)2 and comparisons with an analogous Cu complex

The title complex was synthesized under self-assembly conditions using Cu(acetate)₂·H₂O, 2-amp (= 2-aminomethylpyridine) and KSCN, and was characterized by IR, elemental analysis and single crystal structural analysis, and its spectral and RT magnetic properties were investigated. The asymmetric unit consists of a square planar Cu(II) center, with two ligand N atoms and two anionic Ns forming the square plane. In the unit cell, the monomeric complex assembles into 2-D layers through very weak non-bonded interactions between anionic S and Cu²⁺. Further, the structure was satisfactorily modeled by calculations based on Density Functional Theory (DFT), and the UV-Vis and IR spectra are analyzed in depth with the help of Time Dependent DFT (TDDFT). The results indicate that the absorption maxima are at relatively high energy and are mainly assigned to π → π^∗ transitions (in pyridine), with a fair contribution of metal to ligand charge transfer (MLCT) and ligand to ligand charge transfer (LLCT) transitions. All the low lying transitions are categorized as mixed MLCT/LLCT. A very weak but broad band in the higher wavelength region has been detected and identified as a d-d transition band. Also, it has been found that when the ligand ratio is modified, the formation of Cu(2-amp)₂(SCN)₂ takes place under the same self-assembly conditions, whose structure only has been recently reported. Structural, spectral and theoretical comparisons are presented for both complexes.     

Synthesis,characterization, crystal structure and thermal analysis of a copper(II) mononuclear compound with 2,6- bis (3,5-dimethyl- N -pyrazolyl)pyridine (bdmpp) and selenocyanate as ligands

A single crystal of the copper(II) compound, [Cu(bdmpp)(SeCN)₂], 2, was obtained and its crystal structure was determined by X-ray diffraction methods. The complex was characterized by elemental, thermal and FTIR analysis. The FTIR analysis of the complex clearly shows the SeCN peaks at 2096 and 2061?cm^?1 which did not exist in the free organic ligand (bdmpp). X-ray analysis showed that 2 crystallized in the monoclinic space group P2₁/c. Cu(II) has a distorted trigonal bipyramidal coordination involving three N atoms from the ligand and two N atoms from the selenocyanate group.     

Synthesis and Crystal Structures of Nickel(II) and Copper(II) Complexes of Meso-3,6,6,9-Tetramethyl-4,8-Diazaundecane-2,10-Dione Dioxime

The nickel(II) and copper(II) complexes of meso-3,6,6,9-tetramethyl-4,8-diazaundecane-2,10-dione dioxime (meso-HM-PAO) have an intramolecular hydrogen bond between cis oxime groups. [Cu(meso-HM-PAO-H)(H₂O)](NCS) crystallizes in space group P2₁/n with a = 7.692(1), b = 12.028(2), c=20.235(3) Å, β=93.03(1)°, Z = 4 and Dc=1.46 g/cm³. The final R value for this complex was 0.034 for 2223 observed reflections with I ≥ 2.5σ (I). The Cu(II) coordination is a distorted square pyramid. The Cu(II) ion is five-coorinated with the diazadioxime N atoms equatorial and water O atom axial. The Cu(II) is 0.12 Å from the equatorial plane towards the hydrate. The equatorial Cu-N distances span a narrow range, 1.953(3)-1.999(3) Å. The axial Cu-O distance is 2.314(3) Å. The thiocyanate group is almost linear. The intramolecular O ?O hydrogen bond length is 2.479(4) Å. [Ni(meso-HM-PAO-H)](ClO₄) crystallizes in space group P2₁/c with a = 14.774(3), b = 12.752(3), c = 20.035(4) Å, β = 92.94(3)°, Z = 8 and Dc = 1.51 g/cm³. The final R value for the complex was 0.053 for 4794 observed reflections with F ≥ 4σ (F). The coordination about Ni(II) is a slightly distorted square plane. The Ni(II) ion is 0.0673(7) Å from the best plane of the four donor nitrogen atoms away from the perchlorate ion. The Ni-N distances span a narrow range 1.863(4)-1.927(4) Å. There are two molecules per asymmetrical unit resulting in eight molecules being packed in an unit cell; they are bound together by van der Waals interactions. The O-H ?O bonds of these complexes give characteristic infrared absorptions as well as chemical shift of the ¹H NMR signal (Ni complex).     

Synthesis,spectroscopic characterization,X-ray structure and DFT calculations of copper(II) complex with 2-(2-pyridyl)benzimidazole

The reaction of copper(II) nitrate trihydrate and 2-(2-pyridyl)benzimidazole (pybzim) leads to [Cu(pybzim)₂(NO₃)](NO₃). The compound has been studied by IR, UV–Vis spectroscopy and X-ray crystallography. The electronic structure of the [Cu(pybzim)₂(NO₃)]⁺ cation has been calculated with the density functional theory (DFT) method. The spin-allowed doublet–doublet electronic transitions of [Cu(pybzim)₂(NO₃)]⁺ have been calculated with the time-dependent DFT method, and the UV–Vis spectrum of the title compound has been discussed on this basis.