Electron capture ion mobility spectrometry for the selective detection of chlorinated and brominated species after capillary gas chromatography

This paper reports the first investigation of electron capture ion mobility spectrometry as a detection method for capillary gas chromatography. In previous work with negative ion mobility detection after gas chromatography, the principal reactant ion species were O₂^? or hydrated O₂^? due to the presence of oxygen in the drift gas. These molecular reactant ions have a mobility similar to chloride and bromide ions, which are the principal product ions formed by most halogenated organics via dissociative ion-molecule reactions. Oxygenated reactant ions thus interfere with the selective detection of chloride and bromide product ions. A recently described ion mobility detector design efficiently eliminated ambient impurities, including oxygen, from infiltrating the ionization region of the detector; consequently, in the negative mode of operation, the ionization species with N₂ drift gas were thermalized electrons. Thermalized electrons have a high mobility and their drift time occupies a region of the ion mobility spectrum not occupied by chloride, bromide, or other product ions. The result was improved selectivity for halogenated organics which ionize by dissociative electron capture. This was demonstrated by the selective detection of 4,4′-dibromobiphenyl from the components of a polychlorinated biphenyl mixture (Aroclor 1248).     

Spectroscopic characterization of a microplasma used as ionization source for ion mobility spectrometry

We report a miniaturized excitation source for soft ionization of molecules based on a dielectric barrier discharge. An atmospheric plasma is established at the end of a 500 μm diameter capillary using He as buffer gas. The plasma jet which comes out of the capillary is dependent on the gas flow rate. The mechanism of the production of N₂⁺ outside the capillary, which is relevant for the protonation of molecules and sustains the production of primary ions, is investigated by spatially resolved spectroscopic measurements throughout the plasma. Possible application of such miniaturized plasmas is the ionization of gaseous compounds under atmospheric pressure as an alternative to traditional APCI (atmospheric pressure chemical ionization). The miniaturized plasma was applied as ionization source for ion mobility spectrometry where the common sources are radioactive, thus limiting the place of installation. First measurements of gaseous compounds with such a plasma ion mobility spectrometer with promising results showed detection limits comparable or even better than those obtained using common radioactive ionization sources.     

An NO+ reactant ion source for ion mobility spectrometry

The major reactant ion in conventional ion mobility spectrometry (IMS) is the hydronium ion, H₃O⁺ which is produced in the usual ionization sources such as corona discharge or radioactive sources. Using the hydronium reactant ion, mostly the analytes with proton affinity higher than that of water are ionized. A broader range of compounds can be detected by IMS if other alternative ionization channels, such as charge transfer from NO⁺, are employed. In this work we introduce a simple and novel method for producing NO⁺ as the major reactant ion in IMS. This was achieved by adding neutral NO to the corona discharge ionization source. The neutral NO was prepared via an additional discharge in an air stream, flowing into the corona discharge source. A curtain plate was mounted in front of the corona discharge to prevent the influence of the analyte on the production of NO⁺. Using this technique, the reactant ion could easily and quickly switch between the H₃O⁺ and NO⁺. The performance of the new source was evaluated by recording ion mobility spectra of test compounds with both H₃O⁺ and NO⁺ reactant ions.     

An ion trap-ion mobility-time of flight mass spectrometer with three ion sources for ion/ion reactions

This instrument combines the capabilities of ion/ion reactions with ion mobility (IM) and time-of-flight (TOF) measurements for conformation studies and top-down analysis of large biomolecules. Ubiquitin ions from either of two electrospray ionization (ESI) sources are stored in a three dimensional (3D) ion trap (IT) and reacted with negative ions from atmospheric sampling glow discharge ionization (ASGDI). The proton transfer reaction products are then separated by IM and analyzed via a TOF mass analyzer. In this way, ubiquitin +7 ions are converted to lower charge states down to +1; the ions in lower charge states tend to be in compact conformations with cross sections down to ～880 Ų. The duration and magnitude of the ion ejection pulse on the IT exit and the entrance voltage on the IM drift tube can affect the measured distribution of conformers for ubiquitin +7 and +6. Alternatively, protein ions are fragmented by collision-induced dissociation (CID) in the IT, followed by ion/ion reactions to reduce the charge states of the CID product ions, thus simplifying assignment of charge states and fragments using the mobility-resolved tandem mass spectrum. Instrument characteristics and the use of a new ion trap controller and software modifications to control the entire instrument are described.     

Exploring and modeling the ion mobility spectrometry of perindopril: Example of protonation-dissociation reactions in large molecules

The current research is constructed for considering the chemical ionization and dissociation of perindopril in the positive mode of corona discharge ion mobility spectrometry. Four product ion peaks are observed in the ion mobility spectrum of perindopril erbumine at the cell temperature of 473 K. These peaks are assigned through the obtained intensity variation analysis in the ion mobility spectra over the elapsed time accompanied by the calculations backed by the validated density functional theory (DFT). In this regard, the most stable ionic species associated with each peak and the corresponding reliable generation pathways are found by the well-confirmed meta hybrid density functional method, M06-2X. The peaks are assigned to the protonated perindopril and its dissociation products, including counter ion and the related fragment ions. However, the structures of the neutral perindopril in the gas phase are thoroughly assessed to find a more stable one. The predicted chemical ionization products by the theory are in excellent agreement with our presented experiment here. Theoretical evaluations demonstrated that the production of a fragment by dissociation process occurs when perindopril gets a proton from the ionization region. Also, without protons, there is no dissociation process. Therefore, our mechanism investigated here is the proton transfer one. All possible sites of perindopril are considered theoretically for protonation along with their possible reactions. In addition to the computed PES, the assigned ions for obtained spectra are confirmed by the computed equilibrium constants and rate constants. Our theoretical results show that the peak of the main fragment is for M-CH₃CH₂OH produced by a reaction pathway involving no barrier. This study opens new perspectives in interpreting large molecules spectra for future studies.     

Negative ion production from peptides and proteins by matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry

Negative ion production from peptides and proteins was investigated by matrix‐assisted laser desorption/ionization time‐of‐flight (MALDI‐TOF) mass spectrometry. Although most research on peptide and protein identification with ionization by MALDI has involved the detection of positive ions, for some acidic peptides protonated molecules are not easily formed because the side chains of acidic residues are more likely to lose a proton and form a deprotonated species. After investigating more than 30 peptides and proteins in both positive and negative ion modes, [M–H]⁻ ions were detected in the negative ion mode for all peptides and proteins although the matrix used was 2,5‐dihydroxybenzoic acid (DHB), which is a good proton donor and favors the positive ion mode production of [M+H]⁺ ions. Even for highly basic peptides without an acidic site, such as myosin kinase inhibiting peptide and substance P, good negative ion signals were observed. Conversely, gastrin I (1‐14), a peptide without a highly basic site, will form positive ions. In addition, spectra obtained in the negative ion mode are usually cleaner due to absence of alkali metal adducts. This can be useful during precursor ion isolation for MS/MS studies. Copyright © 2008 John Wiley & Sons, Ltd.     

Atmospheric pressure chemical ionization of alkanes,alkenes, and cycloalkanes

Normal and cyclic alkanes and alkenes form stable gas-phase ions in air at atmospheric pressure from 40 to 200°C when moisture is below 1 ppm. Ionization of alkanes in a ⁶³Ni source favored charge transfer over proton transfer through pathways involving [M?1]⁺ and [M?3]⁺ ions. Ion mobility spectra for alkanes showed sharp and symmetrical profiles while spectra for alkenes suggested fragmentation. Ion identifications were made by using mass spectrometry, and ionization pathways were supported by using deuterated analogs of alkanes and alkenes. Alkanes were ionized seemingly through a hydrogen abstraction pathway and did not proceed through an alkene intermediate. New methods for interpretation of mobility spectra utilizing ion mobility spectrometry, atmospheric pressure chemical ionization mass spectrometry, chemical ionization mass spectrometry, and ion mobility spectrometry-mass spectrometry data were demonstrated.     

Evaluation of micro- versus nano-electrospray ionization for ambient pressure ion mobility spectrometry

The comparison of nanospray and microspray ionizations for detecting mixtures of compounds by ion mobility spectrometry has been investigated for sensitivity, ion transmission through a drift tube, and ion suppression effects when used as an ionization source for ambient pressure ion mobility spectrometry (IMS). Several articles have demonstrated that nano-electrospray ionization mass spectrometry (n-ESI-MS) has improved sensitivity, provides less background noise, and lower limits of detection than micro-electrospray ionization (μ-ESI) for IMS. Most importantly, data from n-ESI-MS is concentration-sensitive. Our laboratory previously published an article that observed a striking result when μ-ESI-IMS was investigated for a single compound in the positive ion mode. The data reported was mass-sensitive. In this new investigation, we have investigated mixtures, and experiments were designed to evaluate the effect of sensitivity, ion transmission and ion suppressions in μ-ESI-IMS and n-ESI-IMS. At an electrospray flow rate in the μL min⁻¹ range, compounds with higher proton affinities responded best while at the nanospray flow rates of nL min⁻¹, relative responses were more equal. This study observed that a decreased ESI flow rate resulted in a decreased ion signal. These trends demonstrated less sensitivity for ESI-IMS at reduced flow rates but suggest better quantification. At higher flow rates, relative ionization efficiencies were still uniform for all the components studied individually and in mixtures and sensitivity improved by about 78%. Concentration studies showed that at high concentrations, ion detection efficiencies were uniform at about 33% for all compounds studied individually and in mixtures. At low concentrations, the detection efficiency varied from 31% to 86%, depending on the proton affinity of the component in the mixture. Ion transmission through the IMS tube measured with a segmented Faraday detector that was incorporated into the IMS design indicated that most of the ion current for mixtures was transported through the IMS tube with a radius of less than 18 mm for both positive and negative ion modes.     

Use of a hand-portable gas chromatograph-toroidal ion trap mass spectrometer for self-chemical ionization identification of degradation products related to O-ethyl S-(2-diisopropylaminoethyl) methyl phosphonothiolate (VX)

The chemical warfare agent O-ethyl S-(2-diisopropylaminoethyl) methyl phosphonothiolate (VX) and many related degradation products produce poorly diagnostic electron ionization (EI) mass spectra by transmission quadrupole mass spectrometry. Thus, chemical ionization (CI) is often used for these analytes. In this work, pseudomolecular ([M+H]⁺) ion formation from self-chemical ionization (self-CI) was examined for four VX degradation products containing the diisopropylamine functional group. A person-portable toroidal ion trap mass spectrometer with a gas chromatographic inlet was used with EI, and both fixed-duration and feedback-controlled ionization time. With feedback-controlled ionization, ion cooling (reaction) times and ion formation target values were varied. Evidence for protonation of analytes was observed under all conditions, except for the largest analyte, bis(diisopropylaminoethyl)disulfide which yielded [M+H]⁺ ions only with increased fixed ionization or ion cooling times. Analysis of triethylamine-d₁₅ provided evidence that [M+H]⁺ production was likely due to self-CI. Analysis of a degraded VX sample where lengthened ion storage and feedback-controlled ionization time were used resulted in detection of [M+H]⁺ ions for VX and several relevant degradation products. Dimer ions were also observed for two phosphonate compounds detected in this sample.     

Laser ionization of H2S and ion-molecule reactions of H3S+ in laser-based ion mobility spectrometry and drift cell time-of-flight mass spectrometry

The detection of hydrogen sulfide (H₂S) by 2?+?1 resonance-enhanced multi-photon ionization (REMPI) and the application of H₂S as a laser dopant for the detection of polar compounds in laser ion mobility (IM) spectrometry at atmospheric pressure were investigated. Underlying ionization mechanisms were elucidated by additional studies employing a drift cell interfaced to a time-of-flight mass spectrometer. Depending on the pressure, the primary ions H₂S⁺, HS⁺, S⁺, and secondary ions, such as H₃S⁺, were observed. The 2?+?1 REMPI spectrum of H₂S near λ?=?302.5 nm was recorded at atmospheric pressure. Furthermore, the limit of detection and the linear range were established. In the second part of the work, H₂S was investigated as an H₂O analogous laser dopant for the ionization of polar substances by proton transfer. H₂S exhibits a proton affinity (PA) similar to that of H₂O, but a significantly lower ionization energy facilitating laser ionization. Ion-molecule reactions (IMR) of H₃S⁺ with a variety of polar substances with PA between 754.6 and 841.6 kJ/mol were investigated. Representatives of different compound classes, including alcohols, ketones, esters, and nitroaromatics were analyzed. The IM spectra resulting from IMR of H₃S⁺ and H₃O⁺ with these substances are similar in structure, i.e., protonated monomer and dimer ion peaks are found depending on the analyte concentration.     

Atmospheric pressure chemical ionization of explosives induced by soft X‐radiation in ion mobility spectrometry: mass spectrometric investigation of the ionization reactions of drift gasses,dopants and alkyl nitrates

A promising replacement for the radioactive sources commonly encountered in ion mobility spectrometers is a miniaturized, energy‐efficient photoionization source that produce the reactant ions via soft X‐radiation (2.8 keV). In order to successfully apply the photoionization source, it is imperative to know the spectrum of reactant ions and the subsequent ionization reactions leading to the detection of analytes. To that end, an ionization chamber based on the photoionization source that reproduces the ionization processes in the ion mobility spectrometer and facilitates efficient transfer of the product ions into a mass spectrometer was developed. Photoionization of pure gasses and gas mixtures containing air, N₂, CO₂ and N₂O and the dopant CH₂Cl₂ is discussed. The main product ions of photoionization are identified and compared with the spectrum of reactant ions formed by radioactive and corona discharge sources on the basis of literature data. The results suggest that photoionization by soft X‐radiation in the negative mode is more selective than the other sources. In air, adduct ions of O₂^– with H₂O and CO₂ were exclusively detected. Traces of CO₂ impact the formation of adduct ions of O₂^– and Cl^– (upon addition of dopant) and are capable of suppressing them almost completely at high CO₂ concentrations. Additionally, the ionization products of four alkyl nitrates (ethylene glycol dinitrate, nitroglycerin, erythritol tetranitrate and pentaerythritol tetranitrate) formed by atmospheric pressure chemical ionization induced by X‐ray photoionization in different gasses (air, N₂ and N₂O) and dopants (CH₂Cl₂, C₂H₅Br and CH₃I) are investigated. The experimental studies are complemented by density functional theory calculations of the most important adduct ions of the alkyl nitrates (M) used for their spectrometric identification. In addition to the adduct ions [M + NO₃]^– and [M + Cl]^–, adduct ions such as [M + N₂O₂]^–, [M + Br]^– and [M + I]^– were detected, and their gas‐phase structures and energetics are investigated by density functional theory calculations. Copyright © 2016 John Wiley & Sons, Ltd.     

Role of ion-ion recombination for alkali chloride cluster formation in liquid secondary ion mass spectrometry

Liquid secondary ionization mass spectra of solutions of alkali chlorides in glycerol were studied as a function of salt concentration. The experimental abundances of glycerol ions and of Cs⁺(CsCl) _n cluster ions were successfully reproduced by assuming that most of the randomly distributed ions pair up with counterions shortly after impact. Further, it is considered that clustering (or proton transfer) reactions occur mainly between an ion that survives the pairing process and ion pairs (or basic analytes) in the immediate vicinity; however, some mixing undoubtedly occurs in the later stages of the desorption process. At the density of the original matrix, the range of proton transfer is calculated to be 5–15 Å, and that of clustering approximately 25% shorter. These reaction distances are inversely correlated with the internal energy of the ejected ions. In general, liquid secondary ionization mass spectra of alkali chloride solutions can be seen to result from competitive ion-ion recombination reactions in the decaying matrix. Finally, from the abundances of cluster ions containing [glycerol - H]^? ions, it is estimated that approximately 1% of the glycerol molecules in the ejected volume are ionized in the collision cascade.     

Paper spray ionization with ion mobility spectrometry at ambient pressure

A paper spray ion source was combined with a drift tube operating at ambient pressure for mobility measurements of ions derived from pharmaceutical solutions. Paper spray ionization with solvent alone resulted in a mixture of ions convolved to a single peak with a reduced mobility of 2.19 cm²/Vs in the mobility spectrum. These were mass-identified principally as m/z 157, (MeOH)₂(HCOOH)₂H⁺ and m/z 129, (MeOH)₄(H₂O)H⁺ while pharmaceuticals with nitrogen bases formed MH⁺ product ions. The duration of response was governed by the volume of liquid added to the paper source and was limited by evaporation of solvent in gas at 58 °C venting the drift tube. Quantitative variation was attributed in part to morphologic changes in the tip of the paper spray source. This was associated with mass flow in the electrical discharge and not due alone to cycles of wetting and drying of the paper. Mobility spectra of chlorpromazine in urine, exhibited a single product ion peak and linear response was 30 to 500 ng with an estimated limit of detection of 1.5 ng. Ion flux could be prolonged by continuous addition of liquid and findings portend a combination of paper spray ionization IMS with paper chromatography.     

Sterically hindered phenols in negative ion mobility spectrometry–mass spectrometry

Negative corona discharge atmospheric pressure chemical ionization (APCI) was used to investigate phenols with varying numbers of tert‐butyl groups using ion mobility spectrometry–mass spectrometry (IMS‐MS). The main characteristic ion observed for all the phenolic compounds was the deprotonated molecule [M–H]⁻. 2‐tert‐Butylphenol showed one main mobility peak in the mass‐selected mobility spectrum of the [M–H]⁻ ion measured under nitrogen atmosphere. When air was used as a nebulizer gas an oxygen addition ion was seen in the mass spectrum and, interestingly, this new species [M–H+O]⁻ had a shorter drift time than the lighter [M–H]⁻ ion. Other phenolic compounds primarily produced two IMS peaks in the mass‐selected mobility spectra measured using the [M–H]⁻ ion. It was also observed that two isomeric compounds, 2,4‐di‐tert‐butylphenol and 2,6‐di‐tert‐butylphenol, could be separated with IMS. In addition, mobilities of various characteristic ions of 2,4,6‐trinitrotoluene were measured, since this compound was previously used as a mobility standard. The possibility of using phenolic compounds as mobility standards is also discussed. Copyright © 2009 John Wiley & Sons, Ltd.     

Development of a new electron ionization/field ionization ion source for gas chromatography/time‐of‐flight mass spectrometry

We have developed a combined EI/FI source for gas chromatography/orthogonal acceleration time‐of‐flight mass spectrometry (GC/oaTOFMS). In general, EI (electron ionization) and FI (field ionization) mass spectra are complementary: the EI mass spectrum contains information about fragment ions, while the FI mass spectrum contains information about molecular ions. Thus, the comparative study of EI and FI mass spectra is useful for GC/MS analyses. Unlike the conventional ion sources for FI and EI measurements, the newly developed source can be used for both measurements without breaking the ion source vacuum or changing the ion source. Therefore, the combined EI/FI source is more preferable than the conventional EI or FI ion source from the viewpoint of the reliability of measurements and facility of operation. Using the combined EI/FI source, the complementarity between EI and FI mass spectra is demonstrated experimentally with n‐hexadecane (100 pg): characteristic fragment ions for the n‐alkane such as m/z 43, 57, 71, and 85 are obtained in the EI mass spectrum, while only the parent peak of m/z 226 (M⁺) without any fragment ions is observed in the FI mass spectrum. Moreover, the field desorption (FD) measurement is also demonstrated with poly(ethylene glycol)s M600 (10 ng) and M1000 (15 ng). Signals of [M+H]⁺, [M+Na]⁺ and [M+K]⁺ are clearly detected in the FD mass spectra. Copyright © 2009 John Wiley & Sons, Ltd.     

Atmospheric pressure ionization–tandem mass spectrometry of the phenicol drug family

In this work, the mass spectrometry behaviour of the veterinary drug family of phenicols, including chloramphenicol (CAP) and its related compounds thiamphenicol (TAP), florfenicol (FF) and FF amine (FFA), was studied. Several atmospheric pressure ionization sources, electrospray (ESI), atmospheric pressure chemical ionization and atmospheric pressure photoionization were compared. In all atmospheric pressure ionization sources, CAP, TAP and FF were ionized in both positive and negative modes; while for the metabolite FFA, only positive ionization was possible. In general, in positive mode, [M + H]⁺ dominated the mass spectrum for FFA, while the other compounds, CAP, TAP and FF, with lower proton affinity showed intense adducts with species present in the mobile phase. In negative mode, ESI and atmospheric pressure photoionization showed the deprotonated molecule [M–H]^?, while atmospheric pressure chemical ionization provided the radical molecular ion by electron capture. All these ions were characterized by tandem mass spectrometry using the combined information obtained by multistage mass spectrometry and high‐resolution mass spectrometry in a quadrupole‐Orbitrap instrument. In general, the fragmentation occurred via cyclization and losses or fragmentation of the N‐(alkyl)acetamide group, and common fragmentation pathways were established for this family of compounds. A new chemical structure for the product ion at m/z 257 for CAP, on the basis of the MS³ and MS⁴ spectra is proposed. Thermally assisted ESI and selected reaction monitoring are proposed for the determination of these compounds by ultra high‐performance liquid chromatography coupled to tandem mass spectrometry, achieving instrumental detection limits down to 0.1 pg. Copyright © 2013 John Wiley & Sons, Ltd.     

A small high‐irradiance laser ionization time‐of‐flight mass spectrometer

A small high‐irradiance laser ionization time‐of‐flight mass spectrometer (LI‐TOFMS) with orthogonal sample introduction was described. High irradiance of 6 × 10¹⁰ W/cm² at 532 nm from a Nd : YAG laser was applied in the experiment to get a high ionization degree in plasma and to dissociate the interferential polyatomic ions. Meanwhile, the interferential multiply charged ions resulted by high‐irradiance were nearly eliminated in the spectrum by utilizing helium as the buffer gas in the ion source due to three‐body recombination, which resulted in a relatively clean background. Improved signal stability was obtained by automated step moving of the sample stage in short time intervals. By using two sets of Einzel lens in transport system, nearly uniform relative sensitivity coefficients (RSCs) were achieved for most of metal elements including light ions which were detected in extremely low sensitivity in previous hexapole transportation instrument. The resolving power reaches 2200, and the detection limits (DLs) are 10^?6 g/g for metal elements in the steel standard. Copyright © 2009 John Wiley & Sons, Ltd.     

Mass spectral fragmentation patterns of heterocycles. IV . Tetracyclic phenothiazines. IX. Electron impact promoted mass spectral fragmentation of pyrrolo[3,2,1-kl]phenothiazine

The mass spectral fragmentation patterns of pyrrolo[3, 2, 1-kl]phenothiazine ( 1 ) and its 1, 10-dideuterioderi-vative [2] are reported. The site of deuterium substitution in 2 was established by examination of its ¹³C nuclear magnetic resonance spectrum. The heteroaromatic stability of 1 to electron impact is exemplified by the occurrence of the molecular ion as the base peak and the formation of a reasonably intense M²⁺ ion. An intense M-1 ion is also observed. The more abundant fragment ions appear to result from sulfur ionization. Fragment ions arising from ionization of the nitrogen constitute only a small fraction of the total ion current. Proposed fragmentation pathways of 1 are supported by the detection of appropriate metastable ions, exact mass measurements, and electron impact spectrum of 2 .     

Metabolic profiling of Escherichia coli by ion mobility-mass spectrometry with MALDI ion source

Comprehensive metabolome analysis using mass spectrometry (MS) often results in a complex mass spectrum and difficult data analysis resulting from the signals of numerous small molecules in the metabolome. In addition, MS alone has difficulty measuring isobars and chiral, conformational and structural isomers. When a matrix-assisted laser desorption ionization (MALDI) source is added, the difficulty and complexity are further increased. Signal interference between analyte signals and matrix ion signals produced by MALDI in the low mass region (<1500 Da) cause detection and/or identification of metabolites difficult by MS alone. However, ion mobility spectrometry (IMS) coupled with MS (IM-MS) provides a rapid analytical tool for measuring subtle structural differences in chemicals. IMS separates gas-phase ions based on their size-to-charge ratio. This study, for the first time, reports the application of MALDI to the measurement of small molecules in a biological matrix by ion mobility-time of flight mass spectrometry (IM-TOFMS) and demonstrates the advantage of ion-signal dispersion in the second dimension. Qualitative comparisons between metabolic profiling of the Escherichia coli metabolome by MALDI-TOFMS, MALDI-IM-TOFMS and electrospray ionization (ESI)-IM-TOFMS are reported. Results demonstrate that mobility separation prior to mass analysis increases peak-capacity through added dimensionality in measurement. Mobility separation also allows detection of metabolites in the matrix-ion dominated low-mass range (m/z < 1500 Da) by separating matrix signals from non-matrix signals in mobility space.     

Effects of solvent flow,dopant flow,and lamp current on dopant-assisted atmospheric pressure photoionization (DA-APPI) for LC-MS. Ionizationvia proton transfer

In this paper, the effects of solvent flow, dopant flow, and lamp power on proton transfer ionization in dopant-assisted (DA) atmospheric pressure photoionization (APPI) are investigated. A broad theoretical framework is presented, describing the primary photoionization process, the formation of protonated-solvent cluster ions, and the balance between analyte ion creation via proton transfer and loss via recombination. The principal experimental test system utilized methanol as the solvent, toluene as the dopant, and acridine as the analyte. Comparisons are made between acridine and a less basic compound, 9-methylanthracene (9-MA). Experimental determinations of the trends in the analyte MH⁺ signal and the total ion current (TIC) with variations in the subject parameters are provided. Experimental results and theory demonstrate that both the analyte signal and the TIC approach asymptotic limits with increases in dopant flow and/or lamp current (two factors which dictate the rate of photoion generation). The data show that these limits are lowered at higher solvent flow rates. These results are attributed to the recombination loss process, the rate of which increases with the second power of ion concentration. We deduce that the recombination rate constant increases with solvent flow rate, a consequence of the growth of ion-solvent clusters. Cluster growth is also believed to be a factor in the dramatic loss of sensitivity for 9-MA that occurs as the solvent flow is raised, because larger protonated-solvent cluster ions have greater solvation energies and may be unreactive with compounds having low gas-phase basicity and/or low solvation energy.