A microcalorimetry and binding study on interaction of dodecyl trimethylammonium bromide with wigeon hemoglobin

The thermodynamic parameters for the binding of dodecyl trimethylammonium bromide (DTAB) with wigeon hemoglobin (Hb) in aqueous solution at various pH and 27 °C have been measured by equilibrium dialysis and titration microcalorimetry techniques. The Scatchard plots represent unusual features at neutral and alkaline pH and specific binding at acidic pH. This leads us to analyze the binding data by fitting the data to the Hill equation for multiclasses of binding sites. The best fit was obtained with the equation for one class at acidic pH and two classes at neutral and alkaline pH. The thermodynamic analysis of the binding process shows that the strength of binding at neutral pH is more than these at other pH values. This can be related to the more accessible hydrophobic surface area of wigeon hemoglobin at this pH. The endothermic enthalpy data which was measured by microcalorimetry confirms the binding data analysis and represents the more regular and stable structure of wigeon hemoglobin at neutral pH.     

Thermodynamics of Binding 2,2′-Bipyridineglycinato Palladium (II) Chloride on Human Serum Albumin

The interaction of human serum albumin (HSA) with 2,2′-bipyridineglycinato palladium (II) chloride was studied by isothermal titration microcalorimetry at 27°C and equilibrium dialysis and UV-Vis. spectrophotometry techniques at temperatures of 27 & 37°C in 2.5 mM phosphate buffer solution at pH = 7.0. The enthalpy of binding was calculated from binding data, which were obtained from equilibrium dialysis in terms of the Wyman binding potential theory related to the van't Hoff relation. The enthalpy of HSA unfolding was determined by subtraction of the microcalorimetric enthalpy (binding and unfolding enthalpies) and the enthalpy of binding. The enthalpy of HSA unfolding, due to the binding of that ligand, was 491.43 kJ mol^?1.     

Thermodynamic Studies on the Interaction of Cobalt with Alpha-Amylase

The interaction of α-amylase from Bacillus amyloliquefaciens with divalent cobalt ion was studied by equilibrium dialysis and isothermal titration microcalorimetry methods at 27 °C in neutral solution at pH = 7.0. A new equation with a useful graphical method, very similar to the Scatchard plot was introduced to obtain a dissociation equilibrium constant using microcalorimetric data. The constant is remarkably like that obtained from a normal Scatchard plot, which uses equilibrium dialysis data. The enzyme activity increased significantly with an increasing concentration of cobalt; however, the temperature of denaturation of the enzyme decreased.     

Isothermal titration calorimetry of Ni(II) binding to histidine and to N-2-aminoethylglycine

Isothermal titration calorimetry (ITC) is used to study the complexation thermodynamics of Ni(II) with histidine (His) and with N-2-aminoethylglycine (EDMA). The titrations were performed in HEPES and Tris buffers at various ionic strengths and pH values around 8. The results show the influence of the experimental conditions on the shape and fitting parameters of the calorimetric curves. For the studied systems, the main reaction is concomitant with a number of side reactions which contribute to the global energy measured. From the calorimetric data measured, the formation constants for the species NiHEPES⁺, Tris⁺His⁻, TrisNiHis⁺ and [Ni(EDMA)₂OH]⁻ have been evaluated for the first time and the values obtained properly validated.     

Reversed-phase ion-pair liquid chromatographic method for determination of reaction equilibria involving ionic species: exemplification of the method using ligand substitution reactions of ethylenediaminetetraacetatochromium(III) ion with acetate and phosphate ions

A reversed-phase ion-pair liquid chromatographic method is presented for the determination of reaction equilibria involving ionic species of the same charge sign as reactant and product compounds. It has been demonstrated that ion-exchange chromatography or reversed-phase ion-pair chromatography is a useful tool for the determination of equilibrium constants of chemical reactions involving ionic species such as metal complexation reactions. Previous work with these methods has been based on the assumption that the limiting retention factors of the reactant and product species are constant independent of concentration of the chemical species (X) in the mobile phase, which reacts with the analyte compound. However, when all the reactant and product species are ions of the same charge sign as that of the species X, it is virtually impossible to apply these methods to the equilibrium constant determination because the retention factors of both the reactant and product species may depend on the concentration of X. In this study, an alternative approach was developed that estimates the limiting retention factors of ionic species from the dependence of the retention factor on the ionic strength of the mobile phase. Ligand substitution reactions of ethylenediaminetetraacetatochromium(III) ion with acetate and phosphate ions were used as model reactions to test this method. The equilibrium constants determined by this method are in good agreement with those obtained by a UV-visible spectrophotometric method.     

对(mèng)烷的~(13)C-NMR研究顺反异构体比及顺式构象平衡常数K(35℃)

本工作是在35℃下测定对(艹孟)烷(p-Menthane)(即对位甲基异丙基环已烷)的~(13)C-NMR谱。由取代基参数,经验加和规律计算各碳化学位移数值,归属各谱峰位置。由积分值得知顺式、反式对(艹孟)烷含量之比。并根据权分法计算顺式对(艹孟)烷中构象1与构象2分子数之比。结果表明顺式对(艹孟)烷中异丙基处于平展位置的构象2为主。     

Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: applications to structural and energetic analysis

Parameters for the zinc ion have been developed in the self-consistent charge density functional tight-binding (SCC-DFTB) framework. The approach was tested against B3LYP calculations for a range of systems, including small molecules that contain the typical coordination environment of zinc in biological systems (cysteine, histidine, glutamic/aspartic acids, and water) and active site models for a number of enzymes such as alcohol dehydrogenase, carbonic anhydrase, and aminopeptidase. The SCC-DFTB approach reproduces structural and energetic properties rather reliably (e.g., total and relative ligand binding energies and deprotonation energies of ligands and barriers for zinc-assisted proton transfers), as compared with B3LYP/6-311+G** or MP2/6-311+G** calculations.     

Tricarbonylrhenium(I) complexes with the N,6-dimethylpyridine-2-carbothioamide ligand: combined experimental and calculation studies

Abstract

A new series of tricarbonyl complexes of rhenium(I) in the “2 + 1” system with the bidentate ligand N,6-dimethylpyridine-2-carbothioamide ((CH₃)NC₅H₄-CS-NH-CH₃, MeLH(Me)_NS) and a monodentate ligand (halides Cl, Br, or I, and the pseudohalide NCS anion) was synthesized. The use of mixed ligands led to the formation of neutral tricarbonylrhenium(I) complexes [Re(CO)₃(MeLH(Me)_NS)X] (X = Cl, Br, I, NCS) (1–4). Single-crystal X-ray diffraction was used to determine the crystal structures of all four compounds and those results were compared with molecular structures obtained from DFT calculations using the PBE0/def2-TZVPD approach. The complexes were also characterized by spectroscopic (FT-IR, NMR, and UV–vis) and analytical (HPLC, TGA, EA, ESI-MS) techniques. IR and UV–vis spectra were also calculated by DFT and TD-DFT methods. The cytotoxicity of these complexes was estimated using human ovarian cancer cell lines (A2780 and A2780cis), cervical cancer cells (HeLa), and non-cancerous human embryonic kidney cells (Hek-293). The toxicity of most complexes was moderate or low toward cancer cell lines (IC₅₀ = 46–231 μM) and similar against non-cancerous cells (IC₅₀ = 41-121 μM). Only the complex with chlorido ligand remarkably inhibited growth of ovarian cancer cells (IC₅₀ = 3 and 12 μM for A2780 and A2780cis, respectively). The cytotoxicity of 1 was higher than that of cisplatin.     

Non-ionic surfactant modified ligand exchange chromatography using copper (II) complex of N,N-dimethyl-l-phenylalanine as the chiral additive for enantioselective amino acids separation

The influence of non-ionic surfactants on the selectivity and retention in the ligand exchange chromatography for the enantioselective separation of racemic mixtures of the amino acids dl-methionine, dl-leucine, dl-valine and dl-tyrosine applying chiral mobile phases was investigated, whereas five different surfactants were tested as modifiers. The experiments were carried out using a commercially available non-chiral RP-C8 column and the copper (II) complex of N,N-dimethyl-l-phenylalanine as the chiral additive. Varying the surfactant concentrations the retention factors and the selectivity could be controlled and in general no negative influence on the separation (due to surfactant adsorption on the non-chiral stationary phase) occurred. Changing the temperature the van’t Hoff plots were obtained and the thermodynamic parameters calculated. Temperature had influence on the selectivity for each surfactant and lowered the retention times as expected.     

Structures,DNA binding,DNA cleavage,and antitumor investigations of a series of molybdenum(VI) complexes with some N(4) methyl and ethyl thiosemicarbazone ligands

Four dioxomolybdenum(VI) complexes were synthesized by reaction of [MoO₂(acac)₂] with thiosemicarbazones derived from 5-allyl-2-hydroxy-3-methoxybenzaldehyde (1), 2-hydroxynaphthaldehyde (2), 2,3-dihydroxybenzaldehyde (3), or 5-tert-butyl-2-hydroxybenzaldehyde (4). The ligands were coordinated to molybdenum as tridentate ONS donors. X-ray crystallography showed that the distorted octahedral coordination of molybdenum is completed by methanol (D) in 1a, 3a, and 4a or H₂O in 2a. The molecular structures of 1, 3, and 4, and the complexes were determined by single-crystal X-ray crystallography. Binding of the ligand and complexes with calf thymus DNA were investigated by UV, fluorescence titrations, and viscosity measurements. Gel electrophoresis revealed that all the complexes can cleave pBR322 plasmid DNA. The cytotoxic properties of the complexes against human colorectal (HCT 116) cell line showed strong antiproliferative activities in relative order 4a?>?3a?>?1a?>?2a with IC₅₀ values of 1.6, 4.0, 4.8, and 6.7?μM, respectively. The complexes exhibited more activity than the standard reference drug, 5-fluorouracil (IC₅₀ 7.3?μM). These studies show that dioxomolybdenum(VI) complexes have potential use in chemotherapy.     

A combinatorial approach to studying the effects of N-alkyl groups on poly(N-alkyl and N,N-dialkylacrylamide) solubility

Soluble polymers including poly(N-alkylacrylamide)s with low mole percent loadings of pendant groups are of interest in applications in catalysis, synthesis, sequestration, and soluble affinity chromatography where their thermal and phase-dependent solubility facilitates purification and separation. This work describes a library synthesis and study of the effects of polymer composition on the phase-selective solubility of dye-labeled poly(N-n-octadecylacrylamide-co-N-n-butylacrylamide) copolymers. To study the relative importance of n-octadecyl versus n-butyl groups, copolymers with different ratios of n-octadecylacrylamide and n-butylacrylamide but with similar degrees of polymerization and polydispersity were prepared by a split-pool synthesis using a highly soluble poly(N-acryloxy-2-dodecylsuccinimide) as the precursor. Polymer sequestrants were used to remove excess amines and the byproduct N-hydroxyl-2-dodecylsuccinimide without fractionation of the polyacrylamides. Other studies of dye-labeled poly(N,N-dialkylacrylamide)s prepared by the polymerization of N,N-dialkylacrylamides with methyl, ethyl, propyl, butyl, pentyl, and hexyl N-alkyl groups in a variety of thermomorphic or latent biphasic polar/nonpolar solvent mixtures showed that poly(N,N-dialkylacrylamide)s like poly(N-alkylacrylamide)s have phase-selective solubility that is highly dependent on the size of the N-alkyl group.     

Ligand substitution in HC(O)CCo3(CO)9 with 4,5-bis(diphenylphosphino)-4-cyclopenten-1,3-dione (bpcd): Diphosphine ligand fluxionality, decarbonylation of the formyl moiety and competitive P-Ph bond cleavage reactivity

The reaction of the formyl-capped cluster HC(O)CCo₃(CO)₉ (1) with the diphosphine ligand 4,5-bis(diphenylphosphino)-4-cyclopenten-1,3-dione (bpcd) in the presence of added Me₃NO leads to the production of the disubstituted cluster HC(O)CCo₃(CO)₇(bpcd) (2). Thermolysis of 2 in toluene at 60 °C gives the methylidyne-capped cluster HCCo₃(CO)₇(bpcd) (4) and the phosphido-bridged cluster Co₃(CO)₇[μ₂,η²,η¹-P(Ph)CC(PPh₂)C(O)CH₂C(O)] (5). Cluster 4 has been independently prepared from HCCo₃(CO)₉ and bpcd and shown to serve as the precursor to 5. The new clusters 2, 4, and 5 have been isolated and characterized in solution by IR and NMR (¹H and ³¹P) spectroscopies and their solid-state structures have been established by X-ray diffraction analyses. Both clusters 2 and 4 contain 48e- and exhibit triangular Co₃ cores with a chelating and bridging bpcd ligand in the solid state, respectively. The structure of 5 provides unequivocal support for the loss of the methylidyne capping ligand and P-Ph bond cleavage attendant in the activation of 4 and confirms the presence of the face capping seven-electron μ₂,η²,η¹-P(Ph)CC(PPh₂)C(O)CH₂C(O) ligand in the final product. The fluxionality displayed by the bpcd ligand in clusters 2 and 4 and the decarbonylation behavior of the formyl moiety in the former cluster are discussed relative to related alkylidyne-capped Co₃ derivatives.     

The determination of the stability constants of mixed ligand complexes of adenine and amino acids with Ni(II) by potentiometric titration method

A potentiometric titration technique has been used to determine the stability constants for the various complexes of Ni(II) with adenine (A) as primary ligand and selected amino acids (L) as secondary ligands. Ternary complexes of amino acids are formed in a stepwise mechanism, whereby (A) binds to Ni(II), followed by interaction with ligand (L), whereas thiol-containing ligands form ternary complexes through a simultaneous mechanism. The formation constants of the complexes were determined at 25 °C and ionic strength 0.1 M NaNO₃. The relative stabilities of the ternary complexes are compared with those of the corresponding binary complexes in terms of Δlog K values. The concentration distribution of the complexes are evaluated.     

Coordination behavior of 3,4-bis(2-pyridylmethylthio)toluene with copper(II) ions: Synthesis,structural characterization and reactivity,and DNA binding study of the dinuclear copper(II) complex

On reaction of different copper(II) salts with 3,4-bis(2-pyridylmethylthio)toluene (L) having neutral tetradentate NSSN donor set in different chemical environments, two mononuclear copper(II), one dinuclear copper(I) and one dinuclear copper(II) complexes, formulated as [Cu^II(L)(H₂O)₂](NO₃)₂ (1), [Cu^II(pic)₂] (2), [Cu^I₂(L)₂](ClO₄)₂ (3) and [Cu^II₂(L)₂Cl₂](ClO₄)₂ (4), respectively, were isolated in pure form [where pic = picolinate]. All the complexes were characterized by physicochemical and spectroscopic methods. The product of the reactions are dependent on the counter anion of copper(II) salts used as reactant and on the reaction medium. Complexes 1 and 4 were obtained with nitrate and perchlorate copper(II) salts, respectively. On the other hand, C–S bond cleavage was observed in the reaction of L with copper(II) chloride to form in situ picolinic acid and complex 2. Dinuclear complexes 3 and 4 were separated out when copper(II) perchlorate was allowed to react with L in methanol and in acetonitrile, respectively, under aerobic condition. The X-ray diffraction analysis of the dinuclear complex 3 shows a highly distorted tetrahedral geometry about each copper ion. Complex 4 is converted to 3 in acetonitrile in presence of catechol. The spectral study of complex 4 with calf thymus DNA is indicative of a groove binding mode interaction.     

Synthesis,characterization, and DNA binding of ruthenium(II) complexes with 2-benzo[b] furan-2-yl-1H-imidazo[4,5f][1,10]phenanthroline as an intercalative ligand

DNA-binding properties of a number of ruthenium complexes with different polypyridine ligands are reported. The new polypyridine ligand BFIP (=2-benzo[b] furan-2-yl-1H-imidazo[4,5-f][1,10]phenanthroline) and its ruthenium complexes [Ru(bpy)₂BFIP]²⁺ (bpy = 2,2′-bipyridine), [Ru(dmb)₂BFIP]²⁺ (dmb = 4,4′-dimethyl-2,2′-bipyridine), and [Ru(phen)₂BFIP]²⁺ (phen = 1,10-phenanthroline) have been synthesized and characterized by elemental analysis, mass spectra, IR, UV-Vis, ¹H- and ¹³C-NMR, and cyclic voltammetry. The DNA binding of these complexes to calf-thymus DNA (CT-DNA) was investigated by spectrophotometric, fluorescence, and viscosity measurements. The results suggest that ruthenium(II) complexes bind to CT-DNA through intercalation. Photocleavage of pBR 322 DNA by these complexes was also studied, and [Ru(phen)₂BFIP]²⁺ was found to be a much better photocleavage agent than the other two complexes.     

In vitro binding studies of organotin(IV) complexes of 1,2-bis(1H-benzimidazol-2-yl)ethane-1,2-diol with CT-DNA and nucleotides (5′-GMP and 5′-TMP): Effect of the ancillary ligand on the binding propensity

The chiral benzimidazole ligand, 1,2-Bis(1H-benzimidazol-2-yl)ethane-1,2-diol, L, exhibiting coordination mode with an oxygen atom of alcohol group directed towards the metal ion and another -OH group with different molecular axis directed away from the metal center was utilized as a building block for organotin complexes [C₁₈H₁₉N₄O₂SnCl], [C₂₈H₂₃N₄O₂SnCl] and [C₅₂H₄₂N₄O₂Sn₂] (1-3). Complexes 1 and 3 exhibit a pentacoordinate geometry while the complex 2 reveals hexacoordinated environment around the Sn(IV) metal ions as evidenced by ¹¹⁹Sn NMR studies. The DNA binding ability of benzimidazole ligand and their organotin(IV) complexes 1-3 were examined by employing different biophysical methods. The absorption titration of the complexes with CT-DNA reveal significant hyperchromic effect together with strong bathochromic shift of 4-5 nm which infer substantial binding of the complexes with CT-DNA. The intrinsic binding constant K_b values of the complexes 1-3 were found to be 2.16 ± 0.04 × 10⁴, 3.47 ± 0.04 × 10⁴ and 4.60 ± 0.04 × 10³ M⁻¹, respectively, suggesting pronounced binding of complex 2 with DNA double helix. The mechanism of binding of the complexes was further ascertained by the interaction studies of these complexes with nucleotides (5′-GMP and 5′-TMP) using absorption spectroscopy suggesting a clear preference for 5′-GMP binding which was further authenticated by NMR (¹H and ³¹P NMR) studies.     

The effects of aggregation, protein binding and cellular incorporation on the photophysical properties of benzoporphyrin derivative monoacid ring A (BPDMA)

Absorption, fluorescence and laser flash photolysis spectroscopies were used to investigate the effects of self-aggregation, binding to human serum albumin and incorporation in cancer cells on the photophysics of benzoporphyrin derivative monoacid ring A (BPDMA). Aggregation of BPDMA has been studied in mixtures of methanol and phosphate-buffered saline (PBS). The extent of aggregation was dependent on dye concentration and solvent composition, becoming particularly marked in mixtures containing less than 30% methanol. A dimerization constant K_d or 9 × 10⁶ M⁻¹ was determined by fluorescence experiments for BPDMA in pure PBS. In addition to spectral modifications, aggregation induces a lowering of the fluorescence and intersystem crossing quantum yields. Human serum albumin binds BPDMA with an association constant K_b of 5.2 × 10⁵ M⁻¹ in PBS. When bound to HSA, BPDMA displays photophysical properties very similar to the monomer in organic solvents. The molar ratio [HSA]/[BPDMA] corresponding to complete binding of the dye was determined to be approximately 10. Efficient generation of the triplet state of BPDMA was also observed from aqueous cellular suspensions containing incorporated photosensitizer.     

Synthesis, crystal structure, hydrogen bonding and spectroscopy of transition-metal complexes with the ligand (N,N′-bis(2-pyridylmethyl)-1,3-propanediamine)

Six mononuclear complexes are reported with the tetradentate ligand N,N′-bis(2-pyridylmethyl)-1,3-propanediamine, (abbreviated as pypn) i.e. [Cu(pypn)(ClO₄)₂](H₂O)_1/2 (1), [Fe(pypn)Cl₂](NO₃) (2), [Zn(pypn)Cl](ClO₄) (3), [Co(pypn)(NCS)₂](ClO₄) (4), [Co(pypn)(N₃)₂](ClO₄) (5), [Zn(pypn)(NCS)₂] (6). The synthesis and X-ray crystal structures of all six compounds and their spectroscopic properties are presented.The geometry of the Cu²⁺, Co³⁺, Zn²⁺, Fe³⁺ ions is essentially octahedrally based, with the mm conformation (for Cu) and m_sf conformations for the other 3 metal ions; in compound 3 the geometry around the Zn²⁺ is distorted trigonal bipyramidal. The stabilisation of the crystal lattices is maintained by interesting, relative strong hydrogen bonds.     

Realization of unusual ligand binding motifs in metalated container molecules: synthesis, structures, and magnetic properties of the complexes [(LMe)Ni2(mu-L')]n+ with L'=NO3-, NO2-, N3-, N2H4, pyridazine, phthalazine, pyrazolate, and benzoate

A series of dinickel(II) complexes with the 24-membered macrocyclic hexaazadithiophenol ligand H(2)L(Me) was prepared and examined. The doubly deprotonated form (L(Me))(2-) forms complexes of the type [(L(Me))Ni2II(mu-L')](n+) with a bioctahedral N(3)Ni(II)(mu-SR)(2)(mu-L')Ni(II)N(3) core and an overall calixarene-like structure. The bridging coordination site L' is accessible for a wide range of exogenous coligands. In this study L'=NO(3)(-), NO(2)(-), N(3)(-), N(2)H(4), pyrazolate (pz), pyridazine (pydz), phthalazine (phtz), and benzoate (OBz). Crystallographic studies reveal that each substrate binds in a distinct fashion to the [(L(Me))Ni(2)](2+) portion: NO(2)(-), N(2)H(4), pz, pydz, and phtz form mu(1,2)-bridges, whereas NO(3)(-), N(3)(-), and OBz(-) are mu(1,3)-bridging. These distinctive binding motifs and the fact that some of the coligands adopt unusual conformations is discussed in terms of complementary host-guest interactions and the size and form of the binding pocket of the [(L(Me))Ni(2)](2+) fragment. UV/Vis and electrochemical studies reveal that the solid-state structures are retained in the solution state. The relative stabilities of the complexes indicate that the [(L(Me))Ni(2)](2+) fragment binds anionic coligands preferentially over neutral ones and strong-field ligands over weak-field ligands. Secondary van der Waals interactions also contribute to the stability of the complexes. Intramolecular ferromagnetic exchange interactions are present in the nitrito-, pyridazine-, and the benzoato-bridged complexes where J=+6.7, +3.5, and +5.8 cm(-1) (H=-2 JS(1)S(2), S(1)=S(2)=1) as indicated by magnetic susceptibility data taken from 300 to 2 K. In contrast, the azido bridge in [(L(Me))Ni(2)(mu(1,3)-N(3))](+) results in an antiferromagnetic exchange interaction J=-46.7 cm(-1). An explanation for this difference is qualitatively discussed in terms of bonding differences.     

Synthesis,crystal structure and properties of a copper(II) complex with the tripod ligand tris ( N -methylbenzimidazol-2-ylmethyl)amine and 4-hydroxycinnamate

A five-coordinate copper complex with the tripod ligand tris(N-methylbenzimidazol-2-ylmethyl)amine (Mentb) and 4-hydroxycinnamate, with the composition [Cu(Mentb)(4-hydroxycinnamate)](ClO₄)?·?0.5DMF, was synthesized and characterized by means of elemental analyses, electrical conductivities, thermal analyses, IR, and UV. The crystal structure of the copper complex has been determined by single-crystal X-ray diffraction, and shows that the Cu^II atom is bonded to a tris(N-methylbenzimidazol-2-ylmethyl)amine (Mentb) ligand and a 4-hydroxycinnamate through four N atoms and one O atom, giving a distorted trigonal-bipyramidal coordination geometry (τ?=?0.78), with approximate C₃ molecular symmetry. Cyclic voltammograms of the copper complex indicate a quasireversible Cu⁺²/Cu⁺ couple. Electron spin resonance data confirm the trigonal–bipyramidal structure and indicate g _∥?<?g _⊥ with a very small value of A _∥ (57?×?10^?4?cm^?1).