Quantum-chemical study of manifestations of conjugation in molecules containing conjugated C=C and C=O bonds

Based on the MNDO calculations of the electronic structure of the molecules of acrolein, glyoxal, and butadiene, possible mechanisms of the conjugation in systems containing conjugated C=C and C=O bonds have been analyzed. In the electronic ground state ofs-trans-acrolein, the , -conjugation is very small, whereas in the first excited electronic state, the conjugation is substantial, In the ground state ofs-trans-glyoxal, the ,-conjugation should manifest itself clearly but should be weaker than in butadiene, whereas in the first excited electronic state, this conjugation should be more pronounced, Alternation of double and single bonds in the classic structural formula of a molecule does not ensure that this molecule exhibits the properties of a -conjugated system even in planar conformations.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1648–1652, July, 1996.     

Konformationen diastereoisomererBis-(alkylaryl)-ether

Summary X-ray-analysis of the meso-ether2 showed the existence of two bridged species in the unit cell besides the expected molecule. The additional bonds between the 9- and 10-positions of the anthracene moieties were extraordinarily long. This fact leads to conclusions on the reactive behaviour of alkylaryl carbinoles upon acid-catalysed etherification.

     

Calculation of some electronic excited states of formaldehyde

The optimized MO's of several excited states of formaldehyde have been calculated by means of a large basis set of modified Gaussian functions; particular attention has been paid to the * transition. The total energy of the various states has been obtained as the sum of the SCF and correlation energies; the last one has been calculated as a functional of the electronic density. The calculated values for the transition energies are in good agreement with the experiment. A strong interaction of the * state with the continuum is evidentiated; this fact can justify the absence of the * band in the absorption spectrum.     

Complexation of Paraquat Dication with Disodium 1,8-Disulfonato-3,4,5,6-Acridinetetracarboxylic Acid in Water

Disodium 1,8-disulfonato-3,4,5,6-acridinetetracarboxylic acidforms a complex of 1 : 1 stoichiometry with paraquatdication in water. The stability constant of thecomplex is 1.2 × 10⁴ M^-1 at 25 °C.     

Synthesis ofN-alkylamides of 3-fluoroalkylaziridine-2-carboxylic acids

The N-alkylamides of 3-fluoroalkylaziridine-2-carboxylic acids have been prepared for the first time by the interaction of ethyl 0-fltioroalkyl-,-dibromocarboxylates with primary amines.Prepared by a known procedure;² characteristics of previously unknown ester1b are given in the Experimental section.     

Synthesis of a New Cyclophane Host and Crystal Structures of Its Compounds with Neutral Guests

A new cyclophane host molecule 3 is prepared by connecting the oxygenatoms of two,-di(4-hydroxyphenyl)-1,4-diisopropylbenzene units withtwo trimethylene spacers. Solid-state structures are determined forcompounds of 3 with dichloromethane and p-xylene guests. The crystals of thetwo host-guest compounds are isomorphous.     

Physicochemical properties of π-π complexes of zinctetraphenylporphyrin with aromatic molecules

Features of the solvation of zinctetraphenylporphyrin (ZnTPP) in benzene, toluene,ortho-, meta-, andpara-xylenes were studied by a thermogravimetric method. The temperature ranges of the stability and the compositions of the corresponding specific - complexes were determined from the results of the thermogravimetric investigation of the crystallosolvates of the metalloporphyrin with the solvent molecules, and the energy characteristics of the intermolecular metalloporphyrin—solvent interactions were calculated.Institute of the Chemistry of Nonaqueous Solutions, Russian Academy of Sciences, 153018 Ivanovo. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 7, pp. 1545–1548, July, 1992.     

Quantum-chemical study of allylic compounds with two bonded heavy atoms

It has been shown by the CNDO method that the bathochromic shift of the long-wave absorption band in the transition from allylstannane to compounds of the type C=C-C-Sn-X and C=C-Sn-X (where X is a heavy atom) is connected with the formation of a low-energy vacant *_S-X orbital, localized mainly in the region of the Sn-X chemical bond, and of an occupied _Sn-X orbital, the energy of which is somewhat higher than of the _C-Sn orbital. The dependence of the position of the long-wave absorbance region on conformation is related to the fact that, in planar and nonplanar conformers, the long-wave transitions are of a different type ( * and *, respectively); the bathochromic shift is determined to a large degree by the difference in the energies of the highest occupied MO ( - ) in the s-trans form. In the nonplanar conformers the heavy atom orbitals interact with the -orbital of the ethylene moiety through the bridge group; this leads to a significant delocalization of the HOMO and to a considerable change in its energy. On the other hand, their interaction with the *-orbital in compounds of the C=C-C-Sn-X type is very low and does not favor the delocalization of lower vacant MO. In vinyldistannane the *-orbital is noticeably delocalized, due to the interaction with the *_Sn-Sn orbital in planar and with the *_Sn-Sn orbital in nonplanar conformers.N. D. Zelinskii Institute of Organic Chemistry, Russian Academy of Sciences, 117913 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 3, pp. 636–641, March, 1992.     

Molecular Orbital Calculations on the Electronic Structures of Some Arylhydrazones

The geometry and electronic structure of the parent formaldehyde hydrazone and some ethylcyanoacetate phenylhydrazones (ECPHs) are studied at the semiempirical level of MO theory using the AM1 method. The effect of substitution on the geometry of the hydrazone moiety is investigated. The optimized geometry of formaldehyde hydrazone is nonplanar while in the ECPHs the planarity of the hydrazone group and its coplanarity with the phenyl ring increase in the direction of the electron-attracting ability of the para substituent. This has been attributed to an increase in the p– conjugation between the lone pair of electrons on the amine nitrogen and the phenyl ring. Variations of ionization potentials and bond orders with the Hammett constant, _p , are examined and straight-line relationships are obtained. The results are correlated with the observed variations in the experimentally measured electrical conductivities of the studied compounds.     

Charge control of phenol complexation with unsaturated compounds containing organosilicon substituents. Thiophene derivatives

The frequency shifts of the O-H stretching modes and the resonance components _R of these shifts in the IR spectra of H-complexes of phenol with thiophene derivatives having organic and organosilicon substituents have been analyzed. Relationship of and _R parameters to values calculated by nonempirical methods that characterize the electronic effect of organic substituents on the effective charges of the thiophene ring atoms has been established. It has been shown that in the complexation of phenol (hard acid) with thiophene derivatives charge control prevails over frontier orbital control. The changes in the effective charges of the thiophene ring atoms due to the effect of organosilicon substituents have been calculated.For the previous publication of this series see Ref. 1.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2163–2168, December, 1994.This work was supported by the Russian Foundation for Basic Research, Project No. 93-03-18725.     

Reactivity of pyrrole pigments,XXI: Structure and reactivity of Cu(II) and Zn(II) bilindione chelates

Summary Several Mn, Cu, and Zn chelates of etiobiliverdin-IV-, mesobiliverdin-IX, and its dimethyl ester are studied. The results show that the chemical constitution of the Cu biliverdin chelate corresponds to a formal metal oxidation state of (II) coordinated to a neutral radical of the NH trideprotonated biliverdin. The reactivity of the Cu(II) bilindione chelates in nucleophilic solvents agrees with that expected for a neutral radical structure of the ligand; in CH₃OH, they undergo oxidation towards dimethoxybilipurpurins. The magnetic behaviour of Cu(II) etiobiliverdinate-IV- in the solid state shows an intramolecular weak antiferromagnetic coupling d⁹Cu-to--radical (J=–23 cm^–1) and an intermolecular weak antiferromagnetic coupling -radical-to--radical (J=–45 cm^–1). The analogy of this magnetic behaviour to that of the cation radical of metalloporphyrins is discussed.

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Reaktivität von Pyrrolpigmenten, 21. Mitt.: Struktur und Reaktivität von Cu(II)- und Zn(II)-Chelaten von Bilindionen

Zusammenfassung Einige Mn, Cu and Zn Chelate von Etiobiliverdin-IV-, Mesobiliverdin-IX und seinem Dimethylester werden untersucht. Im Komplex koordiniert ein Metallatom (mit der Formalladung II) mit einem Neutralradikal des dreifach NH-deprotonierten Bilindions. Die Reaktivität des Komplexes gegenüber nukleophilen Lösungmitteln entspricht erwartungsgemäß dem eines neutralen -Radikals; in CH₃OH wird er zu Dimethoxybilipurpurin oxidiert. Bei Cu(II)-Etiobiliverdinat-IV beobachtet man im festen Zustand neben schwacher, antiferromagnetischer Kupplung zwischen d⁹Cu und -Radikal (J=–23 cm^–1) auch eine schwache, intermolekulare, antiferromagnetische Wechselwirkung zwischen zwei -Radikalen (J=–45 cm^–1). Dieses magnetische Verhalten wird dem des -Kationradikals von Metalloporphyrinen gegenübergestellt.

     

Some peculiarities of π—π interactions between tetraphenylporphine metal complexes and aromatic solvents

The — complexes of metal tetraphenylporphinates with benzene, toluene, and xylenes were characterized by means of thermogravimetry. The ability of metalloporphyrins to form — complexes with certain -donor molecules depends largely on the -acceptor capacity of the macroheterocycle, and on the peculiarities of the metal—porphyrin coordinative linkage. Stoichiometry, energy parameters, and thermal stability of the - complexes of metalloporphyrins with various aromatic ligands are determined to a great extent by the molecular structure of solvents.Translated fromIzyestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp.850–853, May, 1993.     

Matrix effect on the retention in reversed-phase liquid chromatography

Summary A polymer-based, reversed-phase column (VA-C18), prepared by grafting octadecyl chain onto vinyl alcohol copolymer gel, was investigated for its chromatographic characteristics. n-Alkanes and n-alkyl alcohols were found to be retained only by hydrophobic interaction between the solutes and the octadecyl chain. In the case of aromatic hydrocarbons, in addition to the hydrophobic interaction, - interaction between the solutes and the based material was elucidated to contribute to the retention. For aromatic tertiary amines which are known to strongly interact with the residual silanol group of the silica-based reversed-phase columns to produce broadened and skewed peakes, the VA-C18 column also retained these substrates strongly by the combination of hydrophobic, -, and ionic interactions. In this case, however, symmetrical peaks were observed. From these results, it was determined that in the case of VA-C18, the base material was found not to produce undesirable effect although the solutes interact with the base. Further conclusion obtained was that in reversed phase liquid chromatography, chromatographic properties of base matrix is highly responsible for the overall retention.     

On the Distribution of π-Electrons into Rings of Conjugated Hydrocarbons Containing a Linear Polyacene Fragment

Summary. A method for assessing the -electron contents (EC) of rings of benzenoid hydrocarbons, based on the examination of their Kekulé structures, was recently put forward by Balaban and Randi. We now show that all hexagons belonging to a linear polyacene fragment of a conjugated hydrocarbon (not necessarily benzenoid) have mutually equal EC-values.     

Vibrational spectra and structure of “staircase” carbonyl π-complexes of transition metals

FTIR spectra have been studied for staircase cyclopentadienyl complexes containing two or three metal carbonyl fragments bound by the metal-carbon bond Cp(CO)₂Fe-CpmMn(CO)₃ (1), Cp(CO)₂Fe-CpmFe(CO)₂CH₂Ph (2), Cp(CO)₂Fe-Cpm(CO)₂Fe-CpmMn(CO)₃ (3), Cp(CO)₂Mo-Cpm(CO)₂Fe-CpmMn(CO)₃ (4), Cp(CO)₃W-Cpm(CO)₂Fe-CpmMn(CO)₃ (5), Cp(CO)₂Fe-Cpm(CO)₂Fe-BmCr(CO)₃ (6), Cr(CO)₃Bm-CpmFe(CO)₂CH₂Ph (7), where Cp = ₅-C₅H₅, Cpm = ¹⁵-C₅H₄, Bm = ¹⁶-C₆H₅. Temperature-dependent FTIR spectra were measured inn-pentane solutions over a wide temperature range and in the low-temperature solid matrices of argon and nitrogen. Rotamers, formed due to rotation about the metal-carbon -bond, were found in solutions and matrices. A molecular mechanics calculation of1 proved the possibility of such rotation.Translated fromIzyestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1952–1956, November, 1994.The authors are grateful to the Russian Foundation for Basic Research (project code No 93-03-18592) and to the International Science Foundation (project code No MEQ000).     

Solvent effects in electronically excited states using the continuum solvation model COSMO in combination with multireference configuration interaction with singles and doubles (MR-CISD)

An implementation of the COSMO continuum solvation model into the MCSCF and MR-CISD programs of the COLUMBUS program system is reported. Equilibrium solvation and non-equilibrium solvation models for the treatment of electronic excitations have been used. Solvatochromic effects have been computed for a representative set of n-* and -* states of formaldehyde, acrolein and pyrazine using several solvents ranging from some with apolar character to water. Agreement with experimental shifts is good within the limits of a continuum model.Contribution to the Jacopo Tomasi Honorary Issue     

Transition Metal Halide Salts of 1,3-bis(4-Pyridyl)propane: Synthesis and Structural Characterization

The resulting salts of (H₂bpp)MX₄ · n H₂O (M = Zn, X = Cl, n = 1, 1; M = Cd, X = Br, n = 0, 2; M = Hg, X = Cl, n = 1, 3; M = Cu, X = Cl, n = 0, 4; M = Cu, X = Br, n = 1, 5; M = Pt, X = Cl, n = 1, 6) were crystallized from the reaction mixture prepared by adding MX₂ to the HX solution of 1,3-bis(4-pyridyl)propane (bpp), while the salt of colorless (H₂bpp)SnCl₆, 7, was crystallized from the reaction mixture prepared by adding SnCl₂ to the HCl solution of bpp. Their structures have been determined by X-ray crystallography. All the compounds show supramolecular structures in the solid state by intermolecular hydrogen bondings and aromatic – interactions. The H₂bpp²⁺ cations in these metal salts adopt the gauche–gauche and anti–anti conformations with different dihedral angles for the two pyridyl rings.     

Quantum-chemical study of allylic and vinylic compounds of fifth-group elements

Energies and oscillator strengths of the long-wave electronic transitions for several conformers of allyl- and vinylamine and allyl- and vinylphosphine have been calculated by the semiempirical quantum-chemical MNDO method. The electronic structure of these molecules is discussed in detail, and the spectral and conformational effects ofn, and , conjugation are analyzed. Some suggestions concerning possible conjugation effects in the allylic compounds of As, Sb, and Bi are made.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1551–1554, September, 1993.     

Structural analysis of the KGD sequence loop of barbourin, an αIIbβ3-specific disintegrin

Disintegrins constitute a class of small proteins that inhibit platelet aggregation by binding to the fibrinogen receptor, also referred to as integrin _IIb3. Contrarily to other disintegrins that bind to a series of integrins via their Arg-Gly-Asp domain, the recognition site of barbourin contains a Lys-Gly-Asp sequence that ensures its specificity towards _IIb3. In this article, a three-dimensional model of barbourin is proposed using homology modeling and large-scale molecular dynamics simulations. The conformations of the Lys-Gly-Asp sequence of barbourin are analyzed and compared to those of peptidomimetics that exhibit similar specificity towards _IIb3. The tryptophan residue following the Lys-Gly-Asp sequence of the binding domain is shown to play a crucial role in the biological activity and the specificity of barbourin. Our results suggest that this disintegrin anchors to the binding pocket of the -chain of fibrinogen rather than to those of the Arg-Gly-Asp sequence.