Reaction mechanism of palladium‐catalyzed silastannation of allenes by density functional theory

The reaction mechanism of Pd(0)‐catalyzed allenes silastannation reaction is investigated by the density functional method B3LYP. The overall reaction mechanism is examined. For the allene insertion step, the Pd Si bond is preferred over the Pd Sn bond. The electronic mechanism of the allene insertion into Pd Si bond to form σ‐vinylpalladium (terminal‐insertion) and σ‐allylpalladium (internal‐insertion) insertion products is discussed in terms of the electron donation and back‐donation. It is found that the electron back‐donation is significant for both terminal‐ and internal‐insertion. During allene insertion into Pd Si bond, internal‐insertion is preferred over terminal‐insertion. By using methylallene, the regio‐selectivity for the monosubstituted allene insertion into Pd Si and Pd Sn bond is analyzed. © 2008 Wiley Periodicals, Inc. J Comput Chem 2009     

The monomolecular mechanism of the gas‐phase thermal decomposition of primary N‐nitramines

Using nonempirical methods and DFT‐methods the geometrical parameters formation enthalpies of molecules and radicals, energies dissociation of N? NO₂ bonds of primary and secondary N‐nitramines have been investigated. The basic tendencies in the changes of the geometrical and electronic structures, formation enthalpies, and dissociation energies have been analyzed in basic homologous series of nitramines. Various alternative mechanisms of the gas‐phase monomolecular thermal decomposition have been studied by of the example of N‐methylnitramine. The process of the aci‐form formation and its further multistage destruction is the most advantageous way of decomposition of the primary N‐nitramines. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

Computational study on the mechanism for the gas‐phase reaction of dimethyl disulfide with OH

The mechanisms for the reaction of CH₃SSCH₃ with OH radical are investigated at the QCISD(T)/6‐311++G(d,p)//B3LYP/6‐311++G(d,p) level of theory. Five channels have been obtained and six transition state structures have been located for the title reaction. The initial association between CH₃SSCH₃ and OH, which forms two low‐energy adducts named as CH₃S(OH)SCH₃ (IM1 and IM2), is confirmed to be a barrierless process, The S? S bond rupture and H? S bond formation of IM1 lead to the products P1(CH₃SH + CH₃SO) with a barrier height of 40.00 kJ mol^?1. The reaction energy of Path 1 is ?74.04 kJ mol^?1. P1 is the most abundant in view of both thermodynamics and dynamics. In addition, IMs can lead to the products P2 (CH₃S + CH₃SOH), P3 (H₂O + CH₂S + CH₃S), P4 (CH₃ + CH₃SSOH), and P5 (CH₄ + CH₃SSO) by addition‐elimination or hydrogen abstraction mechanism. All products are thermodynamically favorable except for P4 (CH₃ + CH₃SSOH). The reaction energies of Path 2, Path 3, Path 4, and Path 5 are ?28.42, ?46.90, 28.03, and ?89.47 kJ mol^?1, respectively. Path 5 is the least favorable channel despite its largest exothermicity (?89.47 kJ mol^?1) because this process must undergo two barriers of TS5 (109.0 kJ mol^?1) and TS6 (25.49 kJ mol^?1). Hopefully, the results presented in this study may provide helpful information on deep insight into the reaction mechanism. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

A theoretical study of imine hydrocyanation catalyzed by halogen‐bonding

A detailed theoretical study of the mechanism and energetics of an organocatalysis based on C?N activation by halogen‐bonding is presented for the hydrocyanation of N‐benzylidenemethylamine. The calculations at the level of scalar‐relativistic gradient‐corrected density functional theory give an insight in this catalytic concept and provide information on the characteristics of four different monodentate catalyst candidates acting as halogen‐bond donors during the reaction. © 2015 Wiley Periodicals, Inc.     

煤焦催化HCN还原NO的反应机理

通过量子化学密度泛函理论研究了均相和煤焦催化的HCN还原NO反应机理,计算了反应动力学参数。结果表明,均相还原反应的活化能为306 kJ/mol,而煤焦催化的NO还原反应的活化能为136 kJ/mol。典型再燃温度1 400 K下,HCN异相还原NO的反应速率略小于煤焦异相还原NO的反应速率;HCN参与下的煤焦异相还原NO反应较CO参与下的煤焦异相促还原NO反应更易发生。各组分的吸附顺序对HCN异相还原NO的反应有明显的影响;在典型再燃温度下,NO先吸附时煤焦表面的异相还原反应速率常数为5.28×10~(10),比HCN先吸附时最快反应路径的反应速率常数大一个数量级。煤焦对NO还原具有显著的催化作用;煤焦表面作为NO的还原反应位点,对反应气体具有明显的活化作用。     

Kinetics and mechanism of the gas‐phase OH hydrogen abstraction reaction from methionine: A quantum mechanical approach

Unrestricted density functional theory (BHandHLYP) calculations have been performed, using the 6‐311G(d,p) basis sets, to study the gas‐phase OH hydrogen abstraction reaction from methionine. The structures of the different stationary points are discussed. Ring‐like structures are found for all the transition states. Reaction profiles are modeled including the formation of prereactive complexes, and negative net activation energy is obtained for the gamma H‐abstraction channel. A complex mechanism is proposed, and the rate coefficients are calculated using transition state theory over the temperature range 250–350 K. The rate coefficients are proposed for the first time and it was found that in gas phase the hydrogen abstraction occurs almost exclusively from the gamma site. The large overall rate coefficient for the methionine + OH reaction compared to other free amino acids could explain the significant role of methionine in the oxidative processes. The following expressions in [L/(mol s)] are obtained for the alpha, beta, and gamma H‐abstraction channels, and for the overall temperature‐dependent rate constants, respectively: k_α = (3.42 ± 0.11) × 10⁸ exp[(?1118 ± 9)/T], k_β = (1.13 ± 0.03) × 10⁸ exp[(?1070 ± 8)/T], k_γ = (2.11 ± 0.26) × 10⁷ exp[(2049 ± 34)/T], and k_tot = (2.12 ± 0.26) × 10⁷ exp[(2047 ± 34)/T]. © 2003 Wiley Periodicals, Inc. Int J Chem Kinet 35: 212–221, 2003     

Kinetics and mechanism of thermal gas‐phase elimination of 2‐aryloxyacetic acid

Rates of thermal gas‐phase elimination of eleven 2‐aryloxyacetic acid have been measured over a 45°C temperature range for each compound. Hammett correlation of the present kinetic data with the literature σ⁰ values of the given substituents gave a reaction ρ constant of 0.69 at 600 K; this is more than that for the gas‐phase elimination parameter of 2‐aryloxypropanoic acid (ρ = 0.26) and consistent with a transition state with some charge separation, suggesting a partial formation of carbocation. The implications of this observation for the thermal gas‐phase elimination of α‐aryloxycarboxylic acids are considered. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 612–616, 2001     

The gas‐phase oxidation of n‐hexadecane

Since n‐hexadecane or cetane is a reference fuel for the estimation of cetane numbers in diesel engines, a detailed chemical model of its gas‐phase oxidation and combustion will help to enhance diesel performance and reduce the emission of pollutants at their outlet. However, until recently the gas‐phase reactions of n‐hexadecane had not been experimentally studied, prohibiting a validation of oxidation models which could be written. This paper presents a modeling study of the oxidation of n‐hexadecane based on experiments performed in a jet‐stirred reactor, at temperatures ranging from 1000 to 1250 K, 1‐atm pressure, a constant mean residence time of 0.07 s, and high degree of nitrogen dilution (0.03 mol% of fuel) for equivalence ratios equal to 0.5, 1, and 1.5. A detailed kinetic mechanism was automatically generated by using the computer package (EXGAS) developed in Nancy. The long linear chain of this alkane necessitates the use of a detailed secondary mechanism for the consumption of the alkenes formed as a result of primary parent fuel decomposition. This high‐temperature mechanism includes 1787 reactions and 265 species, featuring satisfactory agreement for both the consumption of reactants and the formation of products. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 574–586, 2001     

Quantitative reproducibility of mass spectra in matrix‐assisted laser desorption ionization and unraveling of the mechanism for gas‐phase peptide ion formation

In a previous study on matrix‐assisted laser desorption ionization (MALDI) of peptides using α‐cyano‐4‐hydroxycinnamic acid (CHCA) as a matrix, we found that the patterns of single‐shot spectra obtained under different experimental conditions became similar upon temperature selection. In this paper, we report that absolute ion abundances are also similar in temperature‐selected MALDI spectra, even when laser fluence is varied. The result that has been obtained using CHCA and 2,5‐dihydroxybenzoic acid as matrices is in disagreement with the hypothesis of laser‐induced ionization of matrix as the mechanism for primary ion formation in MALDI. We also report that the total number of ions in such a spectrum is unaffected by the identity, concentration and number of analytes, i.e. it is the same as that in the spectrum of pure matrix. We propose that the generation of gas‐phase ions in MALDI can be explained in terms of two thermal reactions, i.e. the autoprotolysis of matrix molecules and the matrix‐to‐analyte proton transfer, both of which are in quasi‐equilibrium in the early matrix plume. Copyright © 2013 John Wiley & Sons, Ltd.     

Mechanism for the gas‐phase hydrogen fluoride‐mediated decomposition of peroxyacetyl nitrate (PAN) studied by DFT method

Density functional theory has been used to study the mechanism of the decomposition of peroxyacetyl nitrate (CH₃C(O)OONO₂) in hydrogen fluoride clusters containing one to three hydrogen fluoride molecules at the B3LYP/6‐311++G(d,p) and B3LYP/6‐311+G(3df,3pd) levels. The calculations clarify some of the uncertainties in the mechanism of PAN decomposition in the gas phase. The energy barrier decreases from 30.5 kcal mol^?1 (single hydrogen fluoride) to essentially 18.5 kcal mol^?1 when catalyzed by three hydrogen fluoride molecules. As the size of the hydrogen fluoride cluster is increased, PAN shows increasing ionization along the O? N bond, consistent with the proposed predissociation in which the electrophilicity of the nitrogen atom is enhanced. This reaction is found to proceed through an attack of a fluorine to the PAN nitrogen in concert with a proton transfer to a PAN oxygen. On the basis of our calculations, an alternative reaction mechanism for the decomposition of PAN is proposed. © 2009 Wiley Periodicals, Inc. Int J Quantum Chem, 2010     

UV laser‐induced gas‐phase polymerization of ethynyltrimethylsilane

ArF laser photolysis of gaseous ethynyltrimethylsilane allows a controlled polymerization at the triple bond and represents a unique photopolymerization in the absence of photoinitiators, which is suitable for chemical vapour deposition of solid poly(trimethylsilylhydrocarbon) films.     

Semiempirical simulation of a theta‐class glutathione S‐transferase‐catalyzed glutathione attack to the allelochemical DIMBOA

We evaluated by the semiempirical method PM3 possible mechanisms of a putative interaction between a cereal allelochemical, the cyclic hydroxamic acid 2,4‐dihydroxy‐7‐metoxy‐2H‐1,4‐benzoxazin‐3(4H)‐one (DIMBOA), and the tripeptide glutathione (GSH) inside the active site of a theta‐class glutathione S‐transferase. Based on a preliminary study of transition states from DIMBOA reactions with methanethiolate as a simple model of GSH, we investigated the roles of catalytic residues of the enzyme during nucleophilic additions of GSH to the carbonyl groups of DIMBOA and of its phenol/aldehyde isomer inside the active site model. Our results suggest that a tyrosine residue, Tyr113, makes the most important contributions for the catalytic mechanism. In the modeled reaction steps, Tyr113 behaves as a double hydrogen bond donor catalyst for nucleophilic additions of GSH to substrates: It initially helps stabilize the strongly nucleophilic reduced GSH with a hydrogen bond intermediated by a water molecule; during substrate approach, small conformational changes enable the residue to make a direct hydrogen bond to the substrate group that develop negative charge after addition of reduced GSH. © 2002 Wiley Periodicals, Inc.; Int J Quantum Chem, 2002     

DFT study of the gas‐phase thermal decomposition kinetics of 2‐ethoxypyridine into 2‐pyridone

The mechanism of the gas‐phase elimination kinetics of 2‐ethoxypyridine has been studied through the electronic structure calculations using density functional methods: B3LYP/6‐31G(d,p), B3LYP/6‐31++G(d,p), B3PW91/6‐31G(d,p), B3PW91/6‐31++G(d,p), MPW1PW91/6‐31G(d,p), MPW1PW91/6‐31++G(d,p), PBEPBE/6‐31G(d,p), PBEPBE/6‐31++G(d,p), PBE1PBE1/6‐31G(d,p), and PBE1PBE1/6‐31++G(d,p). The elimination reaction of 2‐ethoxypyridine occurs through a six‐centered transition state geometry involving the pyridine nitrogen, the substituted carbon of the aromatic ring, the ethoxy oxygen, two carbons of the ethoxy group, and a hydrogen atom, which migrates from the ethoxy group to the nitrogen to give 2‐pyridone and ethylene. The reaction mechanism appears to occur with the participation of π‐electrons, similar to alkyl vinyl ether elimination reaction, with simultaneous ethylene formation and hydrogen migration to the pyridine nitrogen producing 2‐pyridone. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Photochromism of diarylethenes linked by hydrogen bonds in the single-crystalline phase

Photochromic diarylethenes, which bear carboxyl groups at the ortho, meta, or para positions of both terminal phenyl groups, have been synthesized. The diarylethenes adopt linear chain structures as a result of hydrogen bonding in the crystalline phase, and the crystals exhibit photochromic properties. The absorption maximum of the photogenerated closed-ring isomer of the para-substituted derivative shows an 80 nm bathochromic shift in comparison with that of the ortho-substituted derivative. The maximum of the closed-ring isomer of the meta-substituted derivative is located in between those of the para- and ortho-substituted derivatives. The shifts can be attributed to the differences in conformation among the derivatives, arising from the restrictions imposed by the hydrogen-bonded chains.     

Temperature‐dependent rate coefficients and mechanism for the gas‐phase reaction of chlorine atoms with acetone

The rate coefficient for the gas‐phase reaction of chlorine atoms with acetone was determined as a function of temperature (273–363 K) and pressure (0.002–700 Torr) using complementary absolute and relative rate methods. Absolute rate measurements were performed at the low‐pressure regime (～2 mTorr), employing the very low pressure reactor coupled with quadrupole mass spectrometry (VLPR/QMS) technique. The absolute rate coefficient was given by the Arrhenius expression k(T) = (1.68 ± 0.27) × 10^?11 exp[?(608 ± 16)/T] cm³ molecule^?1 s^?1 and k(298 K) = (2.17 ± 0.19) × 10^?12 cm³ molecule^?1 s^?1. The quoted uncertainties are the 2σ (95% level of confidence), including estimated systematic uncertainties. The hydrogen abstraction pathway leading to HCl was the predominant pathway, whereas the reaction channel of acetyl chloride formation (CH₃C(O)Cl) was determined to be less than 0.1%. In addition, relative rate measurements were performed by employing a static thermostated photochemical reactor coupled with FTIR spectroscopy (TPCR/FTIR) technique. The reactions of Cl atoms with CHF₂CH₂OH (3) and ClCH₂CH₂Cl (4) were used as reference reactions with k₃(T) = (2.61 ± 0.49) × 10^?11 exp[?(662 ± 60)/T] and k₄(T) = (4.93 ± 0.96) × 10^?11 exp[?(1087 ± 68)/T] cm³ molecule^?1 s^?1, respectively. The relative rate coefficients were independent of pressure over the range 30–700 Torr, and the temperature dependence was given by the expression k(T) = (3.43 ± 0.75) × 10^?11 exp[?(830 ± 68)/T] cm³ molecule^?1 s^?1 and k(298 K) = (2.18 ± 0.03) × 10^?12 cm³ molecule^?1 s^?1. The quoted errors limits (2σ) are at the 95% level of confidence and do not include systematic uncertainties. © 2010 Wiley Periodicals, Inc. Int J Chem Kinet 42: 724–734, 2010     

Theoretical study of the mechanism for the gas‐phase pyrolysis kinetics of 2‐methylbenzyl chloride

The study of the kinetics and mechanism of dehydrochlorination reaction of 2‐methyl benzyl chloride in the gas phase was carried out by means of electronic structure calculations using ab initio Móller‐Plesset MP2/6‐31G(d,p), and Density Functional Theory (DFT) methods: B3LYP/6‐31G(d,p), B3LYP/6‐31++G(d,p), MPW1PW91/6‐31G(d,p), MPW1PW91/6‐31++G(d,p)], PBE/6‐31G(d,p), PBE/6‐31++G(d,p). Investigated reaction pathways comprise: Mechanism I, a concerted reaction through a six‐centered cyclic transition state (TS) geometry; Mechanism II, a 1,3‐chlorine shift followed by beta‐elimination and Mechanism III, a single‐step elimination with simultaneous HCl and benzocyclobutene formation through a bicyclic type of TS. Calculated parameters ruled out Mechanism III and suggest the elimination reaction may occur by either unimolecular Mechanism I or Mechanism II. However, the TS of the former is 20 kJ/mole more stable than the TS of the latter. Consequently, the Mechanism I seem to be more probable to occur. The rate‐determining process is the breaking of C‐Cl bond. The involvement of π‐electrons of the aromatic system was demonstrated by NBO charges and bond order calculations. The reaction is moderately polar in nature. © 2011 Wiley Periodicals, Inc. Int J Chem Kinet 43: 537–546, 2011     

Controlled ring‐opening polymerization of propylene oxide catalyzed by double metal‐cyanide complex

A double metal‐cyanide catalyst based on Zn₃[Co(CN)₆]₂ was prepared. This catalyst is very effective for the ring‐opening polymerization of propylene oxide. Polyether polyols of moderate molecular weight having low unsaturation (<0.015 meq/g) can be prepared under mild conditions. The molecular weight of polymer is entirely controlled by a reacted monomer‐to‐initiator ratio. The polymers prepared with stepwise addition of monomer exhibit a narrower molecular weight distribution as compared with those prepared with one‐step addition of monomer. Various compounds containing active hydrogen, except basic compounds and low‐carbon carboxylic acid, may be used as initiators. The reaction rate increases with increasing catalyst amount and decreases with rising initiator concentration. Polymerization involves a rapid exchange reaction between the active species and the dormant species. It was also proven that, to a certain extent, the chain termination of this catalytic system is reversible or temporary. ¹³C NMR analysis showed that the polymer has a random distribution of the configurational sequences and head‐to‐tail regiosequence. It is assumed that the polymerization proceeds via a cationic coordination mechanism. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 1142–1150, 2002     

Kinetics and mechanism of the thermal gas‐phase oxidation of perfluorobutene‐2 in presence of trifluoromethyl hypofluorite

The oxidation of perfluorobutene‐2 (C₄F₈) initiated by trifluoromethyl hypofluorite (CF₃OF) in presence of O₂ has been studied at 323.1, 332.6, 342.5, and 352.0 K, using a conventional static system. The initial pressure of CF₃OF was varied between 4.8 and 23.6 Torr, that of C₄F₈ between 48.7 and 302.4 Torr, and that of O₂ between 51.5 and 270.4 Torr. Several runs were made in presence of 325.5–451.2 Torr of N₂. The main products were COF₂, CF₃C(O)F, and CF₃OC(O)F. Small amounts of compound containing ? CF(CF₃)? O? C(O)CF₃ group were also formed, as detected by ¹³C NMR spectroscopy. The oxidation is a homogeneous short‐chain reaction, attaining, at the pressure of O₂ used, the pseudo‐zero‐order condition with respect to O₂ as reactant. The reaction is independent of the total pressure. Its basic steps are as follows: the thermal generation of CF₃O^? radicals by the abstraction of fluorine atom of CF₃OF by C₄F₈, the addition of CF₃O^? to the alkene, the formation of perfluoroalkoxy radicals RO^? in presence of O₂, and the decomposition of these radicals via the C? C bond scission, giving products containing ? C(O)F end group and reforming RO^? and CF₃O^? radicals. The mechanism consistent with experimental results is postulated. © 2003 Wiley Periodicals, Inc. Int J Chem Kinet 35: 532–541, 2003     

Peroxidase‐catalyzed electrochemical assay of hydrogen peroxide: A ping–pong mechanism

In view of the great importance of determination of hydrogen peroxide in many scientific fields and industrial applications and the attractive operational simplicity of potentiometric approach for the enzymatic assay, the kinetics of horseradish peroxidase–catalyzed electrochemical assay of H₂O₂ was studied in this work at 25°C. All kinetic characteristics were determined by the double reciprocal Lineweaver–Burk and (primary and secondary) double reciprocal Hanes–Woolf plots. The results confirmed that the reaction follows a ping–pong mechanism. The Michaelis–Menten constants for H₂O₂ and 4‐fluorophenol were K_m = 0.081 ± 0.001 mM and K^4‐FP_m = 0.185 ± 0.002 mM, respectively. The maximum rate was also estimated to be V_max = 0.182 ± 0.002 mM min^?1 (at 25 ± 0.05°C). © 2012 Wiley Periodicals, Inc. Int J Chem Kinet 44: 699–704, 2012     

Mechanism for the gas‐phase reaction between OH and 3‐methylfuran: A theoretical study

The mechanism for the OH + 3‐methylfuran reaction has been studied via ab initio calculations to investigate various reaction pathways on the doublet potential energy surface. Optimizations of the reactants, products, intermediates, and transition structures are conducted using the MP2 level of theory with the 6‐311G(d,p) basis set. The single‐point electronic energy of each optimized geometry is refined with G3MP2 and G3MP2B3 calculations. The theoretical study suggests that the OH + 3‐methylfuran reaction is dominated by the formation of HC(O)CH?C(CH₃)CHOH (P7) and CH(OH)CH?C(CH₃)C(O)H (P9), formed from two low‐lying adducts, IM1 and IM2. The direct hydrogen abstraction pathways and the S_N2 reaction may play a minor or negligible role in the overall reaction of OH with 3‐methylfuran. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008