Vibrational spectral investigation of four second order nonlinear optical azobenzene-containing materials: a combination of experimental and density functional theoretical (DFT) study

In this work, four-second order nonlinear optical (NLO) azobenzene-containing materials are studied in-depth by using vibrational spectra and density functional theory (DFT). The Fourier transform infrared (FT-IR) spectra and FT-Raman spectra are recorded in the range of 50-4000 and 100-3600cm(-1), respectively. Meanwhile, the DFT computations are performed at B3LYP/6-31G (d, p) level to derive equilibrium geometry, vibrational wavenumbers and intensities, and first hyperpolarizability, and the scaled theoretical wavenumbers are also shown to be in good agreement with experimental data. The calculated results show that these four azobenzene-containing compounds are good materials and the compound with nitro substituent groups possesses a larger first molecular hyperpolarizability (β) value. Moreover, the simultaneous infrared and Raman activation of R1 group and CC stretching suggest that the charge transfer interaction might occur between the R1 group and phenyl ring, and the HOMO-LUMO gap analysis also supports this viewpoint.     

A conformational study of hydroxylated isoflavones by vibrational spectroscopy coupled with DFT calculations

The conformational preferences of a series of hydroxylated isoflavones were studied by optical vibrational spectroscopy (FTIR and Raman) coupled with density functional theory (DFT) calculations. Special attention was paid to the effect of the hydroxyl substitution, due to the importance of this group in the biological activity of these systems. The isoflavones investigated – daidzein, genistein and formononetin – were shown to exist in distinct conformations in the solid state, namely regarding the orientation of the hydroxylic groups at C⁷ and within the catechol moiety, that are determinant factors for their conformational behaviour and antioxidant ability. In the light of the most stable conformers obtained for each molecule, a complete assignment of their experimental vibrational spectra was performed.     

HF, MP2 and DFT calculations and spectroscopic study of the vibrational and conformational properties of N-diethylendiamine

The conformational stability and vibrational modes of the N-diethylendiamine organic cation (N-DD(2+)) were studied by experimental (Raman) spectroscopy combined with theoretical calculations. Various ab initio theories were used: Hartree-Fock (HF) theory, M?ller-Plesset second-order perturbation (MP2) theory and density functional theory (DFT). Three stable conformers of N-DD(2+), trans-trans, gauche-gauche and gauche-trans were calculated. A comparison between the computed structural parameters of the conformers at both levels of theory and the X-ray data was made. It is demonstrated that the N-DD(2+) cation adopts more probably the gauche-gauche conformation at room temperature. In order to make a more detailed interpretation of the low temperature phase transition of N-DDHP, the Raman spectra of N-DDHP were recorded at room and low temperature in the 200-3400 cm(-1) region. The vibrational frequencies of the different conformers of N-DD(2+) were also calculated using the DFT/B3LYP (6-31G(d)) level of theory. By comparison between the experimental and theoretical results, the conformational dynamic of the N-DD(2+) organic cation was confirmed. It is shown that the N-DD(2+) cation configuration changes from gauche-gauche conformer to gauche-trans conformer when decreasing the temperature.     

Theoretical study of the conformational and optical properties of a fluorescent dye. A step toward modeling sensors grafted on polymer structures

The conformational and photophysical properties in toluene solution of a naphthoic acid derivative, namely 4-naphthoyloxy-1-methoxy-2,2,6,6-tetramethylpiperidine, which can simulate a pendant active group grafted on apolar polymer structures, were studied by means of calculations based on the density functional theory (DFT) and its time-dependent extension (TD-DFT) coupled to a polarizable continuum model (PCM) of the surrounding medium. The conformational landscape was exhaustively explored and the conformers responsible for the absorption and emission spectra were identified through well established computational procedures based on a tuned combination of functional (PBE0) and basis set (N07D) which reproduced satisfactorily the experimental absorption and emission wavelengths.     

Yukawa流体的相平衡和界面张力研究

应用二阶微扰理论, Duh-Mier-Y-Teran状态方程和在平均球近似(mean spherical approximation, MSA)的基础上获得的直接相关函数, 建立了适用于均匀流体和非均匀流体的状态方程. 结合此状态方程, 重整化群理论(renormalization group theory, RG)和密度泛函理论(density functional theory, DFT), 分别研究了Yukawa流体的相平衡和界面张力. 结果与分子模拟数据吻合良好.     

Conformational and electronic properties of N-methacryloyl-(L)-glutamic acid

Conformers of N-methacryloyl-(L)-glutamic acid (MAGA, C₉H₁₃NO₅) in the gas phase, benzene or methanol environment were searched by the density functional theory (DFT) and time-dependent DFT. Selected conformational isomers based on potential energy surface analysis were studied by considering the structural and electronic properties. B3LYP functional, and HF and MP2 levels were used with the 6-31+G(d,p), 6-311+G(3df,p) and aug-cc-pVDZ basis sets. We explored the effect of medium on the conformational preferences, UV spectra and frontier molecular orbitals of the conformers. The outcomes of this research will be useful for future studies including moieties analogous to MAGA.     

DFT Studies on Detonation Properties,Pyrolysis Mechanism,and Stability of the Nitro and Hydroxyl Derivatives of Benzene

Ninety‐one nitro and hydroxyl derivatives of benzene were studied at the B3LYP/6‐31G?? level of density functional theory. Detonation properties were calculated using the Kamlet‐Jacobs equation. Three candidates (pentanitrophenol, pentanitrobenzene, and hexanitrobenzene) were recommended as potential high energy density compounds for their perfect detonation performances and reasonable stability. The pyrolysis mechanism was studied by analyzing the bond dissociation energy (BDE) and the activation energy (E_a) of hydrogen transfer (H–T) reaction for those with adjacent nitro and hydroxyl groups. The results show that E_a is much lower than BDEs of all bonds, so when there are adjacent nitro and hydroxyl groups in a molecule, the stability of the compound will decrease and the pyrolysis will be initiated by the H–T process. Otherwise, the pyrolysis will start from the breaking of the weakest C–NO₂ bond, and only under such condition, the Mulliken population or BDE of the C–NO₂ bond can be used to assess the relative stability of the compound.     

Experimental and theoretical study of a new carbazole derivative having terminal benzimidazole rings

A novel intramolecular donor–acceptor compound has been synthesized and characterized. This compound was a symmetrical A–π–D–π–A type molecule containing two benzimidazole rings as two electron acceptors (A) and an N-ethylcarbazole group as electron donors (D). The absorption and emission spectra of the compound were determined by experimental methods in solution and were computed by using the density functional theory (DFT) and the time-dependent density functional theory (TDDFT) in gas phase and in chloroform solution. The calculated absorption and emission wavelengths were in good agreement with the experimental ones. The fluorescence quantum yields and fluorescence lifetimes of the compound in several solvents have been studied by means of steady state and time resolved fluorescence. The results showed the compound had high quantum yield. The cross-section of two-photon absorption (TPA) of the compound was measured by using femtosecond laser in dichloromethane solution. The result indicated the cross-section maximum of two-photon absorption was 430 GM at 600 nm. These results made the compound of great interest as a new fluorescent probe and photoluminescence material.     

A DFT study of the vibrational spectra of 1-, and 2-nitrotriphenylene

The infrared (IR) and Raman spectra, and intensities of triphenylene, 1-, and 2-nitrotriphenylene were investigated by the density functional theory (DFT, B3LYP method) with 6-311+G** basis set. Normal mode assignments are proposed with particular emphasis on the nitro group vibrations. Compared to 2-nitrotriphenylene (2-NTRP) 1-nitrotriphenylene (1-NTRP) is predicted to show asymmetric nitro stretches at higher frequencies. Through the vibrational study, the structure–spectroscopic relationships of these nitro polycyclic aromatic hydrocarbons (nitro-PAHs) are made, and possible insights into their differential mutagenic potencies correlated. The geometrical distortions of the TRP structure upon nitro group substitution and correlations between structural parameters and vibrational data as well as structure–function relationships related to the mutagenicity of this important class of polycyclic aromatic hydrocarbons are discussed.     

Cholesterol-based dimeric liquid crystals: synthesis,mesomorphic behaviour of frustrated phases and DFT study

Chiral unsymmetrical dimeric liquid crystals consisting of a cholesterol moiety as chiral entity and a substituted salicylidene imine core (with the substituent being butyl or fluoro or chloro group) interconnected through an even methylene spacer have been synthesised and their mesomorphic properties are characterised. All the dimers exhibit enantiotropic mesophases. The butyl homologue exhibited N* phase only, the fluoro- and chloro-substituted compound exhibited frustrated blue phases (BPs), N* phase and SmC* or twisted grain boundary (TGB) phases. The occurrence of a fluid frustrated phase, the BP, in particular, observed in compounds with a polar moiety and bent optimised conformation by density functional theory (DFT) study, indicates the importance of polar structures and bent shape of the compounds. Theoretical calculation was performed in order to study the optimised conformation, polarity and electron density distribution of the synthesised cholesterol derivatives using DFT. Time-dependent density functional theory (TD-DFT) calculation also had been carried out to investigate the absorption spectra and HOMO–LUMO energies. The experimental and theoretical absorption spectra are also presented.     

FTIR and FT-Raman spectra, vibrational assignments and density functional theory calculations of 2,6-dibromo-4-nitroaniline and 2-(methylthio)aniline

The FTIR and FT-Raman spectra of 2,6-dibromo-4-nitroaniline (2,6-DB4NA) in solid phase and 2-(methylthio)aniline (2-MTA) in liquid phase were measured. The geometry and normal vibrations have been obtained from the density functional theory (DFT) with the B3LYP method employing the 6-31G* basis set. Scale factors, which bring computational frequencies in closer agreement with the experimental data, have been calculated for predominant vibrational motions of the normal modes. The effects of the amino, bromine, nitro, thio and methyl substituents on vibrational frequencies have been investigated. The infrared and Raman spectra were also predicted from the calculated intensities. The observed and the calculated spectra were found to be in good agreement.     

Determination of structural and vibrational spectroscopic properties of 2-, 3-, 4-nitrobenzenesulfonamide using FT-IR and FT-Raman experimental techniques and DFT quantum chemical calculations

In this work, the molecular conformation and vibrational analysis of 2-, 3-, 4-nitrobenzenesulfonamide (abbreviated as 2-, 3-, 4-NBSA) were presented for the ground state using experimental techniques (FT-IR and FT-Raman) and density functional theory (DFT) employing B3LYP exchange correlation with the 6-311++G(d,p) basis set. The complete assignments of fundamental vibrations were performed on the basis of the experimental results and total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The effects of the nitro group substituent on the characteristic benzene sulfonamides bands in the spectra were discussed. Raman activities calculated by DFT method have been converted to the corresponding Raman intensities using Raman scattering theory. Optimized structure of compounds were interpreted and compared with the earlier reported experimental values for studied molecules. The observed and the calculated geometric parameters and vibrational wavenumbers were compared and found to be in good agreement.     

蒽醌及其羟基衍生物的密度泛函理论研究

运用密度泛函理论, 在B3LYP/6-31G*水平上, 对蒽醌及其羟基取代衍生物进行理论计算. 几何全优化的结果表明, 标题化合物均取平面构型, 分子内氢键对几何构型和电子结构影响很大. 基于简谐振动分析求得IR谱频率和强度, 并作了对称性分类和指认, 计算值与实验值良好相符. 运用含时密度泛函理论方法在相同水平上计算了标题物的电子吸收光谱, 发现蒽醌芳环取代衍生物的最低激发单重态均源自HOMO-LUMO(π→π*)跃迁. 基于振动分析, 由统计热力学求得了标题物的热力学性质.     

难熔固体MX(M=Sc,Ti,V;X=C,N,O)电子结构和力学性质的密度泛函研究

采用密度泛函方法对MX(M=Sc,Ti,V;X=C,N,O)固体的体相电子结构和力学性质进行了系统研究.计算结果表明,对于金属原子相同的同一系列化合物,氮化物具有最大的体模量;进一步的研究可知,随着外界压力的增大,化合物由NaCl构型向CsCl构型转变由易到难的顺序依次是氧化物、氮化物和碳化物.本文还首次用密度泛函方法系统地计算了各化合物的能带结构和态密度,并对该类型化合物的导电性能进行了探讨.     

Vibrational spectra and potential energy distributions for 4,5-dichloro-3-hydroxypyridazine by density functional theory and normal coordinate calculations

The solid phase FT-IR and FT-Raman spectra of 4,5-dichloro-3-hydroxypyridazine have been recorded in the regions 4000-400 cm(-1) and 3500-100 cm(-1), respectively. The spectra were interpreted with the aid of normal coordinate analysis following a full structure optimization and force field calculations based on the density functional theory (DFT) using the standard B3LYP/6-31G* and B3LYP/6-311+G** method and basis set combinations. The DFT force field transformed to natural internal coordinates was corrected by a well-established set of scale factors that were found to be transferable to the title compound. The IR and Raman spectra were predicted theoretically and compared with the experimental spectra.     

Vibrational study of tolazoline hydrochloride by using FTIR-Raman and DFT calculations

Quantum mechanical (QM) calculations have been carried out in order to study the tolazoline hydrochloride theoretical structure and vibrational properties. This compound was characterized by infrared and Raman spectroscopies in the solid phase. For a complete assignment of the IR and Raman spectra, the density functional theory (DFT) calculations were combined with Pulay's Scaled Quantum Mechanics Force Field (SQMFF) methodology in order to fit the theoretical frequency values to the experimental ones. An agreement between theoretical and available experimental results was found. Three intense bands in the infrared spectrum characteristic of the protonated species of the compound were detected. Also, the possible charge-transfer and the topological properties for both benzyl and imidazoline rings were studied by means of Natural Bond Orbital (NBO) and Atoms in Molecules theory (AIM) investigation.     

Ab initio base-pairing energies of uracil and 5-hydroxyuracil with standard DNA bases at the BSSE-free DFT and MP2 theory levels

Oxidized cytosine product 5-hydroxyuracil has been shown to be the major chemical precursor for the GC to AT transition, the most frequent substitution mutation observed in aerobic organisms. We have calculated the interaction energy of base-pair formation involving uracil or 5-hydroxyuracil, which is formed in cells by oxidative deamination of cytosine, bound to any of the natural DNA bases, A, C, G, and T, and discuss the effects of the hydroxyl group in this respect. The base-pair geometries and energies were calculated using the 6-311G(dp) basis set under four conditions: using density functional theory (DFT) without out basis set super-position error (BSSE) correction, using DFT with BSSE correction of geometries and energies, using M?ller-Plesset second order perturbation theory (MP2) without BSSE correction, and using MP2 with BSSE geometry and energy correction. We find that the hydroxyl group of 5-HO-U (relative to U) has little effect on the base-pairs with A, C or one conformation of T, while making a substantial energy difference in base-pairs involving G or a different conformation of T. For most of the complexes studied, the BSSE-corrected energies at the DFT and MP2 levels of theory agreed to within 0.5 kcal.     

Identifying aspirin polymorphs from combined DFT-based crystal structure prediction and solid-state NMR

A combined experimental and computational approach was used to distinguish between different polymorphs of the pharmaceutical drug aspirin. This method involves the use of ab initio random structure searching (AIRSS), a density functional theory (DFT)-based crystal structure prediction method for the high-accuracy prediction of polymorphic structures, with DFT calculations of nuclear magnetic resonance (NMR) parameters and solid-state NMR experiments at natural abundance. AIRSS was used to predict the crystal structures of form-I and form-II of aspirin. The root-mean-square deviation between experimental and calculated ¹H chemical shifts was used to identify form-I as the polymorph present in the experimental sample, the selection being successful despite the large similarities between the molecular environments in the crystals of the two polymorphs.     

The mixed anion mineral parnauite Cu9[(OH)10|SO4|(AsO4)2]·7H2O--a Raman spectroscopic study

We have studied and characterized the structural and vibrational properties of 2R-(-)-6-hydroxytremetone, isolated from Xenophyllum poposum (Phil.) by infrared and Raman spectroscopy in the solid phase. The density functional theory (DFT) method together with Pople's basis set show that two stable molecules for the compound have been theoretically determined in the gas phase and that both conformations are present in the solid phase, as was experimentally observed. The harmonic vibrational wavenumbers for the optimized geometry were calculated at B3LYP/6-31G*and B3LYP/6-311++G** levels. For a complete assignment of the vibrational spectra, DFT calculations were combined with Pulay's Scaled Quantum Mechanics Force Field (SQMFF) methodology in order to fit the theoretical wavenumber values to the experimental ones. Then, a complete assignment of all the observed bands in the infrared spectrum for the compound was performed. The natural bond orbital (NBO) study reveals the characteristics of the electronic delocalization of the two structures, while the corresponding topological properties of electronic charge density are analyzed by employing Bader's Atoms in the Molecules theory (AIM).