A turning point in proteome analysis: sample prefractionation via multicompartment electrolyzers with isoelectric membranes

Sample prefractionation, as obtained via multicompartment electrolyzers with isoelectric membranes, greatly enhanced the load ability, resolution and detection sensitivity of two-dimensional (2-D) maps in proteome analysis. This was demonstrated with different samples. In an Escherichia coli total cell extract, analysis by a 2-D map run in a pH 4-5 gradient showed many more spots when prefractionated, as compared with standard maps available in databases such as SWISS-2DPAGE. Analysis of human plasma in the pH 3-6 range showed an increase in the number of highly acidic proteins in the fractionated sample compared to whole plasma. With both samples no protein precipitation or smears occurred and much larger sample amounts could be loaded upon prefractionation, so that a large number of spots could be visualized by Coomassie staining, which is fully compatible with subsequent matrix assisted laser desorption/ionization-time of flight (MALDI-TOF) analysis.     

Preparative-scale isoelectric focusing separation of enantiomers using a multicompartment electrolyzer with isoelectric membranes

The IsoPrime multicompartment electrolyzer, equipped with a series of isoelectric membranes with closely spaced pI values, was used for the first time for the preparative-scale separation of the enantiomers of dansyl phenylalanine with hydroxypropyl beta-cyclodextrin as resolving agent. The final separation conditions could be established easily in three successive experiments by rationally narrowing the pH steps between the neighboring isoelectric membranes. The final separation yielded products with an enantiomeric excess greater than 99.9%, at production rates of about 0.1 mg/h. The greatest experimental difficulty was caused by the relatively high salt content of the hydroxypropyl beta-cyclodextrin used, which resulted in high conductivity and limited the maximum field strength one could use.     

Ti/IrO2 as anode and Zr as cathode in multicompartment electrolyzers with Immobiline membranes.

Multicompartment electrolyzers with isoelectric Immobiline membranes are used for large-scale preparative protein purification. A series of isoelectric membranes, of defined pI values, is utilized for keeping any desired species isoelectric within each compartment of the electrolyzer. It is preferable to have electrode disks of the same surface area as the membranes for a proper performance of the instrument because electrolyte solutions of low conductivity are used. The use of Pt disks would be quite expensive; we therefore propose using Zr as a cathode and Ti/IrO2 as an anode in the electrodic compartments. This pairing of electrodes seems to give the same performance as Pt wires. Also, conventional isoelectric focusing, as well as isoelectric focusing in immobilized pH gradients, both requiring a good contact area between gel and electrodes, would benefit by using flat laminae of these metals as electrodes.     

Preparative separation of pyrogens from proteins by isoelectric focusing using a multicompartment electrolyser with Immobiline membranes

Due to the nature of lipopolysaccharide endotoxin structures of bacterial pyrogens, their removal from solutions containing therapeutic proteins is often a problem in the pharmaceutical industry. In this report we describe the application of electromotive force to dislodge lipopolysaccharide endotoxins from proteins. This was performed by employing a multicompartment electrolyzer fitted with Immobiline membranes of specified pIs. A thousand-fold reduction of endotoxin could be achieved in the model test system described. This contribution describes the use of a new recycling isoelectric focusing approach without the use of carrier ampholytes.     

Mass spectrometry and NMR analysis of ligand binding by human liver fatty acid binding protein

Human liver fatty acid binding protein (hL‐FABP) is the most abundant cytosolic protein in the liver. This protein plays important roles associated to partitioning of fatty acids (FAs) to specific metabolic pathways, nuclear signaling and protection against oxidative damage. The protein displays promiscuous binding properties and can bind two internal ligands, unlike FABPs from other tissues. Different topologies for the ligand located in the more accessible site have been reported, with either a ‘head‐in’ or ‘head‐out’ orientation of the carboxylate end. Electrospray‐ionization mass spectrometry and nuclear magnetic resonance titrations are employed here in order to investigate in further detail the binding properties of this system, the equilibria established in solution and the pH dependence of the complexes. The results are consistent with two binding sites with different affinity and a unique head‐out topology for the second molecule of either ligand. Competition experiments indicate a higher affinity for oleic acid relative to palmitic acid at each binding site. Copyright © 2013 John Wiley & Sons, Ltd.     

Purification to single isoforms of a secreted epidermal growth factor receptor in a multicompartment electrolyzer with isoelectric membranes.

A purified, size-homogeneous (100 kDa), desialylated form of a truncated, soluble form of the epidermal growth factor receptor secreted by A431 human tumor cells has been found, by isoelectric focusing in immobilized pH gradients, to consist of two major isoforms (with pIs of 6.96 and 6.71), one intermediate form (pI 6.45) and a number (> 10) of minor components. The two major components have been purified to charge homogeneity by isoelectric focusing in a multicompartment electrolyzer with buffering isoelectric membranes having the following pI values: 5.90, 6.63, 6.76, 6.92, 7.05 and 7.35. Such single pI species are presently used for attempts at crystal growing.     

Z(basic)--a novel purification tag for efficient protein recovery

A positively charged protein domain, Z(basic), can be used as a general purification tag to achieve efficient recovery of recombinantly produced target proteins using cation-exchange chromatography. To construct a protein domain usable for ion-exchange chromatography, the surface of protein Z was engineered to be highly charged, which allowed for selective capture of target proteins on a cation-exchanger at physiological pH values. Interestingly, the novel domain, denoted Z(basic), was shown to be selective also under denaturing conditions and could preferably be used for purification of proteins solubilised from inclusion bodies. Moreover, a flexible process for solid-phase refolding was developed, using Z(basic) as a reversible linker to the cation-exchanger resin. This procedure has the inherited advantage of combining purification and refolding into a single step and still enabling elution of a concentrated product in a suitable buffer. This article summarizes development and use of the Z(basic) tag in small and pilot-plant-scale downstream processing.     

High-performance liquid chromatographic determination of fatty acid binding proteins in rat liver with fluorescence detection.

A highly sensitive, simple and reproducible method for the quantitative determination of fatty acid binding protein in rat liver by post-column high-performance liquid chromatography with fluorescence detection is presented. Fatty acid binding protein in rat liver cytosols is separated by gel-permeation column chromatography, which is followed by fluorescence detection. The detection makes use of the fluorescence enhancement observed when a fluorescent fatty acid probe, dansylundecanoic acid, binds to fatty acid binding protein. The method is rapid, simple to perform and highly sensitive. The method was applied to the determination of fatty acid binding protein in liver from control and hypolipidaemic drug treated rats.     

Luminescent cyclometalated platinum(II) complexes with amino acid ligands for protein binding

Pt(C/N)(phe)(1, C/N = 2-(2'-thienyl)pyridine, phe = phenylalanine) shows a high binding affinity (ca. 10(6) dm(3) mol(-1)) and selectivity towards human serum albumin (HSA) and such binding is accompanied by an enhancement of photoluminescence at 562 nm; both the protein binding affinity and cytotoxicities of [Pt(C/N)(phe)(1), Pt(C/N)(trp)(2, trp = tryptophan) and Pt(C/N)(gly)(3, gly = glycine)] are affected by the amino acid ligand with having an IC(50) of up to 1 microM against a number of carcinoma cell lines.     

An application of fast protein liquid chromatography (FPLC) in the purification of retinol binding protein from rat serum

Summary Retinol Binding Protein (RBP) is the specific plasma protein for the transport of retinol from liver to peripheral tissues. It is a single polypeptide chain of approximately 21 KDa, and circulates as a 11 molar complex with transthyretin (TTR). The relative low concentration in plasma (40–50 g/ml and its chromatographic behaviour on ionic exchangers render the purification of rat RBP particularly laborious. In this paper we report a simple and semi-automatic method for the preparative purification to homogeneity of rat serum RBP. The method includes: (1) Selective removal of albumin by affinity chromatography on a Blue Sepharose column; (2) Chromatography on a Mono Q strong anion exchange column; (3) Dissociation of the RBP-TTR complex by 3 M urea; (4) Concentration, desalting and freeze drying. The purified RBP has been used for the production in rabbit of antirat RBP specific antibodies for studies on nutritional control of RBP synthesis and metabolism.     

Composition of the fatty acid fraction of zeins with various degrees of purification

It has been shown that maize zeins are associated with lipids mainly of saturated nature. The process of quantitative repression of prolamines in maize grain under the action of the mutant gene opaque-2 is accompanied by a change in the associative properties with substances of lipid nature. A covalent nature of the zein polypeptide-lipid (fatty acid) bond is suggested.Scientific-Research Institute of Biology, Dnepropetrovsk State University. Translated from Khimiya Prirodnykh Soedinenii, No. 2, pp. 187–189, March–April, 1990.     

Capillary zone electrophoresis for monitoring r-DNA protein purification in multi-compartment electrolysers with immobiline membranes

Isoforms of human monoclonal antibodies against the gp-41 of AIDS virus and of human recombinant superoxide dismutase have been purified to homogeneity by isoelectric focusing (IEF) in a multi-compartment electrolyser with isoelectric, immobiline membranes. This system allows the processing of large sample volumes and gram-scale protein loads and can resolve isoforms as close as 0.001 in pI difference. The purification progress was usually monitored by analytical IEF in immobilized pH gradients (IPG). Capillary zone electrophoresis (CZE) was applied to the monitoring of the content of each chamber of the electrolyser. CZE was found to be superior in terms of speed of analysis and quantification (but only by UV reading at 200-210 nm, i.e., in the region of the peptide bond) but, notwithstanding the millions of theoretical plates reported, was no match for the resolving power of IPGs, at least for protein analysis. When compared also with chromatofocusing, the resolving power decreases in the order IPG greater than CZE much greater than chromatofocusing.     

Crystallization kinetics of virgin and processed poly(lactic acid)

Poly(lactic acid) (PLA) is an emerging material mainly because it can be synthesized from renewable resources and is thus environmentally and ecologically safe. The mechanical properties, above all the thermal resistance of PLA are determined by the crystalline content: the heat deflection temperature of crystalline PLA can reach 100 °C, whereas amorphous PLA loses mechanical properties at temperatures slightly higher than 60 °C. However, PLA has a low crystallization rate, so that after processing it remains mostly amorphous. This characteristic heavily limits the use of PLA for commercial applications. Many studies have been recently published on the crystallization kinetics of PLA. The effect of processing on this feature is however often neglected. In this work, the significance of processing on the crystallization kinetics of a commercial PLA was investigated. Two processing methods were explored: extrusion and injection moulding. The obtained materials, and the starting pellets of virgin polymer, were analyzed by calorimetry in order to obtain the crystallization kinetics. Two protocols were adopted to determine the crystallization rates during cooling from the melt or heating from the solid. The parameters of a kinetic equation were determined for all the materials and protocols adopted and it was thus possible to describe the evolution of crystallinity during heating and during cooling.     

A disulfide bridge allows for site-selective binding in liver bile acid binding protein thereby stabilising the orientation of key amino acid side chains

The presence of a disulfide bridge in liver bile acid binding protein (L-BABP/S-S) allows for site-selective binding of two bile acids, glycochenodeoxycholic (GCDA) and glycocholic acid (GCA), differing only in the presence of a hydroxyl group. The protein form devoid of the disulfide bridge (L-BABP) binds both bile salts without discriminating ability. We investigate the determinants of the molecular recognition process in the formation of the heterotypic L-BABP/S-S complex with GCA and GCDA located in the superficial and inner protein sites, respectively. The comparison of the NMR spectroscopy structure of heterotypic holo L-BABP/S-S, the first reported for this protein family, with that of the homotypic L-BABP complex demonstrates that the introduction of a S-S link between adjacent strands changes the conformation of three key residues, which function as hot-spot mediators of molecular discrimination. The favoured χ(1) rotameric states (t, g(+) and g(-) for E99, Q100 and E109 residues, respectively) allow the onset of an extended intramolecular hydrogen-bond network and the consequent stabilisation of the side-chain orientation of a buried histidine, which is capable of anchoring a specific ligand.     

Crystallization of poly(N-methyldodecano-12-lactam) in blends with poly(styrene-stat-acrylic acid)

Crystallization behaviour of blends of poly(N-methyldodecano-12-lactam) (PMDL) with statistical copolymer poly(styrene-stat-acrylic acid) (PSAA) has been studied by the DSC and WAXD methods. The blend films prepared from dioxane solutions were crystallized at laboratory temperature for five days. Approximate crystallinities of as-prepared neat lower- PMDL 5 and higher-molecular weight PMDL 45 were 28% and 19%, respectively. With increasing PSAA content in the blends the crystallinities decreased sharply. The melting point of the primary crystalline structure of PMDL showed a decreasing dependence on PSAA content in the blends, confirming miscibility of the PMDL-PSAA pair. Recrystallization was strongly suppressed in the blends. The lower-melting endotherm appearing at about 10-15 °C above the crystallization temperature was attributed to melting to less perfect structures formed during secondary crystallization. In neat PMDL, the extent of secondary crystallization was approximately 5-10%. In the blends containing 20% PSAA approximate relative proportion of secondary crystallites on total crystallinity was 40% and 60% for the blends with PMDL 5 and PMDL 45, respectively. WAXD measurements did not reveal any change in crystal modification on blending. Increased T_g in blends of flexible PMDL cannot play a significant role in suppression of primary in favour of secondary crystallization. This was attributed to low mobility of PMDL chains due to dilution effect and specific interactions with the amorphous copolymer component, and, in case of the higher-molecular-weight PMDL, a greater involvement of entanglements. Higher T_g of blends was involved in retardation of non-isothermal crystallization on cooling and subsequent cold crystallization.     

The Crystallization and Melting Processes of Poly(L-lactic acid)

A throughout investigation of crystallization and melting behavior of poly(L -lactic acid) is detailed in this contribution. Crystallization analyses, conducted in both isothermal and non-isothermal conditions, revealed the occurrence of a sudden acceleration in phase transition rate in the temperature range between 100 and 118 °C. This unusual increase, due to very high rates of spherulite growth, seems not related to morphological changes of PLLA spherulites, nor to unexpected variations in nucleation rate. DSC analyses disclosed multiple melting behavior of PLLA, depending on crystallization temperature. At low temperatures the very high crystallization rates lead to the achievement of low values of crystalline degree, with formation of small and/or defective crystals, which have a large tendency to reorganize into more stable structures during the heating scan that leads to complete fusion. The multiple melting process of PLLA was also analyzed at different heating rates.     

Characterization and purification of fatty acid methyl esters from the liver oil of the deep sea shark (Centrophorus squamosus) by gas chromatography-mass spectrometry and countercurrent chromatography

Summary In the course of our studies on the location of marine products, we have directed our attention to the saponifiable fraction of the liver oil from the deep sea shark (Centrophorus squamosus). Different analytical and preparative techniques, such as high-performance liquid chromatography (HPLC), countercurrent chromatography (CCC), and gas chromatography-mass spectrometry [GC-MS, electron impact (EI) and positive-ion chemical ionization (PCI)] were used. These methods allowed us to characterize, after various derivatizations, most of the fatty acids formed after the saponification of the oil, and to purify two of them, namely: docosahexaenoic acid (DHA or 226) and docosamonoenoic acid (DMA or 221).     

Crystallization kinetics and morphology of poly(lactic acid) with polysaccharide as nucleating agent

Journal of Thermal Analysis and Calorimetry - An ever-increasing concern about environmental pollution has spearheaded research into alternative biodegradable polymers. Currently, poly(lactic acid)...