Crystal engineering via C—H⋯F and C—H⋯π interactions in two substituted indoles

The crystal structures of 1‐(4‐fluoro­phenyl)‐2‐phenyl‐4,5,6,7‐tetra­hydro‐1H‐indole, C₂₀H₁₈FN, and 1‐(4‐fluoro­phenyl)‐6,6‐di­methyl‐2‐phenyl‐4,5,6,7‐tetra­hydro‐1H‐indole, C₂₂H₂₂FN, have been determined in order to study the role of `organic fluorine' in crystal engineering. These mol­ecules pack in the crystal structure via different types of molecular motifs utilizing weak C—H⋯F and C—H⋯π interactions.     

Four tri­fluoro­methyl­nitro­benzene analogues

The crystal structures of four tri­fluoro­methyl­nitro­benzene analogues (CF₃)C₆H₃(NO₂)[C₄H₈N₂]R (where C₄H₈N₂ is piperazinyl and R is ethyl carboxyl­ate, CO₂C₂H₅, or phenyl, C₆H₅), have been determined, and their conformations and packing arrangements are compared. The four compounds are ethyl 4‐[4‐nitro‐2‐(tri­fluoro­methyl)­phenyl]­piperazine‐1‐car­boxyl­ate, (I), and ethyl 4‐[2‐nitro‐4‐(tri­fluoro­methyl)­phen­yl]piper­azine‐1‐carboxyl­ate, (II), both C₁₄H₁₆F₃N₃O₄, and 1‐­[4‐nitro‐2‐(tri­fluoro­methyl)­phenyl]‐4‐phenyl­piperazine, (III), and 1‐[2‐nitro‐4‐(tri­fluoro­methyl)­phenyl]‐4‐phenyl­piperazine, (IV), both C₁₇H₁₆F₃N₃O₂. All mol­ecules adopt a rod‐like conformation, while the asymmetric units of (II) and (IV) contain two unique mol­ecules that pack as monodirectional pairs. All mol­ecules pack with C—H⋯O/F close contacts to all but one of the O atoms and to five of the 18 F atoms.     

Inclusion compounds of 2,5‐di­phenyl­hydro­quinone

The crystal structures of three 1:2 inclusion compounds that consist of host mol­ecule 2,5‐di­phenyl­hydro­quinone (C₁₈H₁₄O₂) and the guest mol­ecules 2‐pyridone (C₅H₅NO), 1,3‐di­phenyl‐2‐propen‐1‐one (chalcone, C₁₅H₁₂O) and 1‐(4‐meth­oxy­phenyl)‐3‐phenyl‐2‐propen‐1‐one (4′‐methoxy­chal­cone, C₁₆H₁₄O₂) were determined in order to study the ability of guest mol­ecules in inclusion compounds to undergo photoreaction. All of the crystals were found to be photoresistant. The three inclusion compounds crystallize in triclinic space group . In each case, the host/guest ratio is 1:2, with the host mol­ecules occupying crystallographic centers of symmetry and the guest mol­ecules occupying general positions. The guest mol­ecules in each of the inclusion compounds are linked to the host mol­ecules by hydrogen bonds. In the inclusion compound where the guest mol­ecule is pyridone, the host mol­ecule is disordered so that the hydroxy groups are distributed between two different sites, with occupancies of 0.738 (3) and 0.262 (3). The pyridone mol­ecules form dimers via N—H⋯O hydrogen bonds.     

Two new polymorphs of di­phenyl(4‐pyridyl)­methyl methacryl­ate

The title compound (D4PyMA), C₂₂H₁₉NO₂, exhibits polymorphism after crystallization by slow evaporation from a binary mixture of chloro­form and hexane. Long needle‐like crystals have an orthorhombic structure (space group Fdd2), with one mol­ecule in the asymmetric unit, while small tablet‐like crystals exhibit a monoclinic crystal structure (space group P2₁/n), in which two independent but chemically identical mol­ecules comprise the asymmetric unit. The bond lengths and angles are normal, while the torsion angles around the –C—O– bond linking the di­phenyl(4‐pyridyl)methyl and methacryl­ate groups show the flexibility of the mol­ecule by way of packing effects. The two polymorphs both contain weak C—H⋯π and C—H⋯O/N contacts but have different conformations.     

Tri­phenyl(3,4,5‐tri­iodo­phenyl)­methane

The crystal structure of the title compound, alternatively called 1,2,3‐triiodo‐5‐(triphenylmethyl)benzene, C₂₅H₁₇I₃, is analysed in terms of I⋯I and I⋯π interactions and the herring‐bone T motif between phenyl groups. There are two mol­ecules in the asymmetric unit, denoted A and B. Inversion‐related A mol­ecules are connected via an I⋯π interaction (3.641 Å, to a C—C bond mid‐point) to form an I⋯π dimer, and these dimers are connected through symmetry‐independent B mol­ecules via I⋯I [3.5571 (15) Å] and I⋯π (3.561 Å, to a C—C bond mid‐point) interactions.     

2‐[(E)‐(4‐Chloro­phenyl)­methyl­ene­amino]‐N‐(X‐methyl­phenyl)‐4,5,6,7‐tetra­hydro‐1‐benzo­thio­phene‐3‐carbox­amide,where X = 2 and 3

The title compounds, both C₂₃H₂₁ClN₂OS, are isomeric, with (I) and (II) being the N‐3‐methyl­phenyl and N‐2‐methyl­phenyl derivatives, respectively. The dihedral angle between the 4‐chloro­phenyl group and the thio­phene ring in (II) [38.1 (1)°] is larger than that in (I) [7.1 (1)°], indicating steric repulsion between the chloro­phenyl and o‐toluidine groups in (II). In both compounds, an intramolecular N—H⋯N hydrogen bond forms a pseudo‐six‐membered ring, thus locking the molecular conformation. In the crystal structures, mol­ecules are connected via N—H⋯O hydrogen bonds, forming chains along the b axis in (I) and along the c axis in (II). Intermolecular C—H⋯O/S and π–π interactions are also observed in (II), but not in (I).     

2,4,6‐Tri­chloro­phenyl­iso­nitrile and 2,4,6‐tri­chloro­benzo­nitrile

The molecular structures of the title compounds, 2,4,6‐tri­chloro­phenyl­iso­nitrile (IUPAC name: 2,4,6‐tri­chloro­phenyl isocyanide), C₇H₂Cl₃N, and 2,4,6‐tri­chloro­benzo­nitrile, C₇H₂Cl₃N, are normal. The two structures are not isomorphous, but do contain similar two‐dimensional layers in which pairs of mol­ecules are held together by pairs of Cl?CN [3.245 (3) Å] or Cl?NC [3.153 (2) Å] interactions. The two‐dimensional isomorphism is lost through different layer‐stacking modes.     

p‐Nitro­phenyl isocyanide

Achiral p‐nitro­phenyl isocyanide, C₇H₄N₂O₂, crystallizes in the orthorhombic chiral space group P2₁2₁2₁. Attractive intermolecular interactions between the nitro O atoms and both aromatic H and nitro N atoms of neighbouring mol­ecules are observed. The O⋯N interaction is surprisingly strong [N⋯O = 2.869 (2) Å] compared with other aromatic nitro compounds.     

Supramolecular hydrogen‐bonded hexamers in two 5‐aryl‐3‐methyl‐1‐phenyl‐1,6,7,8‐tetra­hydro­pyrazolo­[3,4‐b][1,4]­diazepines

In both title compounds, i.e. 3‐methyl‐1,5‐di­phenyl‐1,6,7,8‐tetra­hydro­pyrazolo­[3,4‐b][1,4]­diazepine, C₁₉H₁₈N₄, (I), and 5‐(4‐chloro­phenyl)‐3‐methyl‐1‐phenyl‐1,6,7,8‐tetra­hydro­pyra­zolo­[3,4‐b][1,4]­diazepine, C₁₉H₁₇ClN₄, (II), an N—H?N hydrogen bond links six mol­ecules to form an R(30) ring. Compound (I) crystallizes in the R space group and (II) crystallizes in P with three mol­ecules in the asymmetric unit. The mol­ecule of (I) contains a disordered seven‐membered ring.     

5‐Cyano­tropolone and 5‐nitro­tropolone

The title compounds, 4‐hydroxy‐5‐oxo‐1,3,6‐cyclo­heptatriene‐1‐carbo­nitrile, C₈H₅NO₂, (I), and 2‐hydroxy‐5‐nitro‐2,4,6‐cyclo­heptatrien‐1‐one, C₇H₅NO₄, (II), have intra‐ and intermolecular hydrogen bonds. The structure of (II) contains two crystallographically independent mol­ecules, (IIa) and (IIb). An intermolecular π–π interaction and an intermolecular NO₂?π–π interaction are present in (I) and (II), respectively.     

4‐(4‐Chloro­benzyl­ideneamino)‐1,5‐dimethyl‐2‐phenyl‐1H‐pyrazol‐3(2H)‐one and 4‐(2‐chloro­benzyl­idene­amino)‐1,5‐dimethyl‐2‐phenyl‐1H‐pyrazol‐3(2H)‐one

The two title compounds, both with formula C₁₈H₁₆ClN₃O, are structurally similar Schiff bases derived from the condensation of 4‐chloro­benzaldehyde or 2‐chloro­benzaldehyde with 4‐amino­anti­pyrine in methanol solution. As expected, both compounds adopt trans configurations about the central C=N bonds. In the crystal structure of the 4‐chloro analogue, mol­ecules are linked through weak C—H⋯O hydrogen bonds, forming chains running along the a axis. In the crystal structure of the 2‐chloro analogue, mol­ecules are linked through weak C—H⋯O and C—H⋯Cl hydrogen bonds, forming layers parallel to the ab plane.     

p‐Decyl­phenyl isocyanide and p‐decyl­benzo­nitrile: isomorphous iso­nitrile/nitrile isomers

p‐Decyl­phenyl isocyanide, p‐C₁₀H₂₁–C₆H₄–NC or C₁₇H₂₅N, and p‐decyl­benzo­nitrile, p‐C₁₀H₂₁–C₆H₄–CN or C₁₇H₂₅N, are isomorphous. The mol­ecules lie in mirror planes, with the C₆ rings perpendicular to the mirror. The packing of both mol­ecules includes an aliphatic region, with close to ideal packing of the C₁₀H₂₁ chains, and an aromatic region, with phenyl ring–CN interactions. In addition, the CN ends of the mol­ecules are also involved in a CN⋯NC dipolar interaction.     

Three‐dimensional aggregation in 2‐hydroxy‐3‐iodo‐5‐nitrobenzaldehyde involving C—H⋯O,iodo–nitro and aromatic π–π stacking interactions,and isolated dimers in disordered 2,4‐diiodo‐6‐nitroanisole

In 2‐hydroxy‐3‐iodo‐5‐nitro­benz­aldehyde, C₇H₄INO₄, the mol­ecules are linked into sheets by a combination of C—H⋯O hydrogen bonds and two‐centre iodo–nitro interactions, and these sheets are linked by aromatic π–π stacking interactions. Molecules of 2,4‐di­iodo‐6‐nitro­anisole, C₇H₅I₂NO₃, are disordered, with the nitro group and one of the I substituents each occupying common sets of sites with 0.5 occupancy. The mol­ecules are linked into isolated centrosymmetric dimeric units by a single iodo–nitro interaction.     

Ethyl N‐[2‐(hydroxy­acetyl)­phenyl]­carbamate,ethyl N‐[2‐(hydroxy­acetyl)‐4‐iodo­phenyl]­carbamate and ethyl N‐[2‐(hydroxy­acetyl)‐4‐methyl­phenyl]­carbamate

In ethyl N‐[2‐(hydroxy­acetyl)phenyl]carbamate, C₁₁H₁₃NO₄, all of the non‐H atoms lie on a mirror plane in the space group Pnma; the mol­ecules are linked into simple chains by a single C—H⋯O hydrogen bond. The mol­ecules of ethyl N‐[2‐(hydroxy­acetyl)‐4‐iodo­phenyl]carbamate, C₁₁H₁₂INO₄, are linked into sheets by a combination of O—H⋯I and C—H⋯O hydrogen bonds and a dipolar I⋯O contact. Ethyl N‐­[2‐(hydroxy­acetyl)‐4‐methyl­phenyl]carbamate, C₁₂H₁₅NO₄, crystallizes with Z′ = 2 in the space group P; pairs of mol­ecules are weakly linked by an O—H⋯O hydrogen bond and these aggregates are linked into chains by two independent aromatic π–π stacking inter­actions.     

Inter­actions of thia­mine with polymeric halogenocadmate anions in the organic–inorganic hybrid compound (thia­minium)[Cd3Br4.4Cl3.6]

The structure of poly[3‐[(4‐amino‐2‐methylpyrimidin‐1‐ium‐5‐yl)meth­yl]‐5‐(2‐hydroxy­ethyl)‐4‐methyl­thia­zolium octa‐μ‐bromo/chloro­(4.4/3.6)‐tricadmate(II)], {(C₁₂H₁₈N₄OS)[Cd₃ Br_4.41Cl_3.59]}_n consists of hydrogen‐bonded thia­mine mol­ecules and polymeric cadmium bromide/chloride anions in an organic–inorganic hybrid fashion. The one‐dimensional anion ribbons are formed by edge‐sharing octa­hedra and vertex‐sharing tetra­hedra. Thia­mine mol­ecules adopting the S conformation are linked to anions via three types of inter­actions, namely an N(amino)—H⋯anion⋯thia­zolium bridging inter­action, an N(pyrimidine)—H⋯anion hydrogen bond and an O(hydr­oxy)—H⋯anion hydrogen bond.     

2,6‐Diiodo‐4‐nitrophenol, 2,6‐diiodo‐4‐nitrophenyl acetate and 2,6‐diiodo‐4‐nitroanisole: interplay of hydrogen bonds,iodo–nitro interactions and aromatic π–π‐stacking interactions to give supramolecular structures in one,two and three dimensions

In 2,6‐di­iodo‐4‐nitro­phenol, C₆H₃I₂NO₃, the mol­ecules are linked, by an O—H?O hydrogen bond and two iodo–nitro interactions, into sheets, which are further linked into a three‐dimensional framework by aromatic π–π‐stacking interactions. The mol­ecules of 2,6‐di­iodo‐4‐nitro­phenyl acetate, C₈H₅I₂NO₄, lie across a mirror plane in space group Pnma, with the acetyl group on the mirror, and they are linked by a single iodo–nitro interaction to form isolated sheets. The mol­ecules of 2,6‐di­iodo‐4‐nitro­anisole, C₇H₅I₂NO₃, are linked into isolated chains by a single two‐centre iodo–nitro interaction.     

3‐(4‐Acetyl­phenyl)‐1‐(4‐nitro­phenyl)­triazene

The crystal structure of the title compound, C₁₄H₁₂N₄O₃, shows that the stereochemistry about the N=N double bond of the N=N—N(H) moiety is trans. The whole mol­ecule is almost planar (r.m.s. deviation = 0.0654 Å), the interplanar angle between the phenyl rings being 0.7 (1)° and the largest interplanar angle being that between the phenyl ring and the nitro group of the 4‐nitro­phenyl substituent [11.5 (2)°]. Intermolecular N—H⋯O interactions between mol­ecules related by translation give rise to chains along the [110] and [10] directions, and these chains are held together by N⋯O π–π interactions. An unequal distribution of the double‐bond character among the N atoms suggests a delocalization of π electrons over the diazo­amine group and the adjacent aryl substituents.     

Mono­alkyl­ated 4′‐aryl‐substituted terpyridines

1‐Methyl‐2‐[4‐phenyl‐6‐(pyridinium‐2‐yl)­pyridin‐2‐yl]­pyridinium diperchlorate, C₂₂H₁₉N₃²⁺·2ClO₄⁻, (I), and 2‐[4‐(methoxy­phenyl)‐2,2′‐bipyridin‐6‐yl]‐1‐methyl­pyridinium iodide, C₂₃H₂₀N₃O⁺·I⁻, (II), both crystallize in the monoclinic space group P2₁/c. In contrast with the monocharged mol­ecule of (II), the doubly charged mol­ecule of (I) contains an additional protonated pyridine ring. One of the two perchlorate counter‐anions of (I) interacts with the cation of (I) via an N—H⋯O hydrogen bond. In (II), two mol­ecules related by a centre of symmetry are connected by weak π–π interactions, forming dimers in the crystal structure.     

2‐Meth­oxy‐4‐[(5‐oxo‐2‐phenyl‐4,5‐dihydro‐1,3‐oxazol‐4‐yl­idene)meth­yl]­phenyl 4‐methyl­benzene­sulfonate

Mol­ecules of the title compound, C₂₄H₁₉NO₆S, adopt the Z configuration and have a distorted tetra­hedral geometry around the S atom. The oxazolone, 2‐phenyl and methoxy­phenyl rings are approximately coplanar. The C atom between the methoxy­phenyl and oxazolone rings displays a distorted trigonal bonding geometry. Pairs of mol­ecules are linked into dimers through weak C—H⋯O hydrogen bonds.     

1‐(4‐Chloro­phenyl­sulfanyl)‐2‐nitro‐4‐(tri­fluoro­methyl)­benzene and 1‐(4‐chloro­phenyl­sulfanyl)‐4‐nitro‐2‐(tri­fluoro­methyl)­benzene

Two chemical isomers of 3‐nitro­benzotrifluoride, namely 1‐(4‐chloro­phenyl­sulfanyl)‐2‐nitro‐4‐(tri­fluoro­methyl)­benzene, C₁₃H₇ClF₃NO₂S, (I), and 1‐(4‐chloro­phenyl­sulfanyl)‐4‐nitro‐2‐(tri­fluoro­methyl)­benzene, C₁₃H₇ClF₃NO₂S, (II), have been prepared and their crystal structures determined with the specific purpose of forming a cocrystal of the two. The two compounds display a similar conformation, with dihedral angles between the benzene rings of 83.1 (1) and 76.2 (1)°, respectively, but (I) packs in P while (II) packs in P2₁/c, with C—H⋯O interactions. No cocrystal could be formed, and it is suggested that the C—H⋯O associations in (II) prevent intermolecular mixing and promote phase separation.