Dynamics in physisorbed monolayers of 5-alkoxy-isophthalic acid derivatives at the liquid/solid interface investigated by scanning tunneling microscopy

Monolayers of isophthalic acid derivatives at the liquid/solid interface have been studied with scanning tunneling microscopy (STM). We have investigated the dynamics related to the phenomenon of solvent co-deposition, which was previously observed by our research group when using octan-1-ol or undecan-1-ol as solvents for 5-alkoxy-isophthalic acid derivatives. This solvent co-deposition has now been visualized in real-time (two frames per second) for the first time. Dynamics of individual molecules were investigated in mixtures of semi-fluorinated molecules with video-STM. The specific contrast arising from fluorine atoms in STM images allows us to use this functionality as a probe to analyze the data obtained for the mixtures under investigation. Upon imaging the same region of a monolayer for a period of time we observed that non-fluorinated molecules progressively substitute the fluorinated molecules. These findings illustrate the metastable equilibrium that exists at the liquid/solid interface, between the physisorbed molecules and the supernatant solution.     

Hydrogen-bonding versus van der Waals interactions in self-assembled monolayers of substituted isophthalic acids

Self-assembled monolayers of a series of isophthalic acids (5-octadecyloxyisophthalic acid, 5-decyloxyisophthalic acid, 5-hexyloxyisophthalic acid, and 5-pentyloxyisophthalic acid) formed on highly ordered pyrolytic graphite (HOPG) at the solid-liquid interface were studied using scanning tunneling microscopy (STM). Although these molecules have the same dicarboxyl headgroup, their hydrocarbon tails are of different lengths. Hydrogen-bonding between headgroups and van der Waals interactions between the hydrocarbon tails control the final morphology of the monolayer. The STM images show that both van der Waals interactions (vdWs) and hydrogen-bonding (H-B) compete to control the structure, but the final structure of the monolayer is determined by balance between the two interactions.     

枝状分子表面组装结构的形成与结构转变

本文是对近期有关枝状分子在石墨表面吸附组装研究的综述.利用扫描隧道显微技术,系统研究了5-甲氧基间苯二酸类枝状分子在石墨表面组装结构的形成及结构转变,发现虽然该类枝状分子大都可以在石墨表面自发有序组装,但是最终形成的组装结构不仅与分子本身结构例如烷基链的数目有关,与分子浓度有关,还与所用溶剂有关.分子浓度和溶剂的变化,影响组装体系内的相互作用力如分子与基底间的作用力、分子间氢键的作用力等,影响分子迁移和结构转变的动力学过程,从而影响枝状分子组装的最终结构.研究揭示了特定体系中枝状分子组装结构与分子浓度、所用溶剂的定量和定性关系.研究结果有助于认识和掌握枝状分子组装规律,进而可以通过改变相关技术参数,调控得到不同的枝状分子表面组装体,为实现可控构筑分子表面组装结构提供了新的思路.     

The Story Behind the Link between Molecular Chirality and Crystal Shape

Here we describe the story behind the link between molecular chirality and macroscopic phenomena, the latter being a probe for the direct assignment of absolute configuration of chiral molecules. First, a brief tour of the history of molecular stereochemistry, starting with the classic experiment reported by Pasteur in 1848 on the separation of enantiomorphous crystals of a salt of tartaric acid, and his conclusion that the molecules of life are chiral of single-handedness. With time, this study raised, inter alia, two fundamental questions: the absolute configuration of chiral molecules and how a molecule of given configuration shapes the enantiomorphous morphology of its crystal. As for the first question, following the beginning of crystal structure determination by X-ray diffraction in 1912, it took almost 40 years before Bijvoet assigned molecular chirality through the esoteric method involving anomalous X-ray scattering. We have been able to address and link both questions through ‘everyday concepts of left and right’ (in the words of Jack Dunitz) by the use of ‘tailor-made’ auxiliaries. By such means, it proved possible to reveal, through morphology, etch patterns, epitaxy and symmetry reduction of both chiral and, paradoxically, centrosymmetric crystals, the basic chiral symmetry of the molecules of life, the α-amino acids and sugars.     

Crystalline Phase Separation of Racemic and Nonracemic Zwitterionic α‐Amino Acid Amphiphiles in a Phospholipid Environment at the Air/Water Interface: A Grazing‐Incidence X‐Ray Diffraction Study

A grazing‐incidence X‐ray‐diffraction (GIXD) study of the self‐assembly, on water, of nonracemic γ‐stearyl glutamic acid (pure or as a mixture with racemic or (S)‐1,2‐dipalmitoyl‐glycero‐3‐phosphoethanolamine (DPPE)) demonstrated a phase separation of the α‐amino acid amphiphile into racemic and enantiomorphous two‐dimensional crystallites within the phospholipid domains. The packing arrangements of the two α‐amino acid crystalline phases were identical to those found in the absence of DPPE and have been determined, at almost atomic resolution, by X‐ray structure‐factor calculations. By contrast, racemic and nonracemic N^ε‐stearoyllysine spontaneously segregated into two‐dimensional enantiomorphous domains within the DPPE environment that induced a change in the tilt direction of the hydrocarbon chains of the α‐amino acid molecules. Phase separation of nonracemic amphiphiles, originating from preferred lateral homochiral or heterochiral intermolecular interactions, is in agreement with the formation of enantiomerically pure or enriched homochiral oligopeptides in overrepresented amounts in the polycondensation of activated nonracemic amphiphilic α‐amino acids on plain water or within phospholipid monolayers.     

Observation of hierarchical chiral structures in 8-nitrospiropyran monolayers

The adsorption and self-organization of racemic mixture of 8-nitrospiropyran (SP8) molecules on Au(111) surfaces was studied by scanning tunneling microscopy (STM) in ultrahigh vacuum (UHV). The SP8 enantiomers, in spite of their low-symmetric and nonplanar molecular structures, formed well-ordered monolayers on Au(111). In the monolayers, we found two types of enantiomorphous, i.e., mirror-imaged, 2D chiral domains, denoted as lambda and delta phases. Both phases consist of periodically packed chiral quatrefoils. In the lambda domain, the quatrefoils are counterclockwise folded, while in the delta domain, the quatrefoils are clockwise folded. High-resolution STM images revealed that each chiral quatrefoil contains four heterochiral dimers and that each dimer is composed of two antiparallelly packed homochiral SP8 molecules. Therefore both of the two mirror-imaged 2D chiral structures are not chirally pure but racemic 2D crystals. A domain boundary, which serves as the glide reflection line between a lambda domain and a delta domain, was also observed along the [11] direction of the Au(111) substrate.     

Adsorption and self-assembly of aromatic carboxylic acids on Au/electrolyte interfaces

The adsorption and self-assembly of benzoic acid (BA), isophthalic acid (IA), and trimesic acid (TMA) on Au(111) single crystals and on Au(111-25 nm) quasi-single crystalline film electrodes have been investigated in 0.1 M HClO₄ by combining in situ surface-enhanced infrared reflection absorption spectroscopy (SEIRAS) and scanning tunneling microscopy (STM) with cyclic voltammetry. All three acids are physisorbed on the electrode surface in a planar orientation at negative charge densities. Excursion to positive charge densities (or more positive potentials) causes an orientation change from planar to perpendicular. Chemisorbed structures are formed through the coordination of a deprotonated carboxyl group to the positively charged electrode surface. The three acid molecules assemble in different ordered patterns, which are controlled by π-stacking (BA) or intermolecular hydrogen bonds between COOH groups (IA, TMA). A detailed analysis of the potential and time dependencies of the ν_(C=O), ν_s(OCO), and ν_(C–OH) vibration modes shows that the strength of lateral interactions increases upon chemisorption with an increasing number of COOH groups in the sequence of BA<IA<TMA. The vibration bands shift to higher wavenumbers due to dipole–dipole coupling, Stark tuning, and electron back donation from the electrode to COO⁻. In addition, an “indirect” electron donation to the COOH groups takes place via the conjugated molecular skeleton superimposed on the intermolecular hydrogen bonding. Figure In-situ STM images of the physisorbed and chemisorbed adlayers of isophthalic acid on Au(111)-(1 × 1), the corresponding cyclic voltammogram and principle of the ATR-SEIRAS set-up     

Design and synthesis of coordination networks containing amide,pyridine and carboxylate functionalities

The reactions of bis(pyridinecarboxamido)alkane with copper(II) in the presence of mono or dicarboxylic acids resulted in discrete species, one-dimensional and two-dimensional networks. The carboxylates considered for this study include m-nitrobenzoic acid, isophthalic acid and succinic acid. In the presence of m-nitrobenzoic acid the ligands with Cu(II) form 1D coordination networks which include m-nitrobenzoic acid and water molecules as guests. The use of isophthalic acid resulted in discrete species while the use of succinic acid resulted in a two-dimensional layer containing rectangular grids of dimension 9.7 × 16.5 Å². The 2D layers in this complex exhibit inclined 2-fold interpenetration. Further, all these coordination networks are assembled via hydrogen bonding interactions between the amides and water molecules. The Cu(II) centre exhibits a unique octahedral coordination geometry, for the complexes reported here, as it coordinates with two each of pyridine moieties, water molecules and carboxylates.     

Effects of structure on properties of some new aromatic-aliphatic polybenzimidazoles

Polybenzimidazoles were prepared in poly(phosphoric acid) from isophthalic, m- and p-phenylene diacetic, succinic, adipic, suberic, and sebacic acids and 3,3′-diaminobenzidine, 3,3′,4,4′-tetraaminodiphenyl ether and 3,3′,4,4′-tetraaminodiphenylmethane. The thermal, mechanical, and bonding properties were studied. A 3:1 copolymer of isophthalic and m-phenylenediacetic acid with 3,3′-diaminobenzidine showed the best results as far as isothermal oxidation resistance and thermal and processing characteristics.     

Internal Architecture and Adsorption Sites of Violet Lander Molecules Assembled on Native and KBr‐Passivated InSb(001) Surfaces

The adsorption of individual Violet Lander molecules self‐assembled on the c(8×2) reconstructed InSb(001) surface in its native form and on the surface passivated with one to three monolayers of KBr is investigated by means of low‐temperature scanning tunneling microscopy (STM). Preferred adsorption sites of the molecules are found on flat terraces as well as at atomic step edges. For molecules immobilized on flat terraces, several different conformations are identified from STM images acquired with submolecular resolution and are explained by the rotation of the 3,5‐di‐tert‐butylphenyl groups around σ bonds, which allows adjustment of the molecular geometry to the anisotropic substrate structure. Formation of ordered molecular chains is found at steps running along substrate reconstruction rows, whereas at the steps oriented perpendicularly no intermolecular ordering is recorded. It is also shown that the molecules deposited at two or more monolayers of the epitaxial KBr spacer do not have any stable adsorption sites recorded with STM. Prospects for the manipulation of single molecules by using the STM tip on highly anisotropic substrates are also explored, and demonstrate the feasibility of controlled lateral displacement in all directions.     

Synthesis of polyacrylonitrile via reverse atom transfer radical polymerization catalyzed by FeCl3/isophthalic acid

FeCl₃ coordinated by isophthalic acid was first used as a catalyst in the azobisisobutyronitrile‐initiated reverse atom transfer radical polymerization of acrylonitrile. N,N‐Dimethylformamide was used as a solvent to improve the solubility of the ligand. An FeCl₃‐to‐isophthalic acid ratio of 0.5 not only gave the best control of the molecular weight and its distribution but also provided rather a rapid reaction rate. The effects of different solvents on the polymerization of acrylonitrile were also investigated. The rate of the polymerization in N,N‐dimethylformamide was faster than that in propylene carbonate and toluene. The molecular weight of polyacrylonitrile agreed reasonably well with the theoretical molecular weight in N,N‐dimethylformamide. The rate of polymerization increased with increasing polymerization temperature, and the apparent activation energy was calculated to be 59.9 kJ mol^?1. Reverse atom transfer radical polymerization was first used to successfully synthesize acrylonitrile polymers with a molecular weight higher than 80,000 and a narrow polydispersity as low as 1.22. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 219–225, 2006     

Formation of polyimides by ?COOH and ?CN reactions

The synthesis of linear polyimides by the addition of dicarboxylic acids to dinitriles has been investigated. Adipic, suberic, m- and p-phenylenediacetic, isophthalic, and p-cyanobenzoic acids as well as adiponitrile, m- and p-phenylenediacetonitrile, and isophthalonitrile were studied. Fairly favorable results, low molecular weight polymers only, were obtained in the reaction of p-phenylenediacetic acid with p-phenylenediacetonitrile. The formation of polyimides seems to be restricted by the solubilities of the reactants and products as well as by the pK values of the starting dicarboxylic acid and of the acid which is formed.     

Regular Copolyamides. III. Preparation and Characterization of Regular Aliphatic/Aromatic Copolyoxamides

Regular aliphatic/aromatic copolyoxamides were prepared from diamine-oxamides and aromatic diacid chlorides by interfacial and solution polymerization. Solution polymerization in chloroform or dimethylacetamide is preferred for the preparation of large quantities of polymers but interfacial polymerization is most conveniently carried out for the preparation of polymers with high molecular weight. Aromatic diacid chlorides used included the diacid chlorides of terephthalic acid, isophthalic acid, 2,6-pyridinedicarboxylic acid, two isomeric naphthalene dicarboxylic acids, two cyclo-hexanedicarboxylic acid isomers, as well as 1,1-cyclobutane-dicarboxylic acid. Copolymers of diamine-oxamides with mixtures of acid chlorides of isophthalic and pyridine dicarboxylic acid and isophthalic acid/tetrachloroterephthalic acid have also been prepared. Most polymers are film-forming and are soluble in concentrated sulfuric acid, trifluoroacetic acid, and dimethylacetamide (containing several per cent LiCl). A number of these polymers gave dense or asymmetric membranes, particularly the polymers from ethylene diamine as the aliphatic diamine, particularly poly(iminoethyleneimino-oxalyliminoethyleneiminoisophthaloyl) (p-222I). Diamine oxamides with more than two amide groups in the molecules have been prepared, and in one case polymers with aromatic diacid chlorides have been prepared by interfacial polymerization. All regular aliphatic/aromatic copolyoxamides are high-melting and generally decompose above 350°C without melting. They can, however, be fabricated from solution into brittle fibers or into desalination membranes.     

Incorporation and manipulation of coronene in an organic template structure

A two-dimensional molecular template structure of 1,3,5-benzenetricarboxylic acid (trimesic acid, TMA) was formed on a highly oriented pyrolytic graphite surface (HOPG) by self-assembly at the liquid-solid interface. Scanning tunneling microscopy (STM) investigations show high-resolution images of the porous structure on the surface. After the host structure was created, coronene molecules were inserted as guest molecules into the pores. STM results indicate that some of the guest molecules rotate inside their molecular bearing. Further investigations show that single coronene molecules can be directly kicked out of their pores by means of STM.     

Mechanistic Insight into the Stereochemical Control of Lactide Polymerization by Salan–Aluminum Catalysts

Alkyl aluminum complexes of chiral salan ligands assembled around the 2,2′‐bipyrrolidine core form as single diastereomers that have identical configurations of the N donors. Active catalysts for the polymerization of lactide were formed upon the addition of benzyl alcohol. Polymeryl exchange between enantiomorphous aluminum species had a dramatic effect on the tacticity of the poly(lactic acid) (PLA) in the polymerization of racemic lactide (rac‐LA): The enantiomerically pure catalyst of the nonsubstituted salan ligand led to isotactic PLA, and the racemic catalyst exhibited lower stereocontrol. The enantiomerically pure catalyst of the chloro‐substituted salan ligand led to PLA with a slight tendency toward heterotacticity, whereas the racemic catalyst led to PLA of almost perfect heterotacticity following an insertion/auto‐inhibition/exchange mechanism.     

Synthesis of aromatic polyethersulfone‐based graft copolyacrylates via ATRP catalyzed by FeCl2/isophthalic acid

The atom transfer radical polymerization (ATRP) catalyzed by the FeCl₂/isophthalic acid system was used for the preparation of novel aromatic polyethersulfone (PSF)‐based graft copolymers in N,N‐dimethylformamide (DMF), such as aromatic PSF‐graft‐poly(methyl methacrylate), aromatic PSF‐graft‐polymethylacrylate, and aromatic PSF‐graft‐poly(butyl acrylate). The route consisted of two steps. The first step included the chloromethylation of aromatic PSF, and the second step involved the ATRP of acrylate monomers using chloromethylated aromatic PSF as the macroinitiator and FeCl₂/isophthalic acid as the catalyst in DMF. Characterization data by gel permeation chromatography, DSC, IR, ¹H NMR, and thermogravimetric analysis confirmed that the graft copolymerization was successful. Only one glass‐transition temperature (T_g) was observed for aromatic PSF‐graft‐poly(methyl methacrylate), and two T_g's were detected for aromatic PSF‐graft‐methyl acrylate and aromatic PSF‐graft‐poly(butyl acrylate). © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 2943–2950, 2001     

On‐Surface Self‐Assembly of a C3‐Symmetric π‐Conjugated Molecule Family Studied by STM: Two‐Dimensional Nanoporous Frameworks

The on‐surface self‐assembled behavior of four C ₃‐symmetric π‐conjugated planar molecules ( Tp , T12 , T18 , and Ex ) has been investigated. These molecules are excellent building blocks for the construction of noncovalent organic frameworks in the bulk phase. Their hydrogen‐bonded 2D on‐surface self‐assemblies are observed under STM at the solid/liquid interface; these structures are very different to those in the bulk crystal. Upon combining the results of STM measurements and DFT calculations, the formation mechanism of different assemblies is revealed; in particular, the critical role of hydrogen bonding in the assemblies. This research provides us with not only a deep insight into the self‐assembled behavior of these novel functional molecules, but also a convenient approach toward the construction of 2D multiporous networks.     

Optical activity of the guest azobenzene molecule generated by inclusion complexation with steroidal bile acids

The crystalline inclusion complexes of azobenzene 1 with cholic CA and deoxycholic DCA acid were prepared and their solid state CD spectra measured. The positive Cotton effect sign, corresponding to the lowest energy n–π* transition, was correlated with the M,M helicity of the twisted guest molecule. The absolute sense of twist of the enclathrated guest molecule 1 was deduced from the X-ray structure of the 1·CA complex. In addition, the solid state CD spectrum of the enantiomorphous crystals of methyl yellow 2 was measured. The source of the optical activity is a slight twisting of the constituent molecules and their helical arrangement in the crystal.     

Amide‐Based Oligocatenanes by an Iterative Template Strategy

A new pathway for the supramolecular synthesis of oligocatenanes is developed. It is based on a combination of most suitable macrocyclic structural units, obtained from tert‐butyl‐substituted isophthalic acid and terephthalic acid building blocks. These structural parts guarantee, on the one hand, the solubility of the catenanes and their intermediates, and, on the other hand, the preferred formation of larger ring sizes of the macrocycles to be intertwined. Acting as monotopic and ditopic concave templates, the tetra‐ and octalactam macrocycles were submitted to threading procedures to yield higher‐order catenanes of the amide type. By repetition of the threading steps, it was possible to isolate multiply mechanically connected [n]catenanes up to n=4 composed of various macrocyclic units.