Gas‐phase pyrolysis mechanisms of 3‐anilino‐1‐propanol: Density functional theory study

The gas‐phase pyrolytic decomposition mechanisms of 3‐anilino‐1‐propanol with the products of aniline, ethylene, and formaldehyde or N‐methyl aniline and aldehyde were studied by density functional theory. The geometries of the reactant, transition states, and intermediates were optimized at the B3LYP/6‐31G (d, p) level. Vibration analysis was carried out to confirm the transition state structures, and the intrinsic reaction coordinate method was performed to search the minimum energy path. Four possible reaction channels are shown, including two concerted reactions of direct pyrolytic decomposition and two indirect channels in which the reactant first becomes a ring‐like intermediate, followed by concerted pyrogenation. One of the concerted reactions in the direct pyrolytic decomposition has the lowest activation barrier among all the four channels, and so, it occurs more often than others. The results appear to be consistent with the experimental outcomes. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Density functional study of protonation sites of α‐Keggin isopolyanions

Density functional theory (DFT) calculations were carried out to characterize the optimal site of the protons and the precise protonation state in the polyoxometalate (POM) anions [V₁₃O₄₀]^15? and [H₁₂V₁₃O₄₀]^3?. Six kinds of possible protonated stable isomers with the whole Keggin anion units are discussed. The calculations reveal that the preferred protonation site corresponds to bridging oxygens that belong to the same trimetallic group (isomers B and C). Both isomers B and C are comparatively stable in the gas phase, but only isomer B could exist stably in aqueous solution because of being stabilized by the electrostatic interaction. The solvent effects and protonation are also discussed. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Palladium‐catalyzed carbonylative cyclization of β‐bromo‐α,β‐unsaturated carboxylic acids with primary amines leading to N‐alkylmaleimides

Cyclic β‐bromo‐α,β‐unsaturated carboxylic acids are carbonylatively cyclized with primary amines under carbon monoxide pressure in MeCN in the presence of a catalytic amount of PdCl₂(PPh₃)₂ to give N‐alkylmaleimides. Copyright © 2012 John Wiley & Sons, Ltd.     

Experimental and Theoretical Studies on the Rearrangement of 2‐Oxoazepane α,α‐Amino Acids into 2′‐Oxopiperidine β2,3,3‐Amino Acids: An Example of Intramolecular Catalysis

Enantiopure β‐amino acids represent interesting scaffolds for peptidomimetics, foldamers and bioactive compounds. However, the synthesis of highly substituted analogues is still a major challenge. Herein, we describe the spontaneous rearrangement of 4‐carboxy‐2‐oxoazepane α,α‐amino acids to lead to 2′‐oxopiperidine‐containing β^2,3,3‐amino acids, upon basic or acid hydrolysis of the 2‐oxoazepane α,α‐amino acid ester. Under acidic conditions, a totally stereoselective synthetic route has been developed. The reordering process involved the spontaneous breakdown of an amide bond, which typically requires strong conditions, and the formation of a new bond leading to the six‐membered heterocycle. A quantum mechanical study was carried out to obtain insight into the remarkable ease of this rearrangement, which occurs at room temperature, either in solution or upon storage of the 4‐carboxylic acid substituted 2‐oxoazepane derivatives. This theoretical study suggests that the rearrangement process occurs through a concerted mechanism, in which the energy of the transition states can be lowered by the participation of a catalytic water molecule. Interestingly, it also suggested a role for the carboxylic acid at position 4 of the 2‐oxoazepane ring, which facilitates this rearrangement, participating directly in the intramolecular catalysis.     

Density functional study of the conformers of Co4‐based single‐molecule magnet

We present a detailed density functional theory‐based investigation on the geometry and electronic structure of the [Co₄(hmp)₄(MeOH)₄Cl₄] molecule. It is experimentally found to behave as a molecular magnet. The all‐electron electronic structure calculations and geometry optimization of the 88‐atom molecule were carried out within the generalized gradient approximation to the exchange correlation energy. We also study the electronic structures and geometries of a few low‐lying conformers of this molecule. It is found that the magnetic anisotropy energy is highly sensitive to the geometric structure of the molecule. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 93: 324–331, 2003     

Tetramethyl‐m‐benziporphodimethene and Isomeric α,β‐Unsaturated γ‐Lactam Embedded N‐Confused Tetramethyl‐m‐benziporphodimethenes

The condensation reaction of α,α′‐dihydroxy‐1,3‐diisopropylbenzene, pyrrole, and an aldehyde leads to the formation of tetramethyl‐m‐benziporphodimethene and outer α‐pyrrolic carbon oxygenated N‐confused tetramethyl‐m‐benziporphodimethenes containing a γ‐lactam ring in the macrocycle. Two isomers with the carbonyl group of the lactam ring either close to (O‐Up) or away from (O‐Down) the neighboring sp³ meso carbon were synthesized and characterized. The single crystal X‐ray diffraction analysis on the regular and γ‐lactam containing tetramethyl‐m‐benziporphodimethenes showed highly distorted macrocycles for all compounds. For O‐Up and O‐Down isomers, dimeric structures, assembling by intermolecular hydrogen‐bonding interactions through lactam rings, were observed in the solid state. Fitting the concentration dependent chemical shifts of the outer NH proton using the non‐linear regression method give a maximum association constant of 108.9 M ^?1 for the meso 4‐methylcarboxyphenyl substituted O‐Down isomer. The DFT calculations concluded that the O‐Up isomer is energetically more stable, and the keto form is more stable than the enol form.     

Comment on “density and physical current density functional theory” by Xiao‐Yin Pan and Viraht Sahni

A recent paper by Xiao‐Yin Pan and Viraht Sahni [Int. J. Quant. Chem. 110, 2833 (2010)] claims that current density functional theory should be based on the physical current density rather than the paramagnetic current density, as in the standard Vignale‐Rasolt formulation. In this comment we show that the claims in the paper by Pan and Sahni are erroneous. © 2012 Wiley Periodicals, Inc.     

l‐Proline: an efficient N,O‐bidentate ligand for copper‐catalyzed intramolecular cyclization reaction of 2‐iodoanilines with nitriles for the synthesis of benzimidazoles

A novel and highly efficient copper‐catalyzed intramolecular cyclization reaction of 2‐iodoanilines with nitriles for the synthesis of benzimidazoles with l ‐proline as the ligand has been developed. A variety of substituted benzimidazole derivatives can be synthesized with high yields using this approach. Copyright © 2014 John Wiley & Sons, Ltd.     

Theoretical study on the reaction mechanisms and stereoselectivities of DABCO‐catalyzed Rauhut–Currier/cyclization reaction of methyl acrylate with 2‐benzoyl‐3‐phenyl‐acrylonitrile

With the aid of density functional theory (DFT) calculations, we have investigated the mechanisms and stereoselectivities of the tandem cross Rauhut–Currier/cyclization reaction of methyl acrylate R₁ with (E)‐2‐benzoyl‐3‐phenyl‐acrylonitrile R₂ catalyzed by a tertiary amine DABCO. The results of the DFT calculations indicate that the favorable mechanism (mechanism A) includes three steps: the first step is the nucleophilic attack of DABCO on R₁ to form intermediates Int1 and Int1‐1, the second step is the reaction of Int1 and Int1‐1 with R₂ to generate intermediate Int2(SS,RR,SR&RS), and the last step is an intramolecular S_N2 process to give the final product P(SS,RR,SR&RS) and release catalyst DABCO. The S_N2 substitution is computed to be the rate‐determining step, whereas the second step is the stereoselectivity‐determining step. The present study may be helpful for understanding the reaction mechanism of similar tandem reactions.     

Theoretical investigation on the detailed mechanism of the OH‐initiated atmospheric photooxidation of o‐xylene

The reaction mechanism for o‐xylene with OH radical and O₂ was studied by density functional theory (DFT) method. The geometries of the reactants, intermediates, transition states, and products were optimized at B3LYP/6‐31G(d,p) level. The corresponding vibration frequencies were calculated at the same level. The single‐point calculations for all the stationary points were carried out at the B3LYP/6‐311++G(2df,2pd) level using the B3LYP/6‐31G(d,p) optimized geometries. Reaction energies for the formation of the aromatic intermediate radicals have been obtained to determine their relative stability and reversibility, and their activation barriers have been analyzed to assess the energetically favorable pathways to propagate the o‐xylene oxidation. The results of the theoretical study indicate that OH addition to o‐xylene forms ipso, meta, and para isomers of o‐xylene‐OH adducts, and the ipso o‐xylene adduct is the most stable among these isomers. Oxygen is expected to add to the o‐xylene‐OH adducts forming o‐xylene peroxy radicals. And subsequent ring closure of the peroxyl radicals to form bicyclic radicals. With relatively low barriers, isomerization of the o‐xylene bicyclic radicals to more stable epoxide radicals likely occurs, competing with O₂ addition to form bicyclic peroxy radicals. The study provides thermochemical data for assessment of the photochemical production potential of ozone and formation of toxic products and secondary organic aerosol from o‐xylene photooxidation. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Theoretical Study on Gas—phase Pyrolytic Reactions of N—Ethyl,Isopropyl and N—t—Butyl Substituted 2—Aminopyrazine

Density functional theory (DFT) and ab initio methods were used to study gas‐phase pyrolytic reaction mechanisms of iV‐ethyl, N‐isopropyl and N‐t‐butyl substituted 2‐aminopyrazine at B3LYP/6–31G* and MP2/6–31G*, respectively. Single‐point energies of all optimized molecular geometries were calculated at B3LYP/6–311 + G(2d,p) level. Results show that the pyrolytic reactions were carried out through a unimolecular first‐order mechanism which were caused by the migration of atom H(17) via a six‐member ring transition state. The activation energies which were verified by vibrational analysis and correlated with zero‐point energies along the reaction channel at B3LYP/6–311 + G(2d,p) level were 252.02 kJ. mo^?1 (N‐ethyl substituted), 235.92 kJ‐mol^?1 (N‐t‐isopropyl substituted) and 234.27 kJ‐mol^?1 (N‐t‐butyl substituted), respectively. The results were in good agreement with available experimental data.     

Microwave‐Assisted Tandem Organocatalytic Peptide‐Coupling Intramolecular aza‐Michael Reaction: α,β‐Unsaturated N‐Acyl Pyrazoles as Michael Acceptors

Conjugated N‐acyl pyrazoles have been successfully employed in the organocatalytic enantioselective intramolecular aza‐Michael reaction as ester surrogates. Bifunctional squaramides under microwave irradiation provided the best results in this transformation. Furthermore, this protocol has been combined with a peptide‐coupling reaction in a tandem sequence. The final products were easily converted into the corresponding ethyl esters.     

Ligand‐Controlled α‐ and β‐Arylation of Acyclic N‐Boc Amines

The palladium‐catalyzed ligand‐controlled arylation of α‐zincated acyclic amines, obtained by directed α‐lithiation and transmetalation, is described. Whereas PtBu₃ gave rise to α‐arylated Boc‐protected amines, more flexible N‐phenylazole‐based phosphine ligands induced major β‐arylation through migrative cross‐coupling.     

N-甲基b-磺内酰胺氨解反应机理的理论研究

The aminolysis and the effect of water on the aminolysis processes of n-methyl β-sultam have been studied using density functional theory （DFF） method at the B3LYP/6-31G＊ level. The stationary structures and energies have been investigated for both reactions to find two different reaction channels. Specific and general solvent effects have been evaluated and the most favored pathway was found. The presence of solvent disfavors the reaction, whereas the participation of water in the aminolysis reaction plays a positive role and reduces the activation energy greatly. All transition states in the assisted aminolysis are 35-70 kJ/mol lower than those for the non-assisted reaction.     

Density Functional Theory Investigation on the Second‐Order Nonlinear Optical Properties of Chlorobenzyl‐o‐Carborane Derivatives

The structures and second‐order nonlinear optical (NLO) properties of a series of chlorobenzyl‐o‐carboranes derivatives ( 1 – 12 ) containing different push‐pull groups have been studied by density functional theory (DFT) calculation. Our theoretical calculations show that the static first hyperpolarizability (β_tot) values gradually increase with increasing the π‐conjugation length and the strength of electron donor group. Especially, compound 12 exhibits the largest β_tot (62.404×10^?30 esu) by introducing tetrathiafulvalene (TTF), which is about 76 times larger than that of compound 1 containing aryl. This means that the appropriate structural modification can substantially increase the first hyperpolarizabilities of the studied compounds. For the sake of understanding the origin of these large NLO responses, the frontier molecular orbitals (FMOs), electron density difference maps (EDDMs), orbital energy and electronic transition energy of the studied compounds are analyzed. According to the two‐state model, the lower transition energy plays an important role in increasing the first hyperpolarizability values. This study may evoke possible ways to design preferable NLO materials.     

Reactivation pathway of the hydrogenase H‐cluster: Density functional theory study

This work puts forth a reaction pathway for the reactivation of exogenous ligand inhibited H‐cluster, the active site of Fe‐only hydrogenases. The H‐cluster is a dimetal complex, Fe–Fe, with the metal centers bridged by di(thiomethyl)amine. Exogenous ligands, H₂O, and OH^?, are bound to the distal iron (Fe_d). Density functional theory (DFT) calculations on the native and ruthenium‐modified H‐cluster have been performed using the B3LYP functional with 6‐31+G** and 6‐311+G** basis sets. We have ascertained that there is a thermodynamically favorable pathway for the reactivation of the OH^? inhibited H‐cluster, which proceeds by an initial protonation of the Fe_d–OH^? complex. The proposed reaction pathway has all its intermediate reactions ensue exothermically. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Density functional theory study of mechanism of epoxy‐carboxylic acid curing reaction

A comprehensive picture on the mechanism of the epoxy‐carboxylic acid curing reactions is presented using the density functional theory B3LYP/6‐31G(d,p) and simplified physical molecular models to examine all possible reaction pathways. Carboxylic acid can act as its own promoter by using the OH group of an additional acid molecule to stabilize the transition states, and thus lower the rate‐limiting barriers by 45 kJ/mol. For comparison, in the uncatalyzed reaction, an epoxy ring is opened by a phenol with an apparent barrier of about 107 kJ/mol. In catalyzed reaction, catalysts facilitate the epoxy ring opening prior to curing that lowers the apparent barriers by 35 kJ/mol. However, this can be competed in highly basic catalysts such as amine‐based catalysts, where catalysts can enhance the nucleophilicity of the acid by forming hydrogen‐bonded complex with it. Our theoretical results predict the activation energy in the range of 71 to 94 kJ/mol, which agrees well with the reported experimental range for catalyzed reactions. © 2017 Wiley Periodicals, Inc.