Chemical Synthesis of Oligonucleotides Containing N6-Methyladenine Residues in the GATC Site

To investigate by NMR the effects of adenine methylation, a set of oligodeoxynucleotides has been synthesized by phosphotriester or phosphoramidite procedures on silica-gel support. The preparation of fully protected 2′-deoxy-N⁶-methyladenosine 3′-phosphate 4 and (2′-deoxy-N⁶-methyladenosin-3′-O-yl)(methoxy)morpholinophosphine 5 is described. The large-scale chemical synthesis, purification by HPLC, and characterization by MS of these molecules containing N⁶-methyladenine is reported.     

Evaluation of methods for determining the refraction correction for light-scattering photometers

Recent literature reports from three laboratories have treated the refraction correction for the Sofica and a noncommercial light scattering photometer. Our re-evaluation of the data contained in these reports, as well as our experiments, indicate that the usually cited n² refraction correction has not been unquestionably established for these instruments. In some cases, imprecise experimental techniques have been used to support this particular form of the correction. In addition, we find the optical system of the Sofica instrument results in the detector seeing vertically past the horizontal edge of the illuminated volume in violation of a basic assumption in the deduction of the n² correction. Our experiments, as well as our interpretation of recent literature data, support an exponent of less than 2.0 for the Sofica apparatus, which is consistent with an instrument whose detector views outside the illuminated volume. However, the experimental methods available to evaluate the exponent lack the desired precision.     

Charge reversal of the conjugate base of formamide

Charge reversal collisional activation mass spectremetry of negative ions has been used in conjunction with positive ion collisional activation to investigate several isomeric [H₂, C, N, O]⁺ ions. Generation of m/z 44 ions from formamide, acetamide, JV-methylformamide, acetaldoxime and by charge reversal of the [M–1]^? ion formed from formamide yields several different isomeric structures. Charge reversal of the conjugate base of formamide appears to yield a mixture of singlet and triplet H₂NC?O⁺ ions; experiments with deuterium-labeled compounds have been used to support this. Ab initio molecular orbital calculations indicate that the triplet ion is a stable structure, existing in a potential minimum 390.6 kJ mol^?1 above the ground state singlet.     

Insertion of CO2 Mediated by a (Xantphos)NiI–Alkyl Species

The incorporation of CO₂ into organometallic and organic molecules represents a sustainable way to prepare carboxylates. The mechanism of reductive carboxylation of alkyl halides has been proposed to proceed through the reduction of Ni^II to Ni^I by either Zn or Mn, followed by CO₂ insertion into Ni^I‐alkyl species. No experimental evidence has been previously established to support the two proposed steps. Demonstrated herein is that the direct reduction of (tBu‐Xantphos)Ni^IIBr₂ by Zn affords Ni^I species. (tBu‐Xantphos)Ni^I‐Me and (tBu‐Xantphos)Ni^I‐Et complexes undergo fast insertion of CO₂ at 22 °C. The substantially faster rate, relative to that of Ni^II complexes, serves as the long‐sought‐after experimental support for the proposed mechanisms of Ni‐catalyzed carboxylation reactions.     

Kinetics of the decay of nitroxyl radicals during polymerization of a complex of acrylamide with bismuth nitrate

Kinetics of the decay of nitroxyl radicals during spontaneous polymerization of complexes of acrylamide (AAm) with Bi^III nitrate has been studied by ESR. From a comparison of the experimental and calculated kinetic curves, the initiation rate constant of polymerization has been determined. The approach proposed is suitable for determining the main kinetic characteristics of other polymerizable nonparamagnetic AAm complexes with metal nitrates.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1572–1575, September, 1994.This work was carried out with the financial support of the Russian Foundation for Basic Research (Project No93-03-4162).     

Synthesis of the heptapeptide of the cyclopeptide moiety of polymixin B

Conclusions The synthesis of the heptapeptideN -BOC-N -pelargonyl-L-lysyl-N -Z-L-lysyl-D-phenylalanyl-L-leucyl-N -Z-L-lysyl-N -Z-L-lysyl-L-threonine, a linear analog of the cyclopeptide part of the antibiotic polymixin B, has been effected (yield 63%). The possibility of using this method for the synthesis of peptides on a polymer support without protecting the hydroxyl group of threonine has been shown.Khimiya Prirodnykh Soedinenii, Vol. 6, No. 3, pp. 359–361, 1970     

Ab initio energies and tunneling lifetimes of the doubly charged AH2+ (A = Mg—Ar) diatomics

Potential energy curves for the ground and low-lying excited states of the AH²⁺ (A = Mg—Ar) dications have been calculated using high-level ab initio methods with large atomic orbital basis sets. Quasi-bound potential energy curves with local minima and deprotonation barriers have been found for most of the dications studied. The energies, tunneling lifetimes, and widths of the quasi-bound states have been calculated by numerical solution of the radial Schrodinger equation using the Numeov method. All these dications except ArH²⁺ have low-lying states which support quasi-bound vibrational states. The ArH²⁺ dication has a ²∏_i potential energy curve with a minimum so shallow that it does not support any quasi-bound vibrational states. Results of our calculations are compared with previous ab initio calculations and available experimental data. © 1995 John Wiley & Sons, Inc.     

Effect of valence state of vanadium on stereoblock polymerization of methyl methacrylate with VOCl3–AlEt2Br catalyst system

The polymerization of methyl methacrylate with the VOCL₃–ALEt₂Br catalyst system in n-hexane has been studied. The first-order dependence of rate of polymerization on catalyst and monomer concentrations, activation energy of 6.67 kcal/mole, and NMR spectra of polymer lend support to a coordinate anionic mechanism of polymerization. It has been shown that the vanadium in V⁺² oxidation state is less active than V⁺³ oxidation state of active complex.     

Microwave-Assisted Efficient Methylation of Alkyl and Arenesulfonamides with Trimethylsulfoxonium Iodide and KOH

Abstract

A solvent-free synthesis of N-methyl and N,N-dimethylsulfonamides has been achieved by treating the primary and secondary sulfonamides with Me₃S⁺OI^? and KOH under microwave irradiation on alumina support.     

Excess Volume of Mixing of 1:1 Electrolyte Solutions at 298.15 K in the Aquo-1,4-Dioxane Mixed-Solvent System

Excess volumes of mixing for six possible binary combinations of solutions of NaCl, KCl, NaBr and KBr have been determined at constant ionic strengths of 1.000 and 2.000 mol-kg^{− 1} at 298.15 K using a dilatometer in the water + 1,4-dioxane mixed-solvent system. Pitzer’s ion-interaction model has been utilized to obtain binary and triplet interaction parameters, i.e., θ^V and ψ^V. The data were also analyzed by the Friedman Model and it is suggested that interactions between solvated ions are dictated not only by coulombic interactions but also by appreciable asymmetric effects. The data are dependent on the nature of the common ion and do not support Young’s cross-square rule. The deviation from the cross-square rule is considered to arise from preferential solvation of the ions and ion clusters in the mixed-solvent system as reflected by the appreciable contribution of triplet interactions.     

A calorimetric study of the acid dissociation of the conjugate acids of poly(N-vinylimidazole) and polyallylamine

Thermodynamic parameters for acid dissociation of the conjugate acids of poly(N-vinylimidazole) and polyallylamine have been determined in the presence of sodium chloride and sodium nitrate. Even though the plots of ΔG ⁰ against the degree of dissociation, α, are highly dependent on the added salt concentration levels, the concentration effect has never been observed for the corresponding ΔH ⁰ versus α plots. The effect on the ΔG ⁰ versus α plots has been attributed to the entropy change of the counterions between a polyelectrolyte phase and a bulk solution phase. The α dependency of ΔH ⁰ is affected remarkably by the kinds of cationic polymers and counter-anions. Each ΔH ⁰ value at completely neutralized conditions is quite close to the corresponding ΔH ⁰ value of the monomer analog. The difference in the ΔH ⁰ values at fully charged conditions has been explained by the heats due to The ion-pair formation of chloride anion to the conjugate acids of poly(N-vinylimidazole) and polyallylamine has been supported by ³⁵Cl NMR measurement. It has also been suggested that chloride anions bind the basic polymer molecules even at fully neutralized conditions. Received: 2 June 1999/Accepted in revised form: 19 July 1999     

Preparation,characterization and antifungal properties of nickel(II) complexes of tridentate ONS ligands derived from N-methyl-S-methyldithiocarbazate and the X-ray crystal structure of the [Ni(ONMeS)CN]·H2O complex

Nickel(II) complexes of general empirical formula, NiLX·nH₂O (L = deprotonated form of the Schiff base formed by condensation of N-methyl-S-methyldithiocarbazate with 2-hydroxybenzaldehyde or 5-bromo-2-hydroxybenzaldehyde; X = Cl^–, Br^–, NCS^–, AcO^– or CN^–; n = 0, 1) have been prepared and characterized by a variety of physico-chemical techniques. Magnetic and spectroscopic data support a square-planar structure for these complexes. The crystal structure of the [Ni(ONMeS)CN]·H₂O complex (ONMeS = anionic form of the 2-hydroxybenzaldehyde Schiff base of N-methyl-S-methyldithiocarbazate) has been determined by X-ray diffraction. The complex has a distorted square-planar structure in which the Schiff base is coordinated to the nickel(II) ion as a uninegatively charged anion coordinating via the phenolic oxygen atom, the azomethine nitrogen atom and the thione sulfur atom. The fourth coordination position is occupied by a cayano ligand. The antifungal properties of the Schiff bases and their nickel(II) complexes were studied against three plant pathogenic fungi. The ligands display moderate fungitoxicities against these organisms but their nickel(II) complexes are less active than the free ligands.     

Platinum(IV) complexes of reducing sugars in an alkaline medium and their resistance to reaction with N-bromosuccinimide. A kinetic study

Spectrophotometric studies support the formation of { Pt^IV–S} (where S = glucose, galactose and fructose) complexes in an alkaline medium. The resistance of these complexes to reaction with N-bromosuccinimide (NBS) has been observed. The kinetic data also support the formation of { Pt^IV –S} complexes.     

Kinetics of the oxidation of nitric oxide by chlorine and oxygen in nonaqueous media

The kinetics of the reaction between nitric oxide and chlorine have been investigated in both carbon tetrachloride and glacial acetic acid. The nitric oxide-oxygen reaction has been investigated in carbon tetrachloride. The appearance of product, NOCl or NO₂, was monitored spectrophotometrically at a wavelength of 475 nm for NOCl and 343 nm for NO₂. These measurements were performed using an Amino-Morrow stopped-flow apparatus equipped with a Beckman D U monochromator. The data for both the NO? Cl₂ and NO? O₂ systems could be fitted to the third-order integrated equation and the calculated rate constants were 2.75 × 10³ M^?2 s^?1 and 2.79 × 10⁶ M² s^?1, respectively, at 25.1°C. There was a noted increase in rate constants on changing the solvent from carbon tetrachloride to acetic acid. The likelihood of a termolecular encounter is inherent in the mechanism, however, no real evidence to substantiate either a direct termolecular or a series of two bimolecular steps has been obtained, although a ?7 kcal for ΔH⁰ would support the latter.     

Kinetics and mechanism of exchange of cyanide in hexacyanoferrate(II) by N-methylpyrazinium ion in the presence of mercury(II) as a catalyst

The kinetics of the mercury(II) catalysed ligand exchange of the hexacyanoferrate(II) complex with the N-methylpyrazinium ion (Mpz⁺) in a potassium hydrogen phthalate buffer medium has been investigated at 25.0 ± 0.1 °C, pH = 5.0 ± 0.02 and ionic strength, I = 0.1 M (KNO₃). The reaction was followed spectrophotometrically in the aqueous medium by measuring the increase in absorbance of the intense blue complex [Fe(CN)₅Mpz]^2– at its _max 655 nm. The effect of pH, and the concentrations of [Fe(CN)₆ ^4–] and Mpz⁺ on the reaction rate have been studied and analysed. The varying catalytic activity of mercury(II) as a function of concentration has also been explained. The kinetic data suggest that substitution follows an interchange dissociative (I _d) mechanism and occurs via formation of a solvent-bound intermediate. The effects of the dielectric constant of the medium on the reaction rates have been used to visualize the formation of a polar activated complex and an interchange dissociative mechanism for the reaction. A mechanism has been proposed in order to interpret the kinetic data. Kinetic evidence is reported for the displacement of CN^– by Mpz⁺ in [Fe(CN)₆ ^4–]. Activation parameters for the catalysed and uncatalysed reaction have been evaluated, and lend further support to the proposed mechanism.     

Influence of (1,3‐phenylene)bis(3‐methyl‐1‐phenyl pentylidene)dilithium initiator concentration on the modality of polybutadiene

The strong influence of (1,3‐phenylene)bis(3‐methyl‐1‐phenyl pentylidene)dilithium initiator (DLI) concentration on the modality of polybutadiene (PBd) in the presence of lithium s‐butoxide (s‐BuOLi) in benzene, at room temperature, has been studied. The quality of DLI has been evaluated by gas chromatography‐mass spectrometry (GC‐MS) and ¹H NMR. Keeping s‐BuOLi/C‐Li ratio (R) close to unity, at relatively high DLI concentrations (C > 7 × 10^?4 M), monomodal high 1,4‐PBds with polydispersity index less than 1.07 were obtained, whereas bimodal ones at lower concentrations (C < 6 × 10^?4 M). The effect of C‐Li concentration on the modality of PBd has been evaluated using size exclusion chromatography on samples taken during and at the end of the polymerization. Viscosity observations have also been used to further support the results. The bimodality of PBd has been attributed to partially terminated difunctional species because of the inevitable presence of protic impurities in the polymerization solution, although high vacuum technique was used, which becomes more significant at low initiator concentrations. Moreover, the strong influence of s‐BuOLi on the microstructure of PBd has been demonstrated by ¹H NMR. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Topological and thermodynamic investigations of molecular interactions of aniline and o-toluidine with chloroform

Molar excess volumes, V^E, molar excess enthalpies, H^E, and speeds of sound data, u, of chloroform (i) + aniline or o-toluidine (j) binary mixtures have been measured as a function of composition at 308.15 K. Isentropic compressibility changes of mixing, have been determined by employing speed of sound data. Topological investigations of V^E data reveals that aniline, chloroform and o-toluidine are associated entities and these (i + j) mixtures contain a 1:1 molecular complex. The IR studies lend further support to the nature and extent of interaction for the proposed molecular entity in the mixtures. H^E and values have also been calculated by employing Moelwyn-Huggins concept [Polymer 12 (1971) 387] taking topology of the constituents of the mixtures. It has been observed that calculated H^E and values compare well with their corresponding experimental values. The observed V^E, H^E and data have also been analyzed in terms of Flory theory.     

Construction of frustrated Lewis pair from nitride and phosphine for the activation and cleavage of molecular hydrogen

Activation and cleavage of molecular hydrogen (H₂) to proton and hydride is an important task for several reasons, especially as a reagent in hydrogenation. In this scenario, with the support of density-functional theory methods, a novel strategy has been devised for the conversion of coordinated nitride into ammonia using molecular hydrogen in the presence of tri-tert-butylphosphine (P^tBu₃). The proposed methodology is based on the formation of frustrated Lewis pair (FLP) from [Os^VI(tpy)(Cl)₂(N)]⁺ (tpy = 2,2′:6′,2′′-terpyridine ) and P^tBu₃ followed by reaction with molecular hydrogen to form an FLP–H₂ adduct. The FLP–H₂ adduct can further undergo H–H bond cleavage heterolytically to produce proton and hydride which can be eventually used for the functionalization of coordinated nitride to ammonia. The calculated energy profile comprising all possible intermediates and transition-state molecules suggests that the proposed reaction pathway is energetically viable at elevated temperatures.     

Kinetics and Mechanism of the Ligand Substitution Reaction of the Di-<Emphasis Type="Italic">μ</Emphasis>-hydroxobis(bipyridyl)dipalladium(II) Ion with some Bio-relevant Ligands

The interaction of di-μ-hydroxobis(bipyridyl)dipalladium(II) with the selected bio-relevant ligands: thioglycolic acid (HL¹), glutathione(HL²) and DL-penicillamine(HL³) has been studied spectrophotometrically in aqueous medium as a function of complex and ligand concentrations, pH, and temperature at constant ionic strength. Two consecutive reaction steps are observed: the first step is dependent on the incoming ligand concentration and the second step which is independent, is assigned to ring closure. The activation parameters, conductivity data and IR data obtained also support the proposed mechanism.     

Nickel(II) and copper(II) complexes of ONS ligands formed from 2-hydroxyacetophenone and S-alkyldithiocarbazates and the X-ray crystal structure of the [Ni(Ap-SMe)py] complex (Ap-SMe = anion of the 2-hydroxyacetophenone Schiff base of S-methyl-dithiocarbazate)

Summary New nickel(II) and copper(II) complexes of general formulae [M(Ap-SR)] and [Ap-SR)B] (Ap-SR = dianionic forms of the Schiff bases of 2-hydroxyacetophenone and S-alkyl esters of dithiocarbazic acid; M = Ni^II or Cu^II; R = Me or CH₂Ph; B = py, phen or dipy have been synthesized and characterized by a variety of physicochemical techniques. Magnetic and spectroscopic data support an oxygen-bridged binuclear structure for the [M(Ap-SR)] complexes. The [M(Ap-SR)py] complexes are four-coordinate and square planar, whereas the [M(Ap-SR)B] complexes (B = phen or dipy) are five-coordinate and probably trigonal bipyramidal. The [Cu(Ap-SR)B] complexes (B = py, phen or dipy) obey the Curie-Weiss law over the 298-93 K range.The structure of the [Ni(Ap-SMe)py] complex has been determined by X-ray crystallography. It has an approximately square-planar structure in which the doubly-deprotonated Schiff base is coordinated to the Ni^II ion via the azomethine N atom, the phenolic O atom and the thiolato S atom. The fourth coordination position around the Ni^II ion is occupied by the N of the pyridine ligand.