Inclusion compounds of 2,5‐di­phenyl­hydro­quinone

The crystal structures of three 1:2 inclusion compounds that consist of host mol­ecule 2,5‐di­phenyl­hydro­quinone (C₁₈H₁₄O₂) and the guest mol­ecules 2‐pyridone (C₅H₅NO), 1,3‐di­phenyl‐2‐propen‐1‐one (chalcone, C₁₅H₁₂O) and 1‐(4‐meth­oxy­phenyl)‐3‐phenyl‐2‐propen‐1‐one (4′‐methoxy­chal­cone, C₁₆H₁₄O₂) were determined in order to study the ability of guest mol­ecules in inclusion compounds to undergo photoreaction. All of the crystals were found to be photoresistant. The three inclusion compounds crystallize in triclinic space group . In each case, the host/guest ratio is 1:2, with the host mol­ecules occupying crystallographic centers of symmetry and the guest mol­ecules occupying general positions. The guest mol­ecules in each of the inclusion compounds are linked to the host mol­ecules by hydrogen bonds. In the inclusion compound where the guest mol­ecule is pyridone, the host mol­ecule is disordered so that the hydroxy groups are distributed between two different sites, with occupancies of 0.738 (3) and 0.262 (3). The pyridone mol­ecules form dimers via N—H⋯O hydrogen bonds.     

N‐(o‐Chloro­phenyl)‐2,5‐di­methyl­pyrrole‐3‐carb­aldehyde

Crystal structure analysis of the title compound, C₁₃H₁₂ClNO, reveals three crystallographically independent mol­ecules in the asymmetric unit. The main conformational difference between these mol­ecules is the orientation of the phenyl rings with respect to the pyrrole rings. The coplanar arrangement of the aldehyde groups attached to the pyrrole rings influences the pyrrole‐ring geometry. The C2—C3 and N1—C5 bonds are noticeably longer than the C4—C5 and N1—C2 bonds. Two independent mol­ecules of the title compound form dimers via intermolecular C—H⃛O hydrogen bonds [D⃛A = 3.400 (3) Å and D—H⃛A = 157°]. The perpendicular orientation of the phenyl and pyrrole rings of one independent mol­ecule and its symmetry‐related mol­ecule allows C—H⃛π interactions, with an H⃛centroid distance of 2.85 Å and a C—H⃛π angle of 155°. The distances between the H atom and the pyrrole‐ring atoms indicate that the C—H bond points towards one of the bonds in the pyrrole ring.     

Supramolecular structures of 5‐[3‐(4‐methyl­phenyl)‐ and 5‐[3‐(4‐chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione

2,2‐Di­methyl‐5‐[3‐(4‐methyl­phenyl)‐2‐propenyl­idene]‐1,3‐di­ox­ane‐4,6‐dione, C₁₆H₁₆O₄, crystallizes in the triclinic space group , with two mol­ecules in the asymmetric unit. These mol­ecules and a centrosymmetrically related pair, linked together by weak C—H?O hydrogen bonds, form a tetramer. 5‐[3‐(4‐Chloro­phenyl)‐2‐propenyl­idene]‐2,2‐di­methyl‐1,3‐dioxane‐4,6‐dione, C₁₅H₁₃ClO₄, also crystallizes in the triclinic space group , with one mol­ecule in the asymmetric unit. Centrosymmetrically related mol­ecules are linked together by weak C—H?O hydrogen bonds to form dimers which are further linked by yet another pair of centrosymmetrically related C—H?O hydrogen bonds to form a tube which runs parallel to the a axis.     

N‐(2‐Amino‐1,6‐di­hydro‐5‐nitro­so‐6‐oxopyrimidin‐4‐yl)‐l‐isoleucine–water (4/1): interplay of molecular and supramolecular structures

In the title compound, 2C₁₀H₁₅N₅O₄·0.5H₂O, there are two independent mol­ecules of the pyrimidinyl­isoleucine in general positions and a water mol­ecule lying on a twofold rotation axis. The bond lengths within the organic moieties demonstrate significant polarization of the electronic structure. Each of the organic mol­ecules participates in 12 intermolecular hydrogen bonds, of O—H?O and N—H?O types, while the water mol­ecule acts as a double donor and as a double acceptor of O—H?O hydrogen bonds. The organic components are linked by the hydrogen bonds into a single three‐dimensional framework, reinforced by the water mol­ecules.     

A new norkaurane‐γ‐lactone from Parinari sprucei

The title tetracyclic diterpenoid, 10,13,16,17‐tetra­hydroxy‐9‐methyl‐15‐oxo‐20‐norkaurane‐18,10‐carbolactone hemihydrate, C₂₀H₂₈O₆·0.5H₂O, is a plant metabolite from Parinari sprucei, part of the Venezuelan Amazon flora. The asymmetric unit consists of two nearly identical mol­ecules of the diterpenoid and one mol­ecule of water. Some of the geometric parameters reflect steric strain in the mol­ecule. The extended structure is characterized by hydrogen bonds and weaker hydrogen‐mediated interactions, which involve all of the hydroxy groups and propagate in sheets that coincide with the (002) family of planes. The water mol­ecule acts as a double hydrogen‐bond donor and single acceptor and thus plays a critical role in the pattern of intermolecular interactions.     

(±)‐6‐Benzyl‐3,3‐di­methyl­morpholine‐2,5‐dione and its 5‐mono­thio and 2,5‐di­thio derivatives

The morpholine ring of the title dione, C₁₃H₁₅NO₃, shows a boat conformation that is distorted towards a twist‐boat, with the boat ends being the two Csp³ atoms of the ring. The benzyl substituent is in the favoured `exo' position. In the mono­thione derivative, (±)‐6‐benzyl‐3,3‐di­methyl‐5‐thioxo­morpholin‐2‐one, C<sub>13</sub>H<sub>15</sub>NO<sub>2</sub>S, this ring has a much flatter conformation that is midway between a boat and an envelope, with the di­methyl end being almost planar. The orientation of the benzyl group is `endo'. The di­thione derivative, (±)‐6‐benzyl‐3,3‐di­methyl­morpholine‐2,5‐di­thione, C₁₃H₁₅N­OS₂, has two symmetry‐independent mol­ecules, which show different puckering of the morpholine ring. One mol­ecule has a flattened envelope conformation distorted towards a screw‐boat, while the conformation in the other mol­ecule is similar to that in the mono­thione derivative. Intermolecular hydrogen bonds link the mol­ecules in the three compounds, respectively, into centrosymmetric dimers, infinite chains, and dimers made up of one of each of the symmetry‐independent mol­ecules.     

4‐Hydro­xy‐3‐methoxy­benz­aldehyde 4,5‐di­azafluoren‐9‐yl­idene­hydrazone

The whole mol­ecule of the title compound, C₁₉H₁₄N₄O₂, is essentially planar, with a highly conjugated π system. In the crystal, the mol­ecules are packed as chains along the [011] direction connected by O—H?N intermolecular hydrogen bonds.     

2′‐(4‐Fluoro­phenyl)‐[1,2,3]­triazolo[4′,5′:16,17]­androst‐5‐en‐3β‐ol methanol hemisolvate

The asymmetric unit of the title compound, C₂₅H₃₀FN₃O·0.5CH₃OH, contains four symmetry‐independent steroid and two methanol mol­ecules. The conformations of the independent steroid mol­ecules are very similar. Intermolecular O—H⋯O hydrogen bonds create two independent chains, each of which links two of the independent steroid mol­ecules plus one methanol mol­ecule via a co‐operative O—H⋯O—H⋯O—H pattern. Intermolecular C—H⋯O and C—H⋯F interactions are also observed.     

1‐(2‐Hydro­xy‐4‐methoxy­phenyl)‐3‐(2,3,4‐tri­methoxy­phenyl)­prop‐2‐en‐1‐one

The title compound, C₁₉H₂₀O₆, crystallizes in the centrosymmetric space group P2₁/c with one mol­ecule in the asymmetric unit. The mol­ecule is approximately planar and the dihedral angle between the phenyl rings is 11.0 (1)°. The H atoms of the central propenone group are trans. There is an intramolecular O—H⃛O hydrogen bond and the mol­ecules are crosslinked by four intermolecular C—H⃛O hydrogen bonds, producing a three‐dimensional network.     

2,4,4‐Tri­methyl‐2‐phenyl‐3‐pentanone oxime

The title compound, C₁₄H₂₁NO, has two mol­ecules in the asymmetric unit. Each mol­ecule forms hydrogen‐bonded dimers about inversion centers via O—H?N hydrogen bonds between oxime groups. The N—O distances in the oxime groups are 1.4160 (15) and 1.4131 (14) Å.     

4‐Acetamido‐3,3,5,5‐[2H4]‐2,2,6,6‐tetra­([2H3]methyl)piperidin‐1‐yloxyl 0.33‐hydrate

The asymmetric unit of the title compound, C₁₁H₅D₁₆N₂O₂·0.33H₂O, is formed by three crystallographically independent piperidin‐1‐yloxyl mol­ecules and a mol­ecule of water. The mol­ecules are crosslinked by nine hydrogen bonds into layers parallel with the ac plane. The water mol­ecule contributes to the stability of the low‐symmetry arrangement by four hydrogen bonds.     

2,3‐Difluoro‐4‐formyl­phenyl­boronic acid

The mol­ecule of the title compound, 2,3‐F₂‐4‐(CHO)C₆H₂B(OH)₂ or C₇H₅BF₂O₃, contains a formyl group coplanar with the benzene ring. The boronic acid group is twisted with respect to the benzene ring plane. The mol­ecules are organized into infinite chains via inter­molecular O—H⋯O hydrogen bonds. These chains are additionally connected via strong O—H⋯O hydrogen bonds, producing a folded layer structure perpendicular to the a axis. These layers are paired due to B⋯F inter­actions.     

tert‐Butyl (3S,6R,9R)‐(5‐oxo‐3‐{[1(R)‐phenyl­ethyl]­carbamoyl}‐1,2,3,5,6,7,8,8a‐octa­hydro­indolizin‐6‐yl)­carbamate monohydrate at 95 K

The asymmetric unit of the title compound, C₂₂H₃₁N₃O₄·H₂O, incorporates one water mol­ecule, which is hydrogen bonded to the 3‐oxo O atom of the indolizidinone system. The two rings of the peptidomimetic mol­ecule are trans‐fused, with the six‐membered ring having a slightly distorted half‐chair conformation and the five‐membered ring having a perfect envelope conformation. The structure is stabilized by intermolecular O—H?O interactions between the water and adjacent peptide mol­ecules, and by N—H?O interactions between the peptide mol­ecules, which link the mol­ecules into infinite chains.     

4,5‐Diazafluoren‐9‐ol

The title compound, C₁₁H₈N₂O, has two crystallographically independent mol­ecules in the crystal. Each mol­ecule is basically planar except for the O atom. The two N atoms in the mol­ecule show different behaviour as hydrogen‐bonding acceptors. One of them is involved in intermolecular O—H?N hydrogen bonds which stabilize the crystal packing.     

(3R,4aS,5R)‐3‐Hydro­xy‐5‐isopropenyl‐3,8‐di­methyl‐4,4a,5,6‐tetra­hydro‐2(3H)‐naphthalenone

In the crystal structure of C₁₅H₂₀O₂, mol­ecules are associated by intermolecular hydrogen bonds between the hydroxy function and a keto group [O?O 2.770 (2) Å], forming chains along the [100] direction in the crystal. Both six‐membered rings in the decalin unit adopt envelope conformations; one section of the mol­ecule, encompassing the extended conjugation of a C=C double bond with an enone functionality [C=C—C=O = 175.6 (2)° and C=C—C=C = 176.6 (2)°], is flat, whilst the rest of the mol­ecule is folded relative to the constrained part. The stereochemistry was determined from the R‐(–)‐carvone starting material.     

anti‐2‐Hydr­oxy‐2‐methyl‐1‐tetra­lone oxime: X‐ray and density functional theory study

Crystals of the title racemic compound, C₁₁H₁₃NO₂, consist of two types of mol­ecules (conformers); one mol­ecule has an exocyclic OH group in an equatorial position and the other has this group in an axial position. Consequently, the hydrogen‐bond schemes for the two mol­ecules are different. The mol­ecules with equatorial OH groups create infinite parallel chains (formed by the same enantio­mer), connected by centrosymmetric dimers of mol­ecules (of mixed enantio­mers), both with axial OH groups. Possible inter­conversion of the conformers and the flexibility of the mol­ecule were studied by means of different MP2 and density functional theory (DFT) methods. The optimization of the structure by the DFT method confirmed the types of the hydrogen bonds.     

Bis(μ‐1,10‐phenanthrolin‐2‐olato‐κ3N,N′:O)­dicopper(I)(Cu—Cu) monohydrate

The crystal structure of the title compound, [Cu₂(C₁₂H₇­N₂O)₂]·H₂O, shows that this dinuclear complex has shorter Cu—N, Cu—O and Cu—Cu distances within the coordination sphere than similar reported complexes. The complex mol­ecule is located on a centre of symmetry and the water mol­ecule is on a twofold axis of the space group C2/c. The discrete complex mol­ecules are extended into a two‐dimensional supramolecular array viaπ–π stacking interactions, intermolecular Cu⋯Cu interactions and C—H⋯O hydrogen bonds.     

3‐[(2‐Oxo‐1‐naphthylidene)methyl­amino]­benzoic acid

The title compound, C₁₈H₁₃NO₃, exists as a keto­amino tautomer implying a fairly short N—H?O intramolecular hydrogen bond between the 2‐naphthalenone and amino moieties [N?O 2.531 (3) Å] which is enhanced by the π‐electron delocalization effect. The naphthald­imine and 3‐carboxy­phenyl fragments are inclined at an angle of 4.41 (7)°, so the mol­ecule is almost planar. The mol­ecules are connected by intermolecular O—H?O hydrogen bonds between the carboxy and keto O atoms, forming infinite chains around the twofold screw axes parallel to b .     

Polymorphism and solvolysis of 2‐cyano‐3‐[4‐(N,N‐diethyl­amino)­phenyl]­prop‐2‐ene­thio­amide

Two new polymorph forms, (Ia) and (Ib), of the title compound, C₁₄H₁₇N₃S, and its solvate with aceto­nitrile, C₁₄H₁₇N₃S·0.25C₂H₃N, (Ic), have been investigated. Crystals of the two polymorphs were grown from different solvents, viz. ethanol and N,N‐di­methyl­form­amide, respectively. The polymorphs have different orientations of the thio­amide group relative to the CN substituent, with s‐cis and s‐trans geometry of the C=C—C=S diene fragment, respectively. Compound (Ic) contains two independent mol­ecules, A and B, with s‐cis geometry, and the solvate mol­ecule lies on a twofold axis. The core of each mol­ecule is slightly non‐planar; the dihedral angles between the conjugated C=C—CN linkage and the phenyl ring, and between this linkage and the thio­amide group are 13.4 (2) and 12.0 (2)° in (Ia), 14.0 (2) and 18.2 (2)° in (Ib), 2.3 (3) and 12.7 (4)° in molecule A of (Ic), and 23.2 (3) and 8.1 (4)° in molecule B of (Ic). As a result of strong conjugation between donor and acceptor parts, the substituted phenyl rings have noticeable quinoid character. In (Ib), there exists a very strong intramolecular steric interaction (H⋯H = 1.95 Å) between the bridging and thio­amide parts of the mol­ecule, which makes such a form less stable. In the crystal structure of (Ia), intermolecular N—H⋯N and N—H⋯S hydrogen bonds link mol­ecules into infinite tapes along the [10] direction. In (Ib), such intermolecular hydrogen bonds link mol­ecules into infinite (101) planes. In (Ic), intermolecular N—H⋯N hydrogen bonds link mol­ecules A and B into dimers, which are connected via N—H⋯S hydrogen bonds and form infinite chains along the c direction.     

Di‐μ‐iodo‐bis{[1,1′‐methyl­enebis(3,5‐dimethyl‐1H‐pyrazole‐κN2)]copper(I)}

In the title compound, [Cu₂I₂(C₁₁H₁₆N₄)₂], each of the two crystallographically equivalent Cu atoms is tetrahedrally coordinated by two N atoms from one 1,1′‐methyl­ene­bis(3,5‐di­methyl‐1H‐pyrazole) ligand and two bridging iodide anions. The mol­ecule has a crystallographic center of symmetry located at the mid‐point of the Cu·Cu line. One H atom of the CH₂ group of the 1,1′‐methyl­ene­bis(3,5‐di­methyl‐1H‐pyrazole) ligand interacts with an iodide ion in an adjacent mol­ecule to afford pairwise intermolecular C—H·I contacts, thereby forming chains of mol­ecules running along the [101] direction.