Conformational peculiarities of a new heterocyclic dihydrothienothiopyranoisoxazole system

The crystalline and molecular structures of 3H-3a,4-dihydro-7-methylthieno[3,2:5,6]thiopyrano[4,3-c]isoxazole and 3H-3a,4-dihydro-3-isopropoxycarbonyl-3a,7-dimethylthieno[3,2:5,6]thiopyrano[4,3-c]isoxazole are determined by X-ray analysis. The effect of steric factors on intramolecular 1,3-dipolar cycloaddition is shown.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 302–304, February, 1995.This work was financially supported by the Russian Foundation for Basic Research (Project No. 93-03-18461).     

Synthesis of 2′,3′-dideoxynucleosides from 5-alkoxymethyluracils

Summary A modified synthesis of protected 2,3-dideoxyribose5 starting fromL-glutamic acid (1) is described. Reaction of5 with silylated 5-hydroxymethyluracil7 a and 5-alkoxymethyluracils7 b–e in the presence of trimethylsilyl triflate afforded an anomeric mixture of 2,3-dideoxyuridine derivatives8 a–e and9 a–e. Deprotection with methanolic ammonia and separation by chromatography gave the corresponding nucleosides10 a–e and11 a–e. Treatment of9 b–e with tri(1H-1,2,4-triazol-1-yl)phosphine oxide and subsequent reaction of12 b–e with ammonia in dioxane afforded the cytosine derivatives13 b–e which on treatment with methanolic ammonia gave the corresponding 2,3-dideoxycytidine derivatives14 b–e and15 b–e. In contrast with the parent compounds, these alkoxymethyl derivatives had no appreciable activity against human immunodeficiency virus (HIV-1).

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Synthese von 2,3-Dideoxynucleosiden aus 5-Alkoxymethyluracilen

Zusammenfassung Ausgehend vonL-Glutaminsäure (1) wird eine modifizierte Synthese von geschützter 2,3-Dideoxyribose (5) beschrieben. Reaktion von5 mit silyliertem 5-Alkoxymethyluracilen7 b–e in Gegenwart von Trimethylsilyltriflat ergab anomere Mischungen der 2,3-Dideoxyuridinderivate8 a–e und9 a–e. Abspaltung der Schutzgruppe mit methanolischen Ammoniak und chromatographische Trennung ergab die entsprechenden Nucleoside10 a–e und11 a–e. Behandlung von9 b–e mit Tri(1H-1,2,4-triazol-1-yl)phosphinoxid und nachfolgende Reaktion von12 b–e mit Ammoniak in Dioxan ergab die Cytosinderivate13 b–e, welche nach Behandlung mit methanolischem Ammoniak die entsprechenden 2,3-Dideoxycytidinderivate14 b–e und15 b–e ergaben. Im Gegensatz zur Stammverbindung hatten diese Alkoxymethylderivate keine nennenswerte Wirksamkeit gegen den menschlichen Immunschwächevirus (HIV-1).

     

New route for the synthesis of 2-thiouracil analogues of 3′-azido-2′,3′-dideoxy nucleosides

Summary Reaction of 3-azido-5-O-tert-butyldiphenylsilyl-2,3-dideoxy-D-erythro-pentofuranoside (5) with silylated 2-thiouracil and 5-alkoxy-2-thiouracils in the presence of trimethylsilyl trifluoromethanesulfonate afforded an anomeric mixture of the corresponding 3-azido-2,3-dideoxy-2-thiouridine derivatives with the -anomer as the main product. Deprotected nucleosides were obtained by treatment with tetrabutylammonium fluoride.

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Ein neuer Weg zur Synthese von 2-Thiouracil-Analogen von 3-Azido-2,3-dideoxy-Nucleosiden

Zusammenfassung Die Reaktion von 3-Azido-5-O-tert-butyldiphenylsilyl-2,3-dideoxy-D-erythro-pentofuranosid (5) mit silyliertem 2-Thiouracil und 5-Alkoxy-2-thiouracil in Gegenwart von Trimethylsilyltrifluormethansulfonat ergab eine anomere Mischung der entsprechenden 3-Azido-2,3-dideoxy-2-thiouridin-Derivate, wobei das -Anomer das Hauptprodukt darstellte. Die ungeschützten Nucleoside wurden mittels Behandlung mit Tetrabutylammoniumfluorid erhalten.

     

Polyimides from complexes of benzophenonetetracarboxylic acid diesters with diamines. 5. Mechanism of thermal cyclization of H-complexes

The results of a study, by thermal mass spectrometric analysis and NMR spectroscopy, of the polycondensation of H-complexes are presented from which it is possible to propose a mechanism for the reaction. It is shown that conversion of the H-complexes into polyimides takes place through the formation of intermediate zwitterions with an amino acid bond after initial separation of methanol, following which elimination of water commences in one stage to form an imide ring. The role of theortho position of the functional groups in the acid ester during the formation of the hydrogen bond is discussed.Institute of Macromolecular Compounds, Russian Academy of Sciences, 199004 St. Petersburg. Translated fromIzvestiya Akademii Nauk, Seriya Khimicheskaya, No. 11, pp. 2517–2524, November, 1992.     

Convergent synthesis of 2′,3′-dideoxy-3′-mercapto nucleosides — Potential anti-HIV agents

Summary Methyl 3-benzoylthio-5-O-tert-butyldiphenylsilyl-2,3-dideoxy--D-erythro-pentofuranoside (4) and its corresponding anomer5 were synthesized in four steps from 2-deoxy-D-ribose and used as substrates for the synthesis of nucleosides by condensation with silylated thymidine and N⁶-isobutyryladenine. The nucleosides were deprotected by treatment with Bu₄NF inTHF followed by reaction with MeONa in MeOH to give 3-deoxy-3-mercaptothymidine (8), 2,3-dideoxy-3-mercaptoadenosine (15) and its corresponding anomer16. In the latter reactions it was important to use degassed solvents to minimize formation of the corresponding disulfides of purine nucleosides. Using Bu₄NF, without subsequent reaction with MeONa in the deprotection reaction, resulted in intermolecular transesterification reactions.On leave from Chemistry Department, Faculties of Science and Education, Tanta University, Tanta, Egypt     

Camdas: An automated conformational analysis system using molecular dynamics

We present an automated conformational analysis program, CAMDAS (Conformational Analyzer with Molecular Dynamics And Sampling). CAMDAS performs molecular dynamics (MD) calculations for a target molecule and samples conformers from the trajectory of the MD. The program then evaluates the similarities between each of the sampled conformers in terms of the root- mean-square deviations of the atomic positions, clusters similar conformers, and finally prints out the clustered conformers. This MD-based conformational analysis is a broadly used method, and CAMDAS is intended to provide a convenient framework for the method. CAMDAS has the ability to find the representative conformers automatically from an arbitrarily given structure of the molecule. The accuracy of the program was examined using N- acetylalanine-N-methylamide, and the obtained result was consistent with that of the systematic search method. In the test calculation of cyclodecane, CAMDAS could identify most of the known conformers and their conformational enantiomers by examining only 5000 conformers. In addition, the potential-scaled method, which we have developed previously as an accelerating technique for MD, could find two additional conformers of cyclodecane that have not been reported. CAMDAS presents a convenient way to find the energetically possible conformers of a molecule, which is needed especially in the early stage of drug design.     

Natural product chemistry. Part 121. Synthesis of dicoumarinyl ethers with the structures proposed for fatagarine and oreojasmine

Synthesis of the 7,8-dicoumarinyl ethers: 7-methoxy-7,8-oxydicoumarin and 6,7-dimethoxy-7,8-oxydicoumarin, established that the structures of fatagarine and oreojasmine for which these two structures have been proposed, have to be revised. Synthesis of 7-methoxy-5,7-oxydicoumarin and 8-methoxy-7,7-oxydicoumarin exclude the possibility of these dicoumarinyl ether structures for fatagarine.

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Naturstoffchemie. 121. Mitt.: Synthese von Dicumarinylethern mit den für das Fatagarin und das Oreojasmin vorgeschlagenen Strukturen

Zusammenfassung Durch die Synthese der 7,8-Dicumarinylether: 7-Methoxy-7,8-oxydicumarin und 6,7-Dimethoxy-7,8-oxydicumarin, ließ sich nachweisen, daß die für das Fatagarin und Oreojasmin vorgeschlagenen Strukturen revidiert werden müssen. Die Darstellung des 8-Methoxy-7,7-oxydicoumarin und 7-Methoxy-5,7-oxydicumarin schließen die Möglichkeit dieser Strukturen für das Fatagarin aus.

     

New heterocyclic system based on vinylsulfonylfluorobenzene and X-ray structural study of this compound

Oxidation of 1,2,4,5-tetrafluoro-3,6-bus (vinylthio)benzene (1) affords 1,2,4,5-tetra fluoro3,6-bis(vinylsulfonyl)benzene (2) in 65 % yield. The reaction of compound 2 with allylamine gives a new heterocyclic compound, 5,6-difluorobenzo-[a,d]-bis(3,3-dihydro-l,l-sulfonylallyl-4,4-perhydroazine) (3). This compound is the product of nucleophilic addition at the vinylsulfonyl group and intramolecular replacement of fluorine atoms of the benzene ring. The structure of compound 3 has been established by X-ray structural study.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 430–433, February, 1996.     

N,N-dialkoxy-N′-alkylureas

The chlorination of N-alkoxy-N-alkylureas (1) by the action oft-BuOCl proceeds regiospecifically to give stable N-chloro-N-alkoxy-N-alkylureas (2). The alcoholysis of2 leads to N,N-dialkoxy-N-alkylureas (3). The alkaline hydrolysis of3 is a new, convenient method for the preparation of dialkoxyamines.N. N. Semenov Institute of Chemical Physics, Russian Academy of Sciences, 117913 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 10, pp. 2441–2443, October, 1992.     

The study of the structure of solutions of the H-complexes of diesters of tetracarboxylic acids with diamines by light scattering

The parameters of the hypermolecular orientation order in H-complexes of the dimethyl ester of 3,3,4,4-benzophenonetetracarboxylic acid with 1,6-hexamethylenediamine (BPE · HMDA) and 4,4-diaminodiphenylmethane (BPE · DADPM) in methanol and aqueous methanol have been investigated using the angular dependences of the isotropic and anisotropic components of scattered light. The radii of the inertias of the fluctuation domains and the factors of the orientation order of their scattering elements were determined. A model for the structure of the solutions of the complexes considered is presented. The experimental values of optical anisotropy have been compared with those calculated by the valence-optical scheme. The inversion of the calculated and experimental values of optical anisotropy is explained by the nature of the bonds fixing the ester and diamines in both complexes.For part 2, seeRuss. Chem. Bull, 1994,43, 1153.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1596–1599, September, 1994.     

Investigation of the process of polyimide formation from complexes of the diester of benzophenonetetracarboxylic acid with diamines

The kinetics of thermal imidization of the H-complexes derived from the diethyl ester of 3,3,4,4-benzophenonetetracarboxylic acid (EBZP) and various diamines have been studied. A comparison of kinetic parameters obtained for the imidization of H-complexes based on ethyl or methyl esters of this acid has disclosed the differences in the behavior of each of the two H-bonds and the contribution of each bond to the mechanism of polyimide formation from the respective H-complexes.For part 5, see ref.¹ Translated fromIzyestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 300–303, February, 1993.     

2,2′-Diphenyl-Δ3,3′-bi-3H-indole-1,1′-dioxide: Molecular interactions and crystal structure

The Dinitrone 2,2-diphenyl-^3,3-bi-3H-indole-1,1-dioxide acts as a demethylating and dehydrogenating agent. The mechanism of interaction of the dinitrone with donors and acceptors does not involve intermediate charge-transfer complexes probably due to a self association between dinitrone molecules (as supported by X-ray determinations). The crystal structure of the dinitrone was obtained by direct methods;a=9.967 (2),b=19.817 (3),c=10.875 (2) Å, =111.2 (2)°, space group P2₁/n. The finalR andR _w were 0.089 and 0.063 for all measured reflexes.

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2,2-Diphenyl-^3,3-bi-3H-indol-1,1-dioxid: Molekulare Wechselwirkungen und Kristallstruktur

Zusammenfassung Das Dinitron 2,2-Diphenyl-^3,3-bi-3H-indol-1,1-dioxid wirkt als Demethylierungs- und Oxydationsmittel. Die Wechselwirkung des Dinitrons mit Elektronen-Acceptoren und Elektronen-Donatoren geht wegen der Selbstassoziation zwischen den Dinitron-Molekülen ohne die dazwischenliegende Bildung eines Charge-Transfer-Komplexes vor sich; das wird auch von Röntgenstrukturuntersuchungen gestützt. Die Kristallstruktur wurde mit direkten Methoden ermittelt:a=9.967 (2),b=19.817 (3),c=10.875 (2) Å; =111.2 (2)°. P2₁/n. Die endgültigen WerteR undR _w waren 0.089 und 0.063 für alle gemessenen Reflexe.

     

Antioxidant Study and Assignments of NMR Spectral Data for 3′,4′,7-Trihydroxyflavanone 3′,7-Di-O-β-D-glucopyranoside (Butrin) and Its Hydrolyzed Product

The NMR spectral data including high resolution ¹H, ¹³C and 2D NMR for butrin, 3,4,7-trihydroxyflavanone 3,7-di-O--D-glucopyranoside, isolated from flowers of Butea monosperma, are reported here for the first time. Butrin was hydrolyzed using b-glucosidase to butin in high yield. They were subjected to free radical scavenging test using 2,2-diphenyl-1-picrylhydrazyl (DPPH) spectrophotometric assay. At a dose of 4 × 10^-8 mol of tested compounds, the percentage of reduced DPPH for butin was 14.5% while no reduction was observed for butrin (0%).     

Zur Chemie des „Dinaphthyldichinhydron”

Dinaphthyldiquinhydrone (4) first obtained byStenhouse andGroves ² reacts as well as 4,4-bi-(1,2-naphthoquinone)¹ with aniline and substituted anilines to give anilinoquinones2 a-h. However, yields of2 are considerable higher if4 is used. The IR-Spectrum of4 is very similar to that of 2,11-dihydroxy-3,10-perylenquinone, therefore we suggest for4 a the structure of a 3,3-dihydroxy-4,4-dioxo-1,1, 4,4-tetrahydro-1,1-binaphthylidene, at least in the solid state.

Herrn Prof. Dr.G. Zigeuner in traditionsverbundener Freundschaft zum 60. Geburtstag gewidmet.     

Reaction of 2-methyl-4,5-dihydrofuran with hydrogen chloride

Reaction of 2-methyl-4,5-dihydrofuran with HCl at 0°C yields 5-chloro-2-pentanone (13%) and 1-(2-methyltetrahydrofuryl-2)-5-chloro-2-pentanone (27%) and at 200° 5-chloro-2-pentanone exclusively.N. D. Zelinskii Institute of Organic Chemistry, Russian Academy of Sciences, 117913 Moscow. I. M. Gubkin State Petroleum and Gas Academy, 117917 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 9, pp. 2188–2191, September, 1992.     

2,2′-Diphenyl-Δ3,3′-bi-3H-indole-1,1′-dioxide: Competitive demethylation and redox reactions

Competitive demethylation and redox reactions induced by 2,2-diphenyl-^3,3-bi-3H-indole-1,1-dioxide,1 (dinitrone) on several nitrogen bearing compounds (pyridines, amides, indoles, hydrazones and amines) are reported.Es wird über kompetitive Demethylierungen und Redoxreaktionen an stickstoffhaltigen Verbindungen (Pyridine, Amide, Indole, Hydrazone und Amine) berichtet, die durch das Dinitron 2,2-Diphenyl-3,3-bi-3H-indol-1,1-dioxid induziert werden.

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2,2-Diphenyl-3,3t-bi-3H-indol-1,1t-dioxid: Kompetitive Demethylierung und Redoxreaktionen

     

Synthesis of 1-(3-(1,2,4-triazol-1-yl)-2,3,6-trideoxy-L-arabino-hexofuranosyl)uracils via an α,β-unsaturated aldehydrohexose

Summary Mercuric catalyzed hydrolysis of acetylatedL-rhamnal1 gave the ,-unsaturated aldehyde2. 1,2,4-Triazole was coupled, in a Michael type addition reaction, to2 at C-3 in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) to give, after acetylation at the anomeric center, an anomeric mixture of 1,5-di-O-acetyl-3-(1,2,4-triazol-1-yl)-2,3,6-trideoxy-L-arabino-hexofuranose (3). Reaction of3 with silylated 2,4-dihydroxypyrimidines4 in the presence of trimethylsilyl triflate as catalyst followed by deprotection with 33% methylamine in absolute ethanol afforded the corresponding nucleosides7 and8.

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Synthese von 1-(3-(1,2,4-Triazol-1-yl)-2,3,6-trideoxy-L-arabino-hexofuranosyl)uracilen über eine ,-ungesättigte Aldohexose

Zusammenfassung Die quecksilberkatalysierte Hydrolyse von acetyliertemL-Rhamnal1 ergab die ,-ungesättigten Aldehyde2. 1,2,3-Triazol wurde in Gegenwart von 1,8-Diazabicyclo[5.4.0]-7-undecen mittels einer Addition vom Michael-Typ an C-3 von2 gekoppelt und ergab dann nach Acetylierung am anomeren Zentrum eine anomere Mischung von 1,5-Di-O-acetyl-3-(1,2,4-triazol-1-yl)-2,3,6-trideoxy-L-arabino-hexofuranose (3). Die Reaktion von3 mit silyliertem 2,4-Di-hydroxypyrimidinen4 in Gegenwart von Trimethylsilyltriflat in absolutem Ethanol ergab die entsprechenden Nucleoside7 und8.

     

Direct spectrometric determination of proteins in body fluids using a near-infrared cyanine dye

A new near-infrared (NIR) dye, 1,1-disulfobutyl-3,3,3,3-tetramethylindotricarbocyanine (DTCY) has been developed for the quantitation of proteins in solution. The method is based on the binding of DTCY to proteins under acidic conditions. The binding of DTCY to proteins causes a new band at 814 nm. The maximum binding number of bovine serum albumin (BSA) with DTCY was measured as 100. The linear range is 0.3–40 g mL^–1 for BSA and human serum albumin (HSA), respectively. Except for Fe²⁺, Cu²⁺, and cetyltrimethylammonium bromide, all of the examined coexisting substances show no interference in the assay. The method has been applied to the quantitation of proteins in serum and urine with recoveries between 96 and 105%.     

Photochemical properties of 2,2′-biquinoxalyl and thieno[2,3-b:4,5-b′]biquinoxalyl

2,2-biquinoxyalyl and thieno[2,3-b:4,5-b]biquinoxyalyl can be photoreduced in acidified alcoholic solutions and in aqueous solutions of acids. Quantum yields of the photochemical reaction have been determined. The fluorescence and phosphorescence spectra of these compounds have been recorded and the fluorescence quantum yields have been determined. A mechanism of the photoreduction has been proposed.

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Photochemische Eigenschaften von 2,2-Bichinoxalyl und Thieno[2,3-b:4,5-b]bichinoxalyl

Zusammenfassung 2,2-Bichinoxalyl und Thieno[2,3-b:4,5-b]bichinoxalyl unterliegen photochemischer Reaktion in angesäuerten Alkohollösungen und in wäßrigen Säurelösungen. Es wurde die photochemische Quantenausbeute bestimmt. Außerdem wurden die Fluoreszenz- und Phosphoreszenz-Spektren aufgezeichnet und die Fluoreszenz-Quantenausbeuten bestimmt. Zugleich wurde ein Mechanismus zur Photoreduktion vorgeschlagen.