Helical supramolecular assembly of N2,N2′‐bis[3‐(morpholin‐4‐yl)propyl]‐N1,N1′‐(1,2‐phenylene)dioxalamide dimethyl sulfoxide monosolvate

In the title compound, C₂₄H₃₆N₆O₆·C₂H₆OS, the carbonyl groups are in an antiperiplanar conformation, with O=C—C=O torsion angles of 178.59 (15) and −172.08 (16)°. An intramolecular hydrogen‐bonding pattern is depicted by four N—H...O interactions, which form two adjacent S(5)S(5) motifs, and an N—H...N interaction, which forms an S(6) ring motif. Intermolecular N—H...O hydrogen bonding and C—H...O soft interactions allow the formation of a meso‐helix. The title compound is the first example of a helical 1,2‐phenylenedioxalamide. The oxalamide traps one molecule of dimethyl sulfoxide through N—H...O hydrogen bonding. C—H...O soft interactions give rise to the two‐dimensional structure.     

The first structurally analysed nucleic acid building block containing the Reese protecting group: 2′‐O‐[1‐(2‐fluorophenyl)‐4‐methoxypiperidin‐4‐yl]‐β‐D‐(1′R,2′R,3′R,4′R)‐uridine

The title compound, C₂₁H₂₆FN₃O₇, is assembled by N—H...O and O—H...O hydrogen bonds into well‐separated two‐dimensional layers of about 15 Å thickness. The crescent conformation of the molecules is stabilized by weak intramolecular C—H...O and C—H...F hydrogen bonds. The uridine moiety adopts an anti conformation. The ribofuranose ring exists in an envelope conformation. All the endocyclic uracil bonds are shorter than normal single C—N and C—C bonds, and five of them have comparable lengths, which implies a considerable degree of delocalization of the electron density within this ring.     

(2R*,4S*)‐2‐(Pyridin‐3‐yl)‐2,3,4,5‐tetrahydro‐1H‐1‐benzazepin‐4‐ol: a three‐dimensional framework built from O—H...N,C—H...O and C—H...π(arene) hydrogen bonds

The title compound, C₁₅H₁₆N₂O, crystallizes in the space group P2₁2₁2₁ with Z′ = 1. The seven‐membered ring adopts a chair‐type conformation with the hydroxy and pyridyl substituents in equatorial sites. Molecules are linked into a three‐dimensional framework structure by a combination of O—H...N, C—H...O and C—H...π(arene) hydrogen bonds, but N—H...O and N—H...π(arene) interactions are absent from the structure. Comparisons are made with some related compounds.     

(Z)‐5‐[(5‐Methyl‐1H‐imidazol‐4‐yl)methylidene]‐2‐sulfanylidene‐1,3‐thiazolidin‐4‐one monohydrate: a three‐dimensional hydrogen‐bonded framework structure

The non‐H atoms in the organic component of the title compound, C₈H₇N₃OS₂·H₂O, are almost coplanar, as the dihedral angle between the two ring planes is only 1.8 (2)°; there is a wide C—C—C angle of 127.8 (3)° at the methine C atom linking the two rings. The molecular components are linked into a three‐dimensional framework structure by two‐centre hydrogen bonds of N—H...O and O—H...N types, together with a three‐centre O—H...(N,S) system. Comparisons are made with some (Z)‐5‐arylmethylidene‐2‐sulfanylidene‐1,3‐thiazolidin‐4‐ones.     

S‐(4‐Nitrophenyl) 4‐nitrobenzenethiosulfonate

The title compound, C₁₂H₈N₂O₆S₂, (I), is a positional isomer of S‐(2‐nitrophenyl) 2‐nitrobenzenethiosulfonate [Glidewell, Low & Wardell (2000). Acta Cryst. B 56 , 893–905], (II). The most obvious difference between the two isomers is the rotation of the nitro groups with respect to the planes of the adjacent aryl rings. In (I), the nitro groups are only slightly rotated out of the plane of the adjacent aryl ring [2.4 (6) and 6.7 (7)°], while in (II) the nitro groups are rotated by between 37 and 52°, in every case associated with S—S—C—C torsion angles close to 90°. Other important differences between the isomers are the C—S—S(O₂)—C torsion angle [78.39 (2)° for (I) and 69.8 (3)° for (II) (mean)] and the dihedral angles between the aromatic rings [12.3 (3)° for (I) and 28.6 (3)° for (II) (mean)]. There are two types of C—H...O hydrogen bond in the structure [C...O = 3.262 (7) Å and C—H...O = 144°; C...O = 3.447 (7) Å and C—H...O = 166°] and these link the molecules into a two‐dimensional framework. The hydrogen‐bond‐acceptor properties differ between the two isomers.     

`Segmented' crystals solved using synchrotron radiation: (2S,3R,4S,5R)‐4‐(10,10‐dimethyl‐3,3‐dioxo‐3λ6‐thia‐4‐azatricyclo[5.2.1.01,5]decan‐4‐ylcarbonyl)‐2,6‐diphenylperhydropyrrolo[3,4‐c]pyrrole‐1,3‐dione

The title compound, C₂₉H₃₁N₃O₅S, forms needle‐shaped `segmented' crystals, thereby inhibiting successful single‐crystal data collection using conventional laboratory facilities. One crystallite of dimensions 0.15 × 0.03 × 0.01 mm yielded sufficent single‐crystal diffraction data on the Australian Synchrotron PX1 beamline. The two independent molecules in the asymmetric unit are nearly superimposable and show only minor conformational deviations from closely related compounds. The molecules pack using one N—H...O hydrogen bond and several phenyl C—H...O(=S), phenyl C—H...O(=C) and methylene C—H...O(=C) hydrogen bonds and weak C—H...π interactions.     

Methyl 4‐[(1‐acetyl‐3‐tert‐butyl‐1H‐pyrazol‐5‐yl)amino]‐3‐nitrobenzoate

In the molecule of the title compound, C₁₇H₂₀N₄O₅, there are two intramolecular N—H...O hydrogen bonds having amidic and nitro‐group O atoms as the acceptors and together forming a three‐centre N—H...(O)₂ system. These interactions appear to play an important role in controlling the relative orientation of the pyrazole and aryl rings. The bond distances provide evidence for some polarization of the electronic structure. Molecules are linked into simple chains by a single C—H...O hydrogen bond.     

4,6‐Bis­(methyl­sulfanyl)‐1‐(4‐phenoxy­butyl)‐1H‐pyrazolo­[3,4‐d]­pyrimidine

The molecular structure of the title compound, C₁₇H₂₀N₄OS₂, does not show any intramolecular aromatic π–π interactions, but the crystal packing reveals the presence of intermolecular C—H...O and C—H...π interactions. The C—H...O interactions generate chains of mol­ecules that are linked into sheets by C—H...π interactions about inversion centres.     

Assembling an isomer grid: the isomorphous 4‐, 3‐ and 2‐fluoro‐N′‐(4‐pyridyl)benzamides

The three title isomers, 4‐, (I), 3‐, (II), and 2‐fluoro‐N′‐(4‐pyridyl)benzamide, (III), all C₁₂H₉FN₂O, crystallize in the P2₁/c space group (No. 14) with similar unit‐cell parameters and are isomorphous and isostructural at the primary hydrogen‐bonding level. An intramolecular C—H...O=C interaction is present in all three isomers [C...O = 2.8681 (17)–2.884 (2) Å and C—H...O117–118°], with an additional N—H...F [N...F = 2.7544 (15) Å] interaction in (III). Intermolecular amide–pyridine N—H...N hydrogen bonds link molecules into one‐dimensional zigzag chains [graph set C(6)] along the [010] direction as the primary hydrogen bond [N...N = 3.022 (2), 3.049 (2) and 3.0213 (17) Å]. These are augmented in (I) by C—H...π(arene) and cyclic C—F...π(arene) contacts about inversion centres, in (II) by C—F...F—C interactions [C...F = 3.037 (2) Å] and weaker C—H...π(arene)/C—H...F contacts, and in (III) by C—H...π(arene) and C=O...O=C interactions, linking the alternating chains into two‐dimensional sheets. Typical amide N—H...O=C hydrogen bonds [as C(4) chains] are not present [N...O = 3.438 (2) Å in (I), 3.562 (2) Å in (II) and 3.7854 (16) Å in (III)]; the C=O group is effectively shielded and only participates in weaker interactions/contacts. This series is unusual as the three isomers are isomorphous (having similar unit‐cell parameters, packing and alignment), but they differ in their interactions and contacts at the secondary level.     

N‐(4‐Nitrobenzoyl)‐N′‐phenylhydrazine: a three‐dimensional hydrogen‐bonded framework

In the title compound (systematic name: N‐anilino‐4‐nitrobenzamide), C₁₃H₁₁N₃O₃, the molecules are linked into a complex three‐dimensional framework structure by a combination of two‐centre N—H...O and C—H...O hydrogen bonds and a three‐centre N—H...(O,N) hydrogen bond.     

(η5‐Cyclopentadienyl)(3‐hydroxy‐3‐methylbut‐1‐ynyl‐κC1)(triphenylphosphine‐κP)nickel(II): novel O—H...π bonding in an organometallic molecule

In the title compound, [Ni(C₅H₅)(C₅H₇O)(C₁₈H₁₅P)], the molecule adopts the expected half‐sandwich structure with no unusual metal–ligand distances. No classical hydrogen bonds are found in the structure; instead, the OH group of the butynol unit is involved in an unusual O—H...π interaction with the C[triple‐bond]C group of an adjacent molecule. The crystal structure is further stabilized by C—H...O and C—H...π interactions, leading to an extensive network of spiral columns.     

1‐(2‐Aminophenyl)‐3‐(4‐pyridyl)prop‐2‐en‐1‐one: a three‐dimensional framework structure built from N—H...N,C—H...O and C—H...π(arene) hydrogen bonds

The intramolecular dimensions of the title compound, C₁₄H₁₂N₂O, provide evidence for a polarized electronic structure. The molecule, which is almost completely planar, contains an intramolecular N—H...O hydrogen bond, and the molecules are linked by a combination of N—H...N, C—H...O and C—H...π(arene) hydrogen bonds to form a three‐dimensional framework structure.     

Pseudomerohedral twinning,pseudosymmetry and complex hydrogen‐bonded sheets in 2‐methoxy‐4‐(pyrrolo[1,2‐a]quinoxalin‐4‐yl)phenol

The title compound, C₁₈H₁₄N₂O₂, crystallizes as a nonmerohedral twin, but the structure can be satisfactorily refined as a merohedral twin, in which a monoclinic unit cell with a cell angle β close to 90° emulates a metrically orthorhombic cell. The two molecules in the asymmetric unit are very similar in structure and they are related by an approximate pseudo‐screw axis. The molecules are linked into complex sheets by a combination of two O—H...N hydrogen bonds and four C—H...O hydrogen bonds.     

Crystal structures of the pyrazinamide–p‐aminobenzoic acid (1/1) cocrystal and the transamidation reaction product 4‐(pyrazine‐2‐carboxamido)benzoic acid in the molten state

The synthesis of pharmaceutical cocrystals is a strategy to enhance the performance of active pharmaceutical ingredients (APIs) without affecting their therapeutic efficiency. The 1:1 pharmaceutical cocrystal of the antituberculosis drug pyrazinamide (PZA) and the cocrystal former p‐aminobenzoic acid (p‐ABA), C₇H₇NO₂·C₅H₅N₃O, (1), was synthesized successfully and characterized by relevant solid‐state characterization methods. The cocrystal crystallizes in the monoclinic space group P2₁/n containing one molecule of each component. Both molecules associate via intermolecular O—H...O and N—H...O hydrogen bonds [O...O = 2.6102 (15) Å and O—H...O = 168.3 (19)°; N...O = 2.9259 (18) Å and N—H...O = 167.7 (16)°] to generate a dimeric acid–amide synthon. Neighbouring dimers are linked centrosymmetrically through N—H...O interactions [N...O = 3.1201 (18) Å and N—H...O = 136.9 (14)°] to form a tetrameric assembly supplemented by C—H...N interactions [C...N = 3.5277 (19) Å and C—H...N = 147°]. Linking of these tetrameric assemblies through N—H...O [N...O = 3.3026 (19) Å and N—H...O = 143.1 (17)°], N—H...N [N...N = 3.221 (2) Å and N—H...N = 177.9 (17)°] and C—H...O [C...O = 3.5354 (18) Å and C—H...O = 152°] interactions creates the two‐dimensional packing. Recrystallization of the cocrystals from the molten state revealed the formation of 4‐(pyrazine‐2‐carboxamido)benzoic acid, C₁₂H₉N₃O₃, (2), through a transamidation reaction between PZA and p‐ABA. Carboxamide (2) crystallizes in the triclinic space group P with one molecule in the asymmetric unit. Molecules of (2) form a centrosymmetric dimeric homosynthon through an acid–acid O—H...O hydrogen bond [O...O = 2.666 (3) Å and O—H...O = 178 (4)°]. Neighbouring assemblies are connected centrosymmetrically via a C—H...N interaction [C...N = 3.365 (3) Å and C—H...N = 142°] engaging the pyrazine groups to generate a linear chain. Adjacent chains are connected loosely via C—H...O interactions [C...O = 3.212 (3) Å and C—H...O = 149°] to generate a two‐dimensional sheet structure. Closely associated two‐dimensional sheets in both compounds are stacked via aromatic π‐stacking interactions engaging the pyrazine and benzene rings to create a three‐dimensional multi‐stack structure.     

10‐Benzyl‐4‐oxo‐2,3,4,10‐tetrahydropyrimido[4,5‐b]quinolin‐2‐iminium chloride sesquihydrate: a polarized electronic structure within a complex hydrogen‐bonded sheet structure

In the title compound, C₁₈H₁₅N₄O⁺·Cl⁻·1.5H₂O, one water site is fully ordered with unit occupancy while the other, which lies close to an inversion centre in the space group C2/c, has only 0.5 occupancy. The cation exhibits bond fixation in the fused carbocyclic ring and electronic polarization in the terminal heterocyclic ring. The components are linked into complex sheets by a combination of N—H...O, N—H...Cl, O—H...O, O—H...Cl and C—H...O hydrogen bonds.     

Hydrogen bonding in two ammonium salts of 5‐sulfosalicylic acid: ammonium 3‐carboxy‐4‐hydroxybenzenesulfonate monohydrate and triammonium 3‐carboxy‐4‐hydroxybenzenesulfonate 3‐carboxylato‐4‐hydroxybenzenesulfonate

The structures of two ammonium salts of 3‐carboxy‐4‐hydroxybenzenesulfonic acid (5‐sulfosalicylic acid, 5‐SSA) have been determined at 200 K. In the 1:1 hydrated salt, ammonium 3‐carboxy‐4‐hydroxybenzenesulfonate monohydrate, NH₄⁺·C₇H₅O₆S⁻·H₂O, (I), the 5‐SSA⁻ monoanions give two types of head‐to‐tail laterally linked cyclic hydrogen‐bonding associations, both with graph‐set R₄⁴(20). The first involves both carboxylic acid O—H...O_water and water O—H...O_sulfonate hydrogen bonds at one end, and ammonium N—H...O_sulfonate and N—H...O_carboxy hydrogen bonds at the other. The second association is centrosymmetric, with end linkages through water O—H...O_sulfonate hydrogen bonds. These conjoined units form stacks down c and are extended into a three‐dimensional framework structure through N—H...O and water O—H...O hydrogen bonds to sulfonate O‐atom acceptors. Anhydrous triammonium 3‐carboxy‐4‐hydroxybenzenesulfonate 3‐carboxylato‐4‐hydroxybenzenesulfonate, 3NH₄⁺·C₇H₄O₆S²⁻·C₇H₅O₆S⁻, (II), is unusual, having both dianionic 5‐SSA²⁻ and monoanionic 5‐SSA⁻ species. These are linked by a carboxylic acid O—H...O hydrogen bond and, together with the three ammonium cations (two on general sites and the third comprising two independent half‐cations lying on crystallographic twofold rotation axes), give a pseudo‐centrosymmetric asymmetric unit. Cation–anion hydrogen bonding within this layered unit involves a cyclic R₃³(8) association which, together with extensive peripheral N—H...O hydrogen bonding involving both sulfonate and carboxy/carboxylate acceptors, gives a three‐dimensional framework structure. This work further demonstrates the utility of the 5‐SSA⁻ monoanion for the generation of stable hydrogen‐bonded crystalline materials, and provides the structure of a dianionic 5‐SSA²⁻ species of which there are only a few examples in the crystallographic literature.     

Dimers linked by type‐I C—F...F—C contacts in (Z)‐3‐methyl‐4‐[2‐(4‐methylphenyl)hydrazinylidene]‐1‐(pentafluorophenyl)‐1H‐pyrazol‐5(4H)‐one

The title compound, C₁₇H₁₁F₅N₄O, is described and compared with two closely related analogues in the literature. There are two independent molecules in the asymmetric unit, linked by N—H...O hydrogen bonds and π–π interactions into dimeric entities, presenting a noticeable noncrystallographic C₂ symmetry. These dimers are in turn linked by a medium‐strength type‐I C—F...F—C interaction into elongated tetramers. Much weaker C—H...F contacts link the tetramers into broad two‐dimensional substructures parallel to (101).     

3′,4′‐Bis(4‐chloro­phenyl)­spiro­[chroman‐3,5′(4′H)‐isoxazol]‐4‐one

The title compound, C₂₃H₁₅Cl₂NO₃, crystallizes with two independent mol­ecules in the asymmetric unit. The chroman­one moiety consists of a benzene ring fused with a six‐membered heterocyclic ring which adopts a sofa conformation. The five‐membered spiro­isoxazoline ring is in an envelope conformation. The p‐chloro­phenyl rings bridged by the five‐membered ring are nearly perpendicular to each other. The chromanone moiety of one mol­ecule packs into the cavity formed by the p‐chloro­phenyl rings of a second mol­ecule through the formation of C—H?π interactions. The structure is stabilized by weak C—H?O, C—H?Cl and C—H?π interactions.     

Three different fluoro‐ or chloro‐substituted 1′‐deoxy‐1′‐phenyl‐β‐D‐ribofuranoses

Crystal structures are reported for three fluoro‐ or chloro‐substituted 1′‐deoxy‐1′‐phenyl‐β‐D‐ribofuranoses, namely 1′‐deoxy‐1′‐(2,4,5‐trifluorophenyl)‐β‐D‐ribofuranose, C₁₁H₁₁F₃O₄, (I), 1′‐deoxy‐1′‐(2,4,6‐trifluorophenyl)‐β‐D‐ribofuranose, C₁₁H₁₁F₃O₄, (II), and 1′‐(4‐chlorophenyl)‐1′‐deoxy‐β‐D‐ribofuranose, C₁₁H₁₃ClO₄, (III). The five‐membered furanose ring of the three compounds has a conformation between a C2′‐endo,C3′‐exo twist and a C2′‐endo envelope. The ribofuranose groups of (I) and (III) are connected by intermolecular O—H...O hydrogen bonds to six symmetry‐related molecules to form double layers, while the ribofuranose group of (II) is connected by O—H...O hydrogen bonds to four symmetry‐related molecules to form single layers. The O...O contact distance of the O—H...O hydrogen bonds ranges from 2.7172 (15) to 2.8895 (19) Å. Neighbouring double layers of (I) are connected by a very weak intermolecular C—F...π contact. The layers of (II) are connected by one C—H...O and two C—H...F contacts, while the double layers of (III) are connected by a C—H...Cl contact. The conformations of the molecules are compared with those of seven related molecules. The orientation of the benzene ring is coplanar with the H—C1′ bond or bisecting the H—C1′—C2′ angle, or intermediate between these positions. The orientation of the benzene ring is independent of the substitution pattern of the ring and depends mainly on crystal‐packing effects.     

Hydrogen‐bonded dimers in 3‐amino‐4‐anilino‐1H‐isochromen‐1‐one and a hydrogen‐bonded sheet in 3‐amino‐4‐[methyl(phenyl)amino]‐1H‐isochromen‐1‐one

The molecules of 3‐amino‐4‐anilino‐1H‐isochromen‐1‐one, C₁₅H₁₂N₂O₂, (I), and 3‐amino‐4‐[methyl(phenyl)amino]‐1H‐isochromen‐1‐one, C₁₆H₁₄N₂O₂, (II), adopt very similar conformations, with the substituted amino group PhNR, where R = H in (I) and R = Me in (II), almost orthogonal to the adjacent heterocyclic ring. The molecules of (I) are linked into cyclic centrosymmetric dimers by pairs of N—H...O hydrogen bonds, while those of (II) are linked into complex sheets by a combination of one three‐centre N—H...(O)₂ hydrogen bond, one two‐centre C—H...O hydrogen bond and two C—H...π(arene) hydrogen bonds.