A computer program for the automatic estimation of H NMR chemical shifts

A computer program has been developed for predicting ¹H NMR chemical shifts. It automatically finds the various substructures of a given molecule for which additivity rules are available. Several strategies have been used to widen the range of applicability. with 200 test compounds, over 90% of the assigned chemical shifts of protons bonded to a carbon atom could be predicted. The mean deviation between observed and predicted values was 0.08 ppm with a standard deviation of 0.19ppm.     

Computer-aided spectral assignment in nuclear magnetic resonance spectroscopy

The proton-carbon correlation spectra, HMBC (heteronuclear multiple bond correlation) and HMQC (heteronuclear multiple quantum correlation), respectively, provide direct and remote connectivity information with high sensitivity. Their combination enables carbon-carbon proximity relationships to be deduced, which are formally identical to those produced by a fictitious INADEQUATE-2D experiment, where correlations would be established exclusively between atoms linked by one or two bonds. The CASA program uses these relationships, as well as DEPT spectra and elementary chemical-shift considerations to assign the ¹³C spectrum of a compound if its structure is known or assumed. If the structure conflicts with the experimental data, no assignment is produced. The CASA program serves as an aid to either spectral assignment or structural elucidation.     

Xe nuclear magnetic resonance line shapes in channels decorated with paramagnetic centers

To make predictions of the Xe NMR line shapes for Xe in channels decorated with paramagnetic centers, we consider a model system using the O(2) molecule as the paramagnetic center. The previously calculated quantum mechanical Xe@O(2) hyperfine tensor for various configurations of Xe in the presence of O(2) provides a model for the hyperfine response of Xe atom to the presence of a paramagnetic center. The averaging is carried out using the same grand canonical Monte Carlo methodology as for calculating NMR line shapes for Xe in diamagnetic channels, modified to include the effects of the hyperfine tensor response. We explore the temperature dependence of the Xe line shapes, the dependence on the concentration, and the symmetry of distribution of embedded paramagnetic centers, on the orientation of the paramagnetic center axis with respect to the channel axis, and on the radial distance of the paramagnetic center from the axis of the channel. We predict Xe line shape signatures of the presence and orientation of paramagnetic centers and deduce which tensor elements provide measures of concentration and radial distance of paramagnetic centers from the channel axis.     

The nuclear magnetic resonance line shapes of Xe in the cages of clathrate hydrates

We report, for the first time, a prediction of the line shapes that would be observed in the (129)Xe nuclear magnetic resonance (NMR) spectrum of xenon in the cages of clathrate hydrates. We use the dimer tensor model to represent pairwise contributions to the intermolecular magnetic shielding tensor for Xe at a specific location in a clathrate cage. The individual tensor components from quantum mechanical calculations in clathrate hydrate structure I are represented by contributions from parallel and perpendicular tensor components of Xe-O and Xe-H dimers. Subsequently these dimer tensor components are used to reconstruct the full magnetic shielding tensor for Xe at an arbitrary location in a clathrate cage. The reconstructed tensors are employed in canonical Monte Carlo simulations to find the Xe shielding tensor component along a particular magnetic field direction. The shielding tensor component weighted according to the probability of finding a crystal fragment oriented along this direction in a polycrystalline sample leads to a predicted line shape. Using the same set of Xe-O and Xe-H shielding functions and the same Xe-O and Xe-H potential functions we calculate the Xe NMR spectra of Xe atom in 12 distinct cage types in clathrate hydrates structures I, II, H, and bromine hydrate. Agreement with experimental spectra in terms of the number of unique tensor components and their relative magnitudes is excellent. Agreement with absolute magnitudes of chemical shifts relative to free Xe atom is very good. We predict the Xe line shapes in two cages in which Xe has not yet been observed.     

Stimulated echoes and two-dimensional nuclear magnetic resonance spectra for solids with simple line shapes

Nuclear magnetic resonance (NMR) experiments on ion conductors often yield rather unstructured spectra, which are hard to interpret if the relation between the actual translational motion of the mobile species and the changes of the NMR frequencies is not known. In order to facilitate a general analysis of experiments on solids with such spectra, different models for the stochastic evolution of the NMR frequencies are considered. The treated models involve random frequency jumps, diffusive evolutions, or approximately fixed frequency jumps. Two-dimensional nuclear magnetic resonance spectra as well as stimulated-echo functions for the study of slow and ultraslow translational dynamics are calculated for Gaussian equilibrium line shapes. The results are compared with corresponding ones from rotational models and with experimental data.     

Trends in shift rules in carbon-13 nuclear magnetic resonance spectroscopy and computer-aided shift prediction

A major problem in the use of ¹³C-NMR spectroscopy for structure identification is to estimate the ¹³C shifts of compounds known or suspected to be present in the spectrum. The substituent chemical shifts of different functional groups were studied and new, detailed empirical rules are reported. Trends in these shift parameters are noted. It appears that for functional groups containing more than one nucleus, the observed shift parameters (x=α, β, γ, δ shifts) can be approximated by the shift parameters of the component nuclei (x_comp) in the functional group, i.e., x_obs ≈ x_comp. The detailed shift behavior and shift additivity rules were computerized. The resulting program (CSPEC) has many user friendly features, e.g., ease of input, modification of structure, storage and retrieval of known shifts, and rapid computation.     

Diffusion, relaxation, and chemical exchange in casein gels: a nuclear magnetic resonance study

Water in protein/water mixtures can be described in terms of bound water and free water, by exchange between these two states, and by its exchange with appropriate sites on the protein. 1H-NMR diffusion and relaxation measurements provide insights into the mobility of these states. T2 relaxation-time dispersions (i.e., T2 relaxation times at different echo pulse spacings) reveal additional information about exchange. We present a comprehensive set of diffusion and T2 dispersion measurements on casein gels for which the protein/water ratio ranges from 0.25 to 0.5. The combination of these methods, taken in conjunction with concentration dependence, allows a good estimate of the parameters required to fit the data with Luz/Meiboom and Carver/Richards models for relaxation and chemical exchange. We compare the exchange (a) between water and protein and (b) between free water and bound water. Further, we attempt to distinguish chemical site exchange and diffusion/susceptibility exchange.     

Characterization of the chemical structure of thermosetting resins by high-resolution solid-state carbon-13 nuclear magnetic resonance spectrometry

The combination of proton-dipolar decoupling, magic-angle spinning and cross-polarization techniques results in high-resolution ¹³C-nuclear magnetic resonance (n.m.r.) spectra of solid-state compounds. In homogeneous materials, using a relatively low external field and in the absence of motional line broadenings, the chemical structure of totally insoluble curec polymer resins can be estimated quantitatively, and the chemical mechanisms leading to their formation can be elucidated. The capability of high-resolution solid-state ¹³C-n.m.r. for solving such problems is illustrated by the example of the polystyrylpyridine system obtained by reaction of terephthalic aldehyde with pyridine. The decreasing amounts of aldehyde and methyl groups and the appearance of network crosslinkages were studied as a function of both the temperature and the duration of the curing treatment. The results are interpreted quantitatively in terms of two chemical mechanisms: first, the addition of a methyl group from the collidine molecule to the aldehyde function of terephthalic aldehyde followed by elimination of water; secondly, a cross-linking reaction consisting of the addition of a collidine methyl group to the double bonds formed in the first process. The high resolution of the ¹³C-n.m.. spectra also makes it possible to observe the different reactivities of the o- and p-methyl substituents of the collidine molecule. p-Methyl reactions occur only when most of the o-methyl functions have disappeared. Thus, high-resolution solid-state ¹³C-n.m.r. provides a precise characterization of the polystyrylpyridine resins in terms of both their quantitative chemical composition and their reaction mechanisms.     

A study of the structure of chemical compounds by nuclear magnetic resonance spectroscopy

The PMR spectra of the condensation products of N-arylsulfonylmonoimino sulfur dioxide with the dienes were studied. It was established that the reaction goes according to the condensation pattern of the Diels-Alder reaction, involving the nitrogen sulfur double bond with the formation of 1-oxo-2-arylsulfonyl-3, 6-dihydro-1, 2-thiazines.     

A study of the structure of chemical compounds by nuclear magnetic resonance spectroscopy

The PMR spectra of the condensation products of N-arylsulfonylmonoimino sulfur dioxide with the dienes were studied. It was established that the reaction goes according to the condensation pattern of the Diels-Alder reaction, involving the nitrogen sulfur double bond with the formation of 1-oxo-2-arylsulfonyl-3, 6-dihydro-1, 2-thiazines.For part V, see [13].     

Prediction of 31P nuclear magnetic resonance chemical shifts for phosphines

Quantitative relationships of the (31)P NMR chemical shifts of the phosphorus atoms in 291 phosphines with the atomic ionicity index (INI) and stereoscopic effect parameters (epsilon(alpha), epsilon(beta), epsilon(gamma)) were primarily investigated in this paper for modeling some fundamental quantitative structure-spectroscopy relationships (QSSR). The results indicated that the (31)P NMR chemical shifts of phosphines can be described as the quantitative equation by multiple linear regression (MLR): delta(p)(ppm)= -174.0197-2.6724INI+40.4755epsilon(alpha)+15.1141epsilon(beta)-3.1858epsilon(gamma), correlation coefficient R=0.9479, root mean square error (rms)=13.9, and cross-validated predictive correlation coefficient was found by using the leave-one-out procedure to be Q(2)=0.8919. Furthermore, through way of random sampling, the estimative stability and the predictive power of the proposed MLR model were examined by constructing data set randomly into both the internal training set and external test set of 261 and 30 compounds, respectively, and then the chemical shifts were estimated and predicted with the training correlation coefficient R=0.9467 and rms=13.4 and the external predicting correlation coefficient Q(ext)=0.9598 and rms=10.8. A partial least square model was developed that produced R=0.9466, Q=0.9407 and Q(ext)=0.9599, respectively. Those good results provided a new, simple, accurate and efficient methodology for calculating (31)P NMR chemical shifts of phosphines.     

A computer program for the optimal ion chromatographic determination of anions in waters

Summary A general form of computer program which can assist in method development for any natural water has been developed. Necessary input data, sequence of main operations, necessary mathematical relationships and the output data are specified. The development of the structure of the computer program was based on experiences with real samples.     

Construction of a data base for cobalt-59 nuclear magnetic resonance spectrometry

The TOOL-IR. PDB and COOD systems are compared for the construction of data bases for ⁵⁹Co-n.m.r. bibliographic and spectral data. The spectral data used are the chemical shifts from several different standards, and the line widths and coupling constants (if present). The PDB system is effective for storage and retrieval of bibliographic data, but the COOD system is better for the retrieval of spectral data, and for combination of data files on literature and chemical shifts.     

Determination of metformin hydrochloride in tablets by nuclear magnetic resonance spectrometry

The ¹H-n.m.r. signal of the drug (10–35 mg ml^?1) in deuterium oxide, with maleic acid as internal reference standard, is used. The integral of the peak at 3.06 ppm with respect to 3-trimethylsilylpropionic acid is compared with that at 6.3 ppm for the internal standard. The method is quantitative and free from interference by tablet excipients.     

Theoretical predictions of nuclear magnetic resonance parameters in a novel organo-xenon species: chemical shifts and nuclear quadrupole couplings in HXeCCH

We calibrate the methodology for the calculation of nuclear magnetic resonance (NMR) properties in novel organo-xenon compounds. The available state-of-the-art quantum-chemical approaches are combined and applied to the HXeCCH molecule as the model system. The studied properties are (129)Xe, (1)H, and (13)C chemical shifts and shielding anisotropies, as well as (131)Xe and (2)H nuclear quadrupole coupling constants. The aim is to obtain, as accurately as currently possible, converged results with respect to the basis set, electron correlation, and relativistic effects, including the coupling of relativity and correlation. This is done, on one hand, by nonrelativistic correlated ab initio calculations up to the CCSD(T) level and, on the other hand, for chemical shifts and shielding anisotropies by the leading-order relativistic Breit-Pauli perturbation theory (BPPT) with correlated ab initio and density-functional theory (DFT) reference states. BPPT at the uncorrelated Hartree-Fock level as well as the corresponding fully relativistic Dirac-Hartree-Fock method are found to be inapplicable due to a dramatic overestimation of relativistic effects, implying the influence of triplet instability in this multiply bonded system. In contrast, the fully relativistic second-order Moller-Plesset perturbation theory method can be applied for the quadrupole coupling, which is a ground-state electric property. The performance of DFT with various exchange-correlation functionals is found to be inadequate for the nonrelativistic shifts and shielding anisotropies as compared to the CCSD(T) results. The relativistic BPPT corrections to these quantities can, however, be reasonably predicted by DFT, due to the improved triplet excitation spectrum as compared to the Hartree-Fock method, as well as error cancellation within the five main BPPT contributions. We establish three computationally feasible models with characteristic error margins for future calculations of larger organo-xenon compounds to guide forthcoming experimental NMR efforts. The predicted (129)Xe chemical shift in HXeCCH is in a novel range for this nucleus, between weakly bonded or solvated atomic xenon and xenon in the hitherto characterized molecules.     

Methodological aspects in the calculation of parity-violating effects in nuclear magnetic resonance parameters

We examine the quantum chemical calculation of parity-violating (PV) electroweak contributions to the spectral parameters of nuclear magnetic resonance (NMR) from a methodological point of view. Nuclear magnetic shielding and indirect spin-spin coupling constants are considered and evaluated for three chiral molecules, H2O2, H2S2, and H2Se2. The effects of the choice of a one-particle basis set and the treatment of electron correlation, as well as the effects of special relativity, are studied. All of them are found to be relevant. The basis-set dependence is very pronounced, especially at the electron correlated ab initio levels of theory. Coupled-cluster and density-functional theory (DFT) results for PV contributions differ significantly from the Hartree-Fock data. DFT overestimates the PV effects, particularly with nonhybrid exchange-correlation functionals. Beginning from third-row elements, special relativity is of importance for the PV NMR properties, shown here by comparing perturbational one-component and various four-component calculations. In contrast to what is found for nuclear magnetic shielding, the choice of the model for nuclear charge distribution--point charge or extended (Gaussian)--has a significant impact on the PV contribution to the spin-spin coupling constants.     

Theoretical studies of nuclear magnetic resonance parameters for the proton-exchange pathways in porphyrin and porphycene

The nuclear magnetic resonance (NMR) parameters in porphyrin and porphycene have been calculated to investigate their changes during the process of proton exchange, using density-functional theory (DFT) for both the spin-spin coupling constants and the shielding constants. In addition, in calculations on the smaller 1,3-bis(arylimino)isoindoline molecule, we have tested the performance of our computational approach against experimental data. The calculated nuclear spin-spin coupling constants and shielding constants have been analyzed as functions of the progress of the proton transfer between two nitrogen atoms. The one-bond couplings between proton and nitrogen, dominated by the Fermi-contact term, decay steeply as the internuclear distance increases. The small changes in the intramolecular J(HH) coupling between two inner protons are mainly determined by the sum of relatively large spin-orbit terms. The isotropic shielding constant shows a strong deshielding of the nitrogen nuclei as the proton migrates away. Both the isotropic shielding of the exchanged protons and the shielding anisotropy exhibit a minimum close to the transition states.