HPLC Separation of Sugar Anomers in a Very Low Temperature Region

Abstract

High-performance liquid chromatographic (HPLC) separation of sugar anomers was carried out on -NH₂ columns in acidic eluents in a very low temperature region. Chromatogram patterns were found to show remarkable changes with decreasing column temperatures. This was attributed to the fact that interconversion between sugar anomers (mutarotation) occurred during the chromatographic process. Since mutarotation was suppressed in a very low temperature region, pyranose anomers of each mono- and di-saccharide were separated completely. Furanose anomers were also separated from an equilibrium mixture, and the necessary conditions for complete separation of furanose anomers were discussed.     

Discrimination between coupling networks of glucopyranosides varying at a single stereocenter using two-dimensional vibrational correlation spectroscopy

A combination of two-dimensional infrared (2DIR) correlation spectroscopy, linear absorption spectroscopy, and density functional theory quantum calculations was used to identify characteristic spectral features of two anomers of acetylated 2-azido-2-deoxy-D-glucopyranose. While the linear absorption spectra for the α and β anomers were distinctive, a substantial difference between them was observed only in the spectral region below 1200 cm(-1). The infrared correlation spectra of the two anomers differed significantly, even in regions where their linear absorption spectra were similar. Very substantial differences were found for the N≡N/C=O stretch mode region of the 2DIR correlation spectrum, indicating differences in the anharmonic coupling of the N≡N stretching mode of the equatorially oriented N(3) group with the CO modes when the C(1) ester was either in the axial (α anomer) or equatorial (β anomer) orientation. In addition, the energy transport patterns originating from the excited N≡N stretching mode were found to be different for the two anomers; up to a 1.8-fold difference in the energy transport times was observed for the probed modes of the same type in the two anomers. The results demonstrate the capability of 2DIR and relaxation-assisted 2DIR (RA 2DIR) spectroscopies to provide unique spectroscopic data specific to sugar anomers that vary at a single stereochemical center. These methods identify unique coupling networks within individual sugar stereochemical units and demonstrate the potential to identify a number of stereochemical differences among them.     

Studies on indium-mediated additions to lactones: synthesis of 2-deoxy-2-substituted-3-ulosonic acids

The indium-mediated Reformatsky reaction of a mannose-derived lactone with α,α-disubstituted-α-bromo esters yielded the corresponding ulosonic acid esters as mixtures of anomers. In contrast, the reaction with α-monosubstituted-α-bromo esters is highly stereoselective and afforded a single anomer of the corresponding (2S)-ulosonic acid esters. A mechanistic proposal for the reaction and an explanation of its outcome is discussed. The indium-mediated Reformatsky reaction of the mannose-derived lactone with 2-bromo-lactones was also achieved and the products obtained were consistent with those of our proposed mechanism in all cases. Moreover, indium-mediated allylation of the model sugar lactone was also investigated.     

Selectivity issues in targeted metabolomics: Separation of phosphorylated carbohydrate isomers by mixed-mode hydrophilic interaction/weak anion exchange chromatography

Phosphorylated carbohydrates are important intracellular metabolites and thus of prime interest in metabolomics research. Complications in their analysis arise from the existence of structural isomers that do have similar fragmentation patterns in MS/MS and are hard to resolve chromatographically. Herein, we present selective methods for the liquid chromatographic separation of sugar phosphates, such as hexose and pentose phosphates, 2‐ and 3‐phosphoglycerate, dihydroxyacetone phosphate and glyceraldehyde 3‐phosphate, as well as glucosamine 1‐ and 6‐phosphate utilizing mixed‐mode chromatography with reversed‐phase/weak anion‐exchangers and a charged aerosol detector. The best results were obtained when the reversed‐phase/weak anion‐exchanger column was operated under hydrophilic interaction liquid chromatography elution conditions. The effects of various chromatographic parameters were examined and are discussed on the basis of a simple stoichiometric displacement model for explaining ion‐exchange processes. Employed acidic conditions have led to the complete separation of α‐ and β‐anomers of glucose 6‐phosphate at low temperature. The anomers coeluted in a single peak at elevated temperatures (>40°C) (peak coalescence), while at intermediate temperatures on‐column interconversion with a plateau in‐between resolved anomer peaks was observed with apparent reaction rate constants between 0.1 and 27.8×10^?4 s^?1. Dynamic HPLC under specified conditions enabled to investigate mutarotation of phosphorylated carbohydrates, their interconversion kinetics, and energy barriers for interconversion. A complex mixture of six hexose phosphate structural isomers could be resolved almost completely.     

A new hybrid (experimental–theoretical) quantitative method for detection of relative anomer concentrations in water

A novel and inexpensive hybrid (combined experimental and theoretical) approach was used to quantitatively identify anomer proportions of d-glucose, d-galactose and d-mannose in water. The study involves three parts: recording of experimental FT-IR spectra of monosaccharides in water, calculation of vibrational frequencies of all stable anomers of monosaccharides and regression analysis of theoretical and experimental intensities. No expensive experimental processes and high-level calculations were needed during the study. The results were compared with the data from pure experimental and molecular dynamic studies. It has been concluded that in water while d-glucose and d-mannose have two stable anomers, α-pyranose and β-pyranose, d-galactose has four stable anomers, α-pyranose, β-pyranose, α-furanose and β-furanose. Comparison of detected results with the literature data showed that the developed method is working for the quantitative detection of anomer proportions of monosaccharides in water.     

Ab Initio computed molecular structures and energies of the conformers of glucose

Ab initio computations indicate the existence of several stable and some unstable conformers in isolated α and β glucose molecules. All of the lower-energy conformers exhibit a strikingly regular pattern of internal hydrogen bonding. Five such stable structures have been identified for each of the α and β anomers, differing primarily in the orientation of the CH₂OH group. In each conformer, the α anomer is predicted to be lower in energy than the corresponding conformers of β anomer. The difference is about 2 kcal/mol in the 4-31G basis but only 0.4 kcal/mol in the 6-31G* basis. It is found that the electronic contributions to the free energy difference stabilize the α anomer while the nuclear motion contributions stabilize the β anomer. The implications of these predictions and the future investigations required to understand the relative stabilities of the two anomers are pointed out. © 1992 by John Wiley & Sons, Inc.     

Fast atom bombardment mass spectrometric study of alkali metal cationized unsaturated C-glycosides

Fast atom bombardment mass spectrometry of alkali metal cationized unsaturated C-glycosides is a useful method for the determination of the molecular masses of these compounds. The mass-analyzed ion kinetic energy and collision-activated dissociation mass-analyzed ion kinetic energy spectra of the pairs of anomers are distinguishable and are characteristic of each anomer.     

Still Elusive – Pd(II)-Mediated Base Pairing by an Acetophenone Oxime Palladacycle within 15N-Labelled Double-Helical Oligonucleotides

Both α and β anomers of an acetophenone C-nucleoside were synthesized and incorporated in the middle of short oligodeoxynucleotides. The ketone oligonucleotides were converted to ¹⁵N-labelled oxime oligonucleotides by treatment with ¹⁵N-hydroxylamine and, finally, cyclopalladated by treatment with lithium tetrachloropalladate. Comparison of the UV melting profiles of duplexes bearing the β anomer of either the palladacyclic or the metal-free oxime C-nucleoside suggested formation of a stable Pd(II)-mediated base pair, especially with adenine or thymine as the base pairing partner. Melting profiles of the corresponding duplexes bearing the α anomer were much more convoluted, precluding meaningful comparison. ¹⁵N NMR spectra were obtained for the β anomeric oxime oligonucleotide as well as its palladacyclic derivative but the signals unfortunately diminished below detection limit when the latter was hybridized with a complementary strand placing a ¹⁵N3-labelled thymine opposite to the palladacyclic residue.     

Determination of the anomeric configuration of 2′-deoxy-D-ribonucleosides by 1H NMR and by crystallographic studies of a novel 2′-deoxy C-nucleoside

2′-Deoxy-D-ribonucleoside analogs of biologically active 2-β-D-ribofuranosylthiazole-4-carboxamide were synthesized and the structure of the β anomer was determined by X-ray crystallography and ′¹H nmr. 2′-Methylene protons of α- and β-deoxyribonucleosides were observed to exhibit characteristic patterns in the ¹H nmr which was used to distinguish between the two anomers. The method could be used to determine the anomeric configuration of both N- and C-2′-deoxyribonucleosides.     

Comparison of the two anomers of methyl 2‐(N‐benzyl­amino)‐2,3‐di­deoxy‐4,6‐O‐phenyl­methyl­ene‐3‐C‐phenyl­sulfonyl‐d‐gluco­pyran­oside

The title compounds, the α and β anomers of methyl 2‐(N‐benzyl­amino)‐2,3‐di­deoxy‐4,6‐O‐phenyl­methyl­ene‐3‐C‐phenyl­sulfonyl‐d ‐gluco­pyran­oside, C₂₇H₂₉NO₆S, belong to the class of deoxy­amino‐­sugars prepared by the addition of amines at C2. The endocyclic bond lengths of the pyran­ose ring in the α anomer are shorter than the corresponding bonds in the β anomer. The pyran­ose ring is in the chair form in the former, while it is in the boat form in the latter. These observed differences could be attributed to the C2 substitution of a bulky group. The phenyl­sulfonyl and benzyl­amino groups are in equatorial positions in the α anomer, while the benzyl­amino group is axial in the β anomer.     

Synthesis and Structural Assignment of 1-O-Acetyl-2,3,5-tri-O-benzoyl-4-(thymin-1-yl)-α-l-lyxofuranose

Abstract

Analogues of nucleosides in which the nucleobase is fixed onto the C-4 of the sugar moiety are generally prepared either from 4,5-unsaturated sugar derivatives or via a formaldehyde condensation.¹ We tested the furanosyl bromide reactivity of 1 ² towards a series of nucleophiles, mostly azides or cyanides, without success. Conversely, the nucleosidation of 1 using 5-methyl-2,4-bis(trimethyl-silyloxy)pyrimidine in the presence of stannic chloride took place at the second anomeric position (C-4) and led to the isolation in acceptable yield (47%) of a unique anomer 2 (Scheme 1).     

From Pyranosuloses and Pyranosenuloses to Deoxy Hydroxyamino Sugars

Abstract

Deoxy hydroxyamino sugars represent a potentially useful series of sugar analogs owing mainly to the fact that they oxidize spontaneously to nitroxide free radicals to give spin-labeled sugar derivatives whose structure is very close to that of the parent sugar.₃ We describe herin two synthetic pathways towards these compounds, reduction of sugar oximes and conjugate addition to enolones derivatives, both in the pyranose series.     

How Does Solvation Affect the Binding of Hydrophilic Amino Saccharides to Cucurbit[7]uril with Exceptional Anomeric Selectivity?

Cucurbit[7]uril (CB[7]) is known to bind strongly to hydrophilic amino saccharide guests with exceptional α‐anomer selectivities under aqueous conditions. Single‐crystal X‐ray crystallography and computational methods were used to elucidate the reason behind this interesting phenomenon. The crystal structures of protonated galactosamine (GalN) and glucosamine (GluN) complexes confirm the inclusion of α anomers inside CB[7] and disclose the details of the host–guest binding. Whereas computed gas‐phase structures agree with these crystal structures, gas‐phase binding free energies show preferences for the β‐anomer complexes over their α counterparts, in striking contrast to the experimental results under aqueous conditions. However, when the solvation effect is considered, the binding structures drastically change and the preference for the α anomers is recovered. The α anomers also tend to bind more tightly and leave less space in the CB[7] cavity toward inclusion of only one water molecule, whereas loosely bound β anomers leave more space toward accommodating two water molecules, with markedly different hydrogen‐bonding natures. Surprisingly, entropy seems to contribute significantly to both anomeric discrimination and binding. This suggests that of all the driving factors for the strong complexation of the hydrophilic amino saccharide guests, water mediation plays a crucial role in the anomer discrimination.     

Anomerization reaction of bare and microhydrated d‐erythrose via explicitly correlated coupled cluster approach. Two water molecules are optimal

We present a comprehensive benchmark computational study which has explored a complete path of the anomerization reaction of bare d ‐erythrose involving a pair of the low‐energy α‐ and β‐furanose anomers, the former of which was observed spectroscopically (Cabezas et al., Chem. Commun. 2013, 49, 10826). We find that the ring opening of the α‐anomer yields the most stable open‐chain tautomer which step is followed by the rotational interconversion of the open‐chain rotamers and final ring closing to form the β‐anomer. Our results indicate the flatness of the reaction's potential energy surface (PES) corresponding to the rotational interconversion path and its sensitivity to the computational level. By using the explicitly correlated coupled cluster CCSD(T)‐F12/cc‐pVTZ‐F12 energies, we determine the free energy barrier for the α‐furanose ring‐opening (rate‐determining) step as 170.3 kJ/mol. The question of the number of water molecules (n ) needed for optimal stabilization of the erythrose anomerization reaction rate‐determining transition state is addressed by a systematic exploration of the PES of the ring opening in the α‐anomer‐(H₂O)_n and various β‐anomer‐(H₂O)_n (n = 1–3) clusters using density functional and CCSD(T)‐F12 computations. These computations suggest the lowest free energy barrier of the ring opening for doubly hydrated α‐anomer, achieved by a mechanism that involves water‐mediated multiple proton transfer coupled with the furanose C O bond breakage. Among the methods used, the G4 performed best against the CCSD(T)‐F12 reference at estimating the ring‐opening barrier heights for both the hydrated and bare erythrose conformers. Our results for the hydrated species are most relevant to an experimental study of the anomerization reaction of d ‐erythrose to be carried out in microsolvation environment. © 2016 Wiley Periodicals, Inc.     

Vibrational spectra and stereochemistry of mono- and polysaccharides

A comparative study of the IR and Raman spectra of D-glucose anomers is reported. The spectra were found to differ between the anomers, despite the absence of symmetry elements in the anomer molecules. The results of theoretical calculations are systematized; it was found that the skeletal CiOi or CiO(i+1) (i=1, 2, 3, 4, 5) bond is characterized by a specific set of frequencies of normal vibrations, which have predominant contributions from the vibrations of atomic groups involving these bonds to the potential energy distribution (PED). The frequencies of normal vibrations with the major contribution to PED from CO and CC bonds are well separated and differ between the D-glucose anomers. The C5C6 bond has the greatest number of normal vibrations with predominant contributions to PED. Model calculations of vibrational spectra are reported for D-glucose anomers with modified (β→α and α→β) conformations of the CH₂OH group. B. I. Stepanov Institute of Physics, Belarus Academy of Sciences. Institute of Low Temperatures and Structural Studies, Polish Academy of Sciences, Wroclaw. Translated fromZhurnal Strukturnoi Khimii, Vol. 36, No. 2, pp. 322–329, March–April, 1995. Translated by L. Smolina     

Synthesis and Conformational Analysis of 1, 2-Anhydro-3, 4-di-O-benzyl-6-deoxy-α-D-glucopyranose

Abstract

The title 1, 2-anhydro sugar (10) was synthesized from methyl 4, 6-O-benzylidene-α-D-glucopyranoside or from 1, 2-O-ethylidene-α-D-glucopyranose. The key intermediate for the synthesis was 2-O-acetyl-3, 4-di-O-benzyl-6-deoxy-β-D-glucopyranosyl fluoride (8)which was transformed into the target compound by ring closure with potassium tert-butoxide. Calculations by the modified Karplus equation from vicinal coupling constants of 10 suggested that the conformation of 10 was almost an ideal ⁴ H ₅ for the pyranose ring. Conformational analysis for the 1, 2-O-(R)-ethylidene intermediates 17 and 20 revealed that their pyranose ring basically adopted a B₂,₅ conformation.     

NMR assignments and the acid–base characterization of the pomegranate ellagitannin punicalagin in the acidic pH-range

In exploring the capability of nuclear magnetic resonance (NMR) spectroscopy for pomegranate juice analysis, the eight aromatic singlet resonances of α- and β-punicalagin were clearly identified in the ¹H NMR spectra of juice samples. The four downfield resonances were found to be sensitive to small pH changes around pH 3.50 where the NMR spectra of the juice samples were recorded. To understand this unusual behavior, the ¹H and ¹³C resonance assignments of the punicalagin anomers were determined in aqueous solution and pH titrations with UV and ¹H NMR detection carried out to characterize the acid–base properties of punicalagin over the pH range 2–8. Simultaneous fitting of all of the pH-sensitive ¹H NMR signals produced similar but significantly different pK _a values for the first two deprotonation equilibria of the gallagic acid moiety of the punicalagin α- (pK _a1?=?4.57?±?0.02, pK _a2?=?5.63?±?0.03) and β- (pK _a1?=?4.36?±?0.01, pK _a2?=?5.47?±?0.02) anomers. Equivalent pK _a values, (α?:?6.64?±?0.01, β?:?6.63±?0.01) were measured for the third deprotonation step involving the ellagic acid group, in good agreement with a prior literature report. The punicalagin anomer equilibrium readjusts in parallel with the proton dissociation steps as the pH is raised such that β-punicalagin becomes the most abundant anomer at neutral pH. The unusual upfield shifts observed for the glucose H3 and H5 resonances with increasing pH along with the shift in the α/β anomer equilibrium are likely the consequence of a conformational rearrangement.

Sugar-pendant diamines

A set of 1,3-propanediamine derivatives connected to carbohydrates (5) has been prepared in four steps from peracetylated sugar and 1,3-dibromo-2-propanol in 60-73% yields. D-Glucose, D-mannose, D-galactose, D-xylose, D-ribose, and maltose are utilized as sugar molecules in this work. The diamine moiety was connected to the C1 carbon of the glycopyranose ring via an O-glycoside bond. All of the anomeric configurations and sugar puckering conformations, except in the D-maltose derivative, were determined by X-ray crystallography of the diazido or dibromo precursors. While glycosidation of peracetylated galactopyranose with 1,3-dibromo-2-propanol in the presence of boron trifluoride afforded both anomers, the neighboring group participation of the 2-acetoxy group yielded a single anomer for the other substrates. This method has been used to synthesize a library of sugar-pendant diamines including an OH-protected derivative (6), and an N,N'-diisopropyl-substituted derivative (7). A similar series of reactions using 2,3-dibromo-1-propanol gave ethylenediamine-type derivatives (11), and bis(bromomethyl)bis(hydroxymethyl)methane (12) gave bisglucose-pendant derivatives (16).     

Deoxy-nitrosugars. 5th Communication. The anomeric effect of the nitro group

The 1-deoxy-1-nitro-D -manno-pyranose 4 was transformed into the nitroolefin 5 and hence into the anomeric 1,2-dideoxy-1-nitro-3, 4, 6-tri-O-benzyl-D -arabino-hexopyranoses ( 3a and 3b ; cf. the Scheme). Conformational analysis of 1-benzyloxy-2-nitroethane ( 6 ) by ¹H-NMR spectroscopy (Fig. 2) showed the synclinal conformation to be more stable than the antiperiplanar one by about 1.4 kcal/mol (attractive gauche-effect). This gauche-effect favours the 1-deoxy-1-nitro-2, 3, 4, 6-tetra-O-benzyl-β-D -manno-hexopyranose ( 1b ) possessing an equatorial nitro group, which is, however, qualitatively the less stable anomer. The relative concentrations of the anomers of 1 and 3 , respectively, were determined by ¹H-NMR spectroscopy after base catalyzed equilibration at 37° in CHCl₃-solution (Table). Anomeric effects for the nitro group of approximately 2.4 kcal/mol in 3 and of approximately 3.4 kcal/mol in 1 were calculated.     

Regiospecific Anomerisation of Acylated Glycosyl Azides and Benzoylated Disaccharides by Using TiCl4

Chelation induced anomerisation is promoted when Lewis acids, such as TiCl₄ or SnCl₄, coordinate to the pyranose ring oxygen atom and another site, giving rise to endocyclic cleavage and isomerisation to the more stable anomer. In this research regiospecific site‐directed anomerisation is demonstrated. TiCl₄ (2.5 equiv) was employed to induce anomerisation of 15 glycosyl azide and disaccharide substrates of low reactivity, and high yields (>75 %) and stereoselectivies (α/β>9:1) were achieved. The examples included glucopyranuronate, galactopyranuronate and mannopyranuronate as well as N‐acetylated glucopyranuronate and galactopyranuronate derivatives. A disaccharide with the α1→4 linkage found in polygalacturonan was included. The use of benzoylated saccharides was found to be important in disaccharide anomerisation as attempts to isomerise related acetyl protected and 2,3‐carbonate protected derivatives were not successful.