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1.
The gas-phase basicities of serine and dipeptides containing amino acid residues of serine and glycine were determined by proton transfer reactions in a Fourier transform ion cyclotron resonance mass spectrometer. The gas-phase basicity (GB) of L-serine was found to be 205.9 kcal/mol, with addition of a hydroxymethyl group (?CH2OH) increasing the basicity by 4.5 kcal/mol relative to the simplest amino acid glycine (GB = 201.4 kcal/mol). This is attributed to a combination of intramolecular hydrogen bonding, induction, and symmetry effects. For the dipeptides, addition of a hydroxymethyl group does not result in a large increase in basicity relative to the basicity of glycylglycine (GB = 208.0 kcal/mol). The gas-phase basicities determined for glycyl-l-serine, l-serylglycine, and l-sery-l-serine are 209.3,210.6, and 210.9 kcal/mol, respectively. In comparison to glycylglycine, addition of the hydroxymethyl group at the N terminus has a greater impact on basicity than its placement at the C terminus. These data suggest that the protonation site for these dipeptides is the N-terminal amino nitrogen.  相似文献   

2.
A non-empirical quantum chemical calculation of isomeric 3,6-divinyl-3,4,5,6-tetrahydropyrrolo[3,2-e] indole 1 and 1,5-divinyl-1,4,5,8-tetrahydro[3,2-f]indole 2 structures carried out by DFT (B3LYP) method with 6-311++G(d, p) and 6-311++G(3df, p) basis sets showed the energy preference of 2 over 1 (1.33 kcal/mol and 1.47 kcal/mol, respectively). The structure of the molecule of 2 is planar while the molecule of 1 is non-planar due to the presence of sp 3-hybridized carbon atoms.  相似文献   

3.
Dicarba-closo-dodecaborane (carborane) has received much attention as a building block for supramolecular assemblies and bioactive compounds. Among the carborane isomers, 1,2-dicarba-closo-dodecaborane (o-carborane) has unique chemical properties, including the ability of the o-carborane C-H hydrogens to form H-bonds. We have designed and synthesized 1-(2-methoxyphenyl)-o-carborane 1a to study its ability to form an intramolecular H-bond between the o-carborane C-H hydrogen and various H-bond acceptors both in solution and in the solid state. Intramolecular H-bonding ability in solution was evaluated by means of 1H NMR spectroscopic measurements of the C-H hydrogen signal. The signal of the C-H hydrogen of 1a showed a remarkable downfield shift in CDCl3 and various other solvents, i.e., the shift was almost solvent-independent. We suggest that 1a forms an intramolecular H-bond in these solvents. Crystal structure analysis of 1a showed a C-H?O distance of 2.05 Å and a nearly planar torsion angle C(2)-C(1)-C(7)-C(8) of 6.5°, indicating intramolecular C-H?O H-bond formation in the solid state. The crystal packing of 1a indicates that a supramolecular array is stabilized by cooperative π-π stacking interactions among the methoxyphenyl groups and by hydrophobic interactions of the o-carborane cages. DFT calculations indicate that the strength of the intramolecular H-bond of 1a is about 3.53 kcal/mol. These observations indicate the potential value of o-carborane in supramolecular chemistry and materials chemistry; it should be possible to design novel materials by utilizing both the H-bonding ability of the o-carborane C-H hydrogen and the high hydrophobicity of the o-carborane cage.  相似文献   

4.
Searching for stable sulfur–carbon triply bonded molecules has been of great interest from both the fundamental and applied viewpoints. The known polyatomic sulfur–carbon triply bonded molecules are usually not the global minima. Here, we report a potential energy surface investigation of a tetra-atomic molecule [S,C,B,O] in both doublet and quartet states. The B3LYP and M06-2X methodologies with 6-311+G(3df,2p) and aug-cc-pVTZ basis sets were applied for geometrical optimization and CCSD(T)/aug-cc-pVTZ for single-point energy calculations. The thermodynamically most stable isomer is the linear SCBO 01 (0.0 kcal/mol). Kinetically, SCBO 01 is separated from the other isomers and fragments by the rather high barriers of at least 44.7 kcal/mol. In particular, isomer SCBO 01 contains a typical carbon–sulfur triple bond based on the systematic analysis from the structure, vibrational frequency, molecular orbital, Wiberg bond index, and adiabatic bond dissociation energy. In addition, there exists a second low-lying isomer, i.e., linear SBCO 02 (7.3 kcal/mol) with S≡B triple bonding, whose kinetic stability is governed by its fragmentation to 2SB+1CO (30.4 kcal/mol). The remaining isomers are either kinetically unstable with low conversion barriers or energetically very high lying. We propose that the simple two-body association between SC and BO, SB and CO pairs can preferentially lead to the formation and stabilization of SCBO 01 and SBCO 02, respectively. The isomer SCBO 01, which is the global structure and extraordinarily stable against both isomerization and fragmentation, strongly deserves future laboratory studies.  相似文献   

5.
We have obtained accurate heats of formation for the twenty natural amino acids by means of explicitly correlated high-level thermochemical procedures. Our best theoretical heats of formation, obtained by means of the ab initio W1-F12 and W2-F12 thermochemical protocols, differ significantly (RMSD = 2.3 kcal/mol, maximum deviation 4.6 kcal/mol) from recently reported values using the lower-cost G3(MP2) method. With the more recent G4(MP2) procedure, RMSD drops slightly to 1.8 kcal/mol, while full G4 theory offers a more significant improvement to 0.72 kcal/mol (max. dev. 1.4 kcal/mol for glutamine). The economical G4(MP2)-6X protocol performs equivalently at RMSD = 0.71 kcal/mol (max. dev. 1.6 kcal/mol for arginine and glutamine). Our calculations are in excellent agreement with experiment for glycine, alanine and are in excellent agreement with the recent revised value for methionine, but suggest revisions by several kcal/mol for valine, proline, phenylalanine, and cysteine, in the latter case confirming a recent proposed revision. Our best heats of formation at 298 K ( $\Delta H_{f,298}^{\circ }$ ) are as follows: at the W2-F12 level: glycine ?94.1, alanine $-$ 101.5, serine $-$ 139.2, cysteine $-$ 94.5, and methionine $-$ 102.4  kcal/mol, and at the W1-F12 level: arginine $-$ 98.8, asparagine $-$ 146.5, aspartic acid $-$ 189.6, glutamine $-$ 151.0, glutamic acid $-$ 195.5, histidine $-$ 69.8, isoleucine $-$ 118.3, leucine $-$ 118.8, lysine $-$ 110.0, phenylalanine $-$ 76.9, proline $-$ 92.8, threonine $-$ 149.0, and valine $-$ 113.6 kcal/mol. For the two largest amino acids, an average over G4, G4(MP2)-6X, and CBS-QB3 yields best estimates of $-$ 58.4 kcal/mol for tryptophan, and of $-$ 117.5 kcal/mol for tyrosine. For glycine, we were able to obtain a “quasi-W4” result corresponding to $\hbox {TAE}_e$  = 968.1, $\hbox {TAE}_0$  = 918.6, $\Delta H_{f,298}^{\circ }=-90.0$ , and $\Delta H_{f,298}^{\circ }=-94.0$  kcal/mol.  相似文献   

6.
Two novel terpyridine-based chromophores with D-A (D = donor, A = acceptor) structural model containing modified triphenylamine moiety (L1 and L2 ) have been conveniently synthesized via formylation and reduction in satisfactory yields, and fully characterized. The single crystals of them were obtained and determined by X-ray diffraction analysis. The relationships between structure and photophysical properties of the two chromophores were investigated both experimentally and theoretically. The measured maximum TPA cross-sections per molecular weight (δmax /MW) of the chromophores are 0.63 GM/(g mol) (L1) and 0.72 GM/(g mol) (L2), respectively, in DMF as a high polar solvent. The results indicate that the value of δmax/MW could be well tuned by the intramolecular charge transfer (ICT), which could be realized by introducing additional elecron-donor/acceptor groups.  相似文献   

7.
Conformational analysis of eight-membered P,N-heterocycles (P2NR2R') in the solution has been performed by means of NMR spectroscopy and quantum chemical calculations. The equilibrium of the С2-symmetrical (crown, major) and Сs-symmetrical (chair-boat, minor) forms of the compounds has been revealed, the transition barriers being of about 12 kcal/mol. The presence of an aromatic substituent at the nitrogen atom significantly shifts the equilibrium towards the dominating form.  相似文献   

8.
Stereoselective (exo-specific) synthesis, dynamic 1H NMR and computational analysis of exo-N??-{3-azatricyclo[3.2.1.0.2,4]oct-3-yl)mesithyloxy)methylene}-1-benzensulfunamide (3) were investigated. Aziridine nitrogen inversion gives rise to two sets of configurations where the N-substituent is Syn (S) or Anti (A) to C7 of the norbornyl ring. At lower temperature, the proton signals of aziridine exo-E-3 decoalesces to show two syn conformers and one anti conformer (exo-E-3 1 S ? $ \leftrightharpoons $ ?exo-E-3 2 S ? $ \leftrightharpoons $ ?exo-E-3 3 A ) with ratio of 60:20:20, respectively. Experimentally, the Gibbs free energy of activations [??G ? (kcal/mol) ?±?0.08] were calculated 11.96, 12.45 for 3 isomerizations. The standard Gibbs free energy (??G o kcal/mol) 0.174, 0, 0.174, and 0.298 at 213?K and energy minimum 6.64, 4.77 and 1.78 were calculated for 3 1S? $ \leftrightharpoons $ ?3 2S, 3 2S? $ \leftrightharpoons $ ?3 3 A , 3 1 S? $ \leftrightharpoons $ ?3 3 A isomerizations, respectively. The enthalpy (??H ?, kcal/mol) and entropy (??S ?, cal?mol?1?K?1) of activation for the nitrogen inversion of aziridine of 3 were calculated 11.2 and ?0.80, respectively.  相似文献   

9.
Energetic, geometric and magnetic criteria were applied to examine the stability and/or aromatic character for the cyclic molecules C 4 H 4 M (M = O, S, Se, Te, NH, PH, AsH and SbH) at B3LYP/6-311++G** and MP2/6-311++G** levels of theory. The isodesmic reactions and nuclear independent chemical shifts (NICS) calculations were utilized to examine the molecules for energetic and magnetic criteria, respectively. The isodesmic reaction energies reveal that thiophene (C 4 H 4 S, ?23.269 kcal/mol) and pyrrole (C 4 H 4 NH, ?20.804 kcal/mol) have the greatest aromatic stabilization energies and tellurophene (C 4 H 4 Te, ?15.114 kcal/mol) and stibole (C 4 H 4 SbH, ?1.169 kcal/mol) have the lowest aromatic stabilization energies in their corresponding groups at MP2/6-311++G**. The NICS calculations confirmed the results obtained through isodesmic reaction energies.  相似文献   

10.
The reaction of symmetrical (thio)barbituric acids with aldehydes in the presence of 4-methyl morpholine yielded a new form of 4-methyl morpholinium bis-(thio)barbiturate containing charge-separated intermolecular and eight-membered intramolecular H-bonds. X-ray Crystallography, FT-IR, and 1H and 13C-NMR spectroscopy techniques were used for structure characterizations. Some of these compounds showed potent anticancer activities. Cytotoxicity of the synthetic compounds against HeLa and MCF-7 cell lines were performed by MTT assay. In addition, a comparative molecular field analysis was carried out, and the effects of substituents on the biological activities of these compounds were explained.  相似文献   

11.
The mechanism of reaction of the di-Ru-substituted polyoxometalate, {??-[(H2O)RuIII(??-OH)2RuIII(H2O)][X n+W10O36]}(8?n)?, I_X, with O2, i.e. I_X?+?O2????{??-[(·O)RuIV(??-OH)2RuIV(O·)][X n+W10O36]}(8?n)??+?2H2O, (1), was studied at the B3LYP density functional and self-consistent reaction field IEF-PCM (in aqueous solution) levels of theory. The effect of the nature of heteroatom X (where X?=?Si, P and, S) on the calculated energies and mechanism of the reaction (1) was elucidated. It was shown that the nature of X only slightly affects the reactivity of I_X with O2, which is a 4-electron oxidation process. The overall reaction (1): (a) proceeds with moderate energy barriers for all studied X??s [the calculated rate-determining barriers are X?=?Si (18.7?kcal/mol)?<?S (20.6?kcal/mol)?<?P (27.2?kcal/mol) in water, and X?=?S (18.7?kcal/mol)?<?P (21.4?kcal/mol)?<?Si (23.1?kcal/mol) in the gas phase] and (b) is exothermic [by X?=?Si [28.7 (22.1) kcal/mol]?>?P [21.4 (9.8) kcal/mol]?>?S [12.3 (5.0) kcal/mol]. The resulting $ \left\{ {\gamma - \left[ {\left( {^{ \cdot } {\text{O}}} \right) {\text{Ru}}^{\text{IV}} \left( {\mu - {\text{OH}}} \right)_{2} {\text{Ru}}^{\text{IV}} \left( {{\text{O}}^{ \cdot } } \right)} \right]\left[ {{\text{X}}^{{{\text{n}} + }} {\text{W}}_{10} {\text{O}}_{36} } \right]} \right\}^{{\left( {8 - {\text{n}}} \right) - }} $ , VI_X, complex was found to have two RuIV?=?O· units, rather than RuV?=?O units. The ??reverse?? reaction, i.e., water oxidation by VI_X is an endothermic process and unlikely to occur for X?=?Si and P, while it could occur for X?=?S under specific conditions. The lack of reactivity of VI_X biradical toward the water molecule leads to the formation of the stable [{Ru 4 IV O4(OH)2(H2O)4}[(??-XW10O36]2}m? dimer. This conclusion is consistent with our experimental findings; previously we prepared the $ \left[ {\left\{ {{\text{Ru}}_{4}^{\text{IV}} {\text{O}}_{4} ({\text{OH}})_{2} \left( {{\text{H}}_{ 2} {\text{O}}} \right)_{4} } \right\}} \right[\left( {\gamma - {\text{XW}}_{10} {\text{O}}_{36} } \right]_{2} \}^{{{\text{m}} - }} $ dimers for X?=?Si (m?=?10) [Geletii et al. in Angew Chem Int Ed 47:3896?C3899, 2008 and J Am Chem Soc 131:17360?C17370, 2009] and P (m?=?8) [Besson et al. in Chem Comm 46:2784?C2786, 2010] and showed them to be very stable and efficient catalysts for the oxidation of water to O2.  相似文献   

12.
Formation of a H-bond with an amide carbonyl oxygen atom increases the strength of subsequent H-bonds formed by the amide NH, due to polarisation of the bond. The magnitude of this effect has been quantified by measuring association constants for the formation of 1 : 1 complexes of 2-hydroxylbenzamides with tri-n-butyl phosphine oxide. In 2-hydroxybenzamides, there is an intramolecular H-bond between the phenol OH group and the carbonyl oxygen atom. Comparison of the association constants measured for compounds with and without the 2-hydroxy group allows direct quantification of the effect of the intramolecular H-bond on the H-bond donor properties of the amide NH group. Substituents were used to modulate the strength of the intramolecular and intermolecular H-bonds. The presence of an intramolecular H-bond increases the strength of the intermolecular H-bond by more than one order of magnitude in n-octane solution. The increase in the H-bond donor parameter used to describe the amide NH group is directly proportional to the H-bond donor parameter of the phenol OH group that makes the intramolecular H-bond. These polarisation effects will lead to substantial cooperativity in complex systems that feature networks of non-covalent interactions, and the measurements described here provide a quantitative basis for understanding such phenomena.

Formation of an intramolecular phenol-amide H-bond leads to a dramatic increase in the H-bond donor strength of the amide NH group. Polarisation of the amide group is directly proportional to the polarity of the phenol H-bond donor.  相似文献   

13.
The Gibbs energies of deprotonation Δr G 298 of gaseous benzoic acid (BA), benzenesulfonic acid (BSA) and their six mono-, di-, and trinitro-substituted derivatives are calculated by means of B3LYP/cc-pVTZ and MP2/6-311++G**. The dependences of Δr G 298 on the number and the position of nitro groups in an aromatic ring are revealed, as is the possibility of intramolecular hydrogen bond (IHB) formation in ortho-substituted acids. It is found that the deprotonation of conformers of ortho-nitro-substituted BSA without IHBs requires less energy (by 4–5 kcal/mol) than for conformers with IHBs. It is shown that the Δr G 298 values for substituted BA are ~22 kcal/mol higher than the corresponding values for substituted BSA. A trend of diminishing Δr G 298 for nitro-substituted acids is observed when the number of nitro groups is increased, and di- and trinitro-substituted BSA may therefore be considered superstrong acids.  相似文献   

14.
Activation barriers for fast 1,3-N,N' migrations of phenylmercury groups in the corresponding derivatives of N,N'-di(p-tolyl)form(benz)amidines have been calculated by density functional theory B3LYP/Gen, 6-311++G(d,p)/SDD to be ΔE ZPE = 4.5 and 3.0 kcal/mol. The results correspond to the data of dynamic NMR, which have shown the upper limit of activation barriers of these rearrangements (ΔG) to be below 8 kcal/mol. The calculations have shown that the most stable is the E-syn form of N-phenylmercury-N,N'-di(p-tolyl)form(benz)amidines stabilized by supplementary intramolecular coordination of mercury atom with imine nitrogen atom of the amidine triad.  相似文献   

15.
Dynamic NMR has revealed intramolecular migrations of hydrogen atom over the periphery of the five-membered ring in 5-(p-tolyl)-1,2,3,4-tetraphenylcyclopentadiene in a deuteronitrobenzene solution with energy barrier ΔG 180 = 24.8 kcal/mol. Quantum-chemical DFT calculations B3LYP/6-311++G** have shown that such migrations in 1,2,3,4,5-pentaphenylcyclopentadiene in the gas phase occur in a chiral conformation of propeller type by the mechanism of 1,5-sigmatropic hydrogen shifts with retention of configuration through asymmetric transition state with energy barrier ΔE ZPE = 25.9 kcal/mol. Enantiomers P and M can readily interconvert into each other (ΔE ZPE = 3.9 kcal/mol) owing to synchronous flip rotations of the phenyl groups.  相似文献   

16.
The molecular geometry and electronic structure of stable organic derivatives of divalent germanium and tin, [(Me3Si)2N-M-OCH2CH2NMe2]n (M = Ge (4), n = 1; M = Sn (5), n =2) and their isomers with broken (4a, 5a) and closed (4b, 5b) intramolecular coordination bonds M←NMe2, were studied by the density functional (PBE/TZ2P/SBK-JC) and NBO methods. Factors responsible for stability of their dimers 4c and 5c were established. Dimerization of 5b in the gas phase is a thermodynamically favorable process (ΔG 0 = ?2.1 kcal mol?1) while that of 4b is thermally forbidden (ΔG 0 = 10.1 kcal mol?1), which is consistent with experimental data. The M←NMe2 coordination bond energies, ΔE 0, were found to be ?5.3 and ?8.6 kcal mol?1 for M = Ge and Sn, respectively. NBO analysis showed that the metal atoms M in molecules 4 and 5 are weakly hybridized. The lone electron pairs of the M atoms have strong s-character while vacant orbitals of these atoms, LP* M, are represented exclusively by the metal npz-AOs. The strongest orbital interactions between subunits in dimers 4c and 5c involve electron density donation from the lone electron pairs of oxygen atoms (LP O) to the LP* M orbitals.  相似文献   

17.
Density functional calculations were performed with the nonempirically constructed PBE functional and TZ2p basis set to study the potential energy surfaces of several dibenzenechromium derivatives containing methy1 and tert-buty1 groups in aromatic ligands. The method was shown to correctly describe the structure and intramolecular dynamics of bis-arenechromium complexes. It allows barriers to rotation about the metal-ligand bond to be calculated and detailed information to be obtained about the shape of the potential curves that correspond to this rotation. The potential energy surfaces of polymethylated dibenzenechromium derivatives contained several minima close in energy; these minima largely corresponded to eclipsed conformers. The potential curves for rotation about the metal-ligand bond in dibenzenechromium and its methylated derivatives reveal the presence of staggered conformers as transition states. Irrespective of the number of methyl groups present in both ligands, we observed no substantial changes in barrier heights, which were about 1 kcal/mol. Conversely, the introduction of bulky tert-butyl groups destabilized eclipsed conformations. Ensuing steric strain caused substantial out-of-ring-plane displacements of the Cipso-t-Bu bonds away from the chromium atom, distorted aromatic ring planarity, and substantially increased barriers to rotation, to 8–10 kcal/mol.  相似文献   

18.
Density functional theory [DFT B3LYP/6-311++G(d,p)] simulation has revealed stable tautomers and conformers of polydentate ligand system based on 5,7-di(tert-butyl)-2-(8-hydroxyquinolin-2-yl)-1,3-tropolone with different structures of the coordination nodes, capable of formation of metal chelates. It has been shown that the tautomeric NH- and OH- forms with exo and endo location of the hydroxy group in the quinoline fragments (close in energy, ΔEZPE = 0.2–2.4 kcal/mol) are stabilized by intramolecular hydrogen bonds. Energy barriers of the interconversion of these forms via rotation about the C–OH bond of the phenolic fragment are of ΔEZPE = 2.1–4.2 kcal/mol, whereas the barrier of rotation about the bond between the quinoline and tropolone fragments is higher (ΔEZPE = 18.2 and 19.6 kcal/mol).  相似文献   

19.
Crown ethers 1–4, encompassing a photoemittive benzothiazole chromophore have been synthesised using standard protocols. Alkali metal picrate extraction profiles reveal that compared to the known crown ethers, benzothiazole benzo-15-crown-5 1 and benzothiazole dibenzo-18-crown-6 3 exhibit relatively higher % extraction for K+ than Na+ ions. The UV-visible and fluorescence spectra of 1–4, in comparison to their neutral forms were found to be red shifted on protonation due to enhanced intramolecular charge transfer transition. The ortho-substituted benzothiazole crowns 2–4 showed higher Stokes shifts compared to the para analog 1 in the presence of CF3CO2H, presumably due to H-bond assisted conformational restriction. No changes were noticeable in the absorption spectra in the presence of alkali metal ions. Even, fluorescence properties of 1–4 were not found to be drastically perturbed by these ions. While 1 exhibited slight quenching at alkali metal ion concentration over 10-folds with respect to that of 1, interestingly, 2–4 showed a slight enhancement of fluorescent intensity at least up to 10-fold concentration of metal ions over those of 2–4. Further increase of metal ion concentrations produces quenching effects. This behavior has been tentatively explained by invoking electrostatic interaction between these cations and the benzothiazole nitrogen ligand.  相似文献   

20.
The Co(II) complexes I and II were prepared in nonaqueous solvents containing cyanate with pyrazolylpyridine ligands, namely, bis-2,6-(pyrazol-1-yl) pyridine (Pp) and bis-2,6-(3,5-dimethyl-pyrazol-1-yl) pyridine (Dmpp), respectively. These complexes were characterized with elemental analysis, IR spectroscopy, and X-ray diffraction techniques. X-ray diffraction study revealed that complex I was mononuclear and complex II was dinuclear and ionic. The ionic complex II has an octahedral cationic coordination sphere and a tetrahedral anionic coordination sphere. Thermogravimetry results showed that the thermal decomposition is starting with the carbon content of the pyrazolyl rings.  相似文献   

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