Intramolecular hydrogen bonding effect on metal ion complexation of homooxacalix[4]arene bearing tetraamides

N,N-Dipentylamido homooxacalix[4]arene (3) in the C-1,2-alternate conformation provided Pb²⁺ ion selectivity over other metal cations. N-Monopentylamido homooxacalix[4]arene in C-1,2-alternate conformation has an intramolecular hydrogen bonding, causing decrease of the metal ion complex ability.     

Heteroditopic receptors tris(2-pyridylamide) derivatives derived from hexahomotrioxacalix[3]arene triacetic acid

The lower rim functionalized cone-hexahomotrioxacalix[3]arene tris(2-pyridylamide) derivatives cone- 3 and cone-7 having the hydrogen bonding groups and 2-pyridyl groups were synthesized from triol 1 by a stepwise reaction. Extraction data for alkali metal ions, transition metal ions, and alkyl ammonium ions from water into dichloromethane are discussed. Due to the strong intramolecular hydrogen bonding between the neighboring NH and CO groups, their affinities to metal cations were weakened. The complexation modes of cone-3 and cone -7 with n-BuNH₃Cl and AgSO₃CF₃ were also demonstrated by ¹H NMR titration in CDCl₃. Tris(2-pyridylamide) derivatives cone-3 and cone-7 can complex with n-butyl ammonium ion and silver cation at the same time to form the heteroditopic complexation.     

Chiral heterocyclic ligands. XVI: Synthesis and crystal structures of four metal complexes of a tridentate,biheterocyclic ligand derived from l-cysteine

The readily available homochiral ligand (1) was used to prepare four mononuclear nickel and cobalt complexes with a 2:1 ligand:metal ratio. X-ray crystal structures of these revealed that in all cases the N,N,O-tridentate ligand adopts facial coordination to the metal with the pyridine rings trans-disposed and the carboxylate and amine groups cis. The individual crystal structures of these compounds differ significantly in the way the complexes pack, which is mediated by hydrogen bonding involving the cations, anions and water molecules as well as, in one case, π-stacking.     

Polyfunctional isocytosine derivatives: II. Regioselectivity of methylation of 2-(2-hydroxyethylamino)-6-methylpyrimidin-4(3H)-one in different media

High regioselectivity in the methylation of 2-(2-hydroxyethylamino)-6-methylpyrimidin-4-(3H)-one at the N³ atom in water and ethanol in the presence of inorganic bases is determined by participation of the oxygen atom in hydrogen bonding and its coordination to metal cation, respectively. In going to aprotic dimethylformamide which is capable of solvating cations, the regioselectivity decreases, and a mixture of N ³-and O-methyl isomers is formed.     

Coordination and hydrogen‐bonding assemblies in hybrid reaction products between 5,10,15,20‐tetra‐4‐pyridylporphyrin and dysprosium trinitrate hexahydrate

Reactions of the title free‐base porphyrin compound (TPyP) with dysprosium trinitrate hexahydrate in different crystallization environments yielded two solid products, viz. [μ‐5,15‐bis(pyridin‐1‐ium‐4‐yl)‐10,20‐di‐4‐pyridylporphyrin]bis[aquatetranitratodysprosium(III)] benzene solvate, [Dy₂(NO₃)₈(C₄₀H₂₈N₈)(H₂O)₂]·C₆H₆, (I), and 5,10,15,20‐tetrakis(pyridin‐1‐ium‐4‐yl)porphyrin pentaaquadinitratodysprosate(III) pentanitrate diethanol solvate dihydrate, (C₄₀H₃₀N₈)[Dy(NO₃)₂(H₂O)₅](NO₃)₅·2C₂H₆O·2H₂O, (II). Compound (I) represents a 2:1 metal–porphyrin coordinated complex, which lies across a centre of inversion. Two trans‐related pyridyl groups are involved in Dy coordination. The two other pyridyl substituents are protonated and involved in intermolecular hydrogen bonding along with the metal‐coordinated water and nitrate ligands. Compound (II) represents an extended hydrogen‐bonded assembly between the tetrakis(pyridin‐1‐ium‐4‐yl)porphyrin tetracation, the [Dy(NO₃)₂(H₂O)₅]⁺ cation and the free nitrate ions, as well as the ethanol and water solvent molecules. This report provides the first structural characterization of the exocyclic dysprosium complex with tetrapyridylporphyrin. It also demonstrates that charge balance can be readily achieved by protonation of the peripheral pyridyl functions, which then enhances their capacity in hydrogen bonding as H‐atom donors rather than H‐atom acceptors.     

Off‐atomic site charges in some anions,metal cations,and complexes: Significance for electrostatic properties and binding

Electronic structures and properties of several anions, metal cations, and their complexes with neutral molecules were investigated at the HF/6‐31G** and B3LYP/6‐31G** levels of theory. Charges shifted from atomic sites due to atomic orbital hybridization called hybridization displacement charges (HDC) were investigated in detail. It has been found that many components of HDC are associated with each atom of ion that are shifted from the atomic sites, those associated with metal cations being shifted by large distances as found previously in electrically neutral systems. It is shown that atomic orbitals are appreciably rehybridized in going from neutral molecules to anions and cations. Molecular dipole moments and surface molecular electrostatic potentials (MEP) are obtained satisfactorily using HDC for the various types of species mentioned above. In the OH^?? H₂O complex, reversal of direction of shift of an HDC component associated with the hydrogen atom of H₂O involved in hydrogen bonding, indicates that the hydrogen bond between OH^? and H₂O would have some covalent character. Other atomic site‐based point charge models cannot provide such information about the nature of bonding. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem 2007     

A 16‐connected three‐dimensional hydrogen‐bonding network in tetrakis(4‐aminopyridinium) perylene‐3,4,9,10‐tetracarboxylate octahydrate

The novel title organic salt, 4C₅H₇N₂⁺·C₂₄H₈O₈⁴⁻·8H₂O, was obtained from the reaction of perylene‐3,4,9,10‐tetracarboxylic acid (H₄ptca) with 4‐aminopyridine (4‐ap). The asymmetric unit contains half a perylene‐3,4,9,10‐tetracarboxylate (ptca⁴⁻) anion with twofold symmetry, two 4‐aminopyridinium (4‐Hap⁺) cations and four water molecules. Strong N—H...O hydrogen bonds connect each ptca⁴⁻ anion with four 4‐Hap⁺ cations to form a one‐dimensional linear chain along the [010] direction, decorated by additional 4‐Hap⁺ cations attached by weak N—H...O hydrogen bonds to the ptca⁴⁻ anions. Intermolecular O—H...O interactions of water molecules with ptca⁴⁻ and 4‐Hap⁺ ions complete the three‐dimensional hydrogen‐bonding network. From the viewpoint of topology, each ptca⁴⁻ anion acts as a 16‐connected node by hydrogen bonding to six 4‐Hap⁺ cations and ten water molecules to yield a highly connected hydrogen‐bonding framework. π–π interactions between 4‐Hap⁺ cations, and between 4‐Hap⁺ cations and ptca⁴⁻ anions, further stabilize the three‐dimensional hydrogen‐bonding network.     

Hydrogen Bonding and Solvent Effects on Complexation of Alkali Metal Cations by Lower Rim Calix[4]arene Tetra(O-[N-acetyl-D-phenylglycine methyl ester]) Derivative

Complexation of alkali metal cations with 5,11,17,23-tetra-tert-butyl-26,28,25,27-tetrakis(O-methyl-D-α-phenylglycylcarbonylmethoxy)calix[4]arene (L) was studied by means of spectrophotometric, conductometric and potentiometric titrations at 25 °C. The solvent effect on the binding ability of L was examined by using two solvents with different affinities for hydrogen bonding, viz. methanol and acetonitrile. Despite the presence of intramolecular NH···O=C hydrogen bonds in L, which need to be disrupted to allow metal ion binding, this calix[4]arene amino acid derivative was shown to be an efficient binder for smaller Li⁺ and Na⁺ cations in acetonitrile (lg K _LiL  > 5, lg K _NaL  = 7.66), moderately efficient for K⁺ (lg K _KL  = 4.62), whereas larger Rb⁺ and Cs⁺ did not fit in its hydrophilic cavity. The complex stabilities in methanol were significantly lower (lg K _NaL  =  4.45, lg K _KL  = 2.48). That could be explained by different solvation of the cations and by competition between the cations and methanol molecules (via hydrogen bonds) for amide carbonyl oxygens. The influence of cation solvation on complex stability was most pronounced in the case of Li⁺ for which, contrary to the quite stable LiL ⁺ complex in acetonitrile, no complexation was observed in methanol under the conditions used.     

十甲基五元瓜环与几种金属离子配合物的晶体结构

合成了3个十甲基五元瓜环(Me₁₀Q[5])分别与铷离子、铈离子水合物相互作用形成的配合物以及四氯锌根离子存在下形成的单晶体,并测定了其单晶结构。3个配合物均形成以Me₁₀Q[5]为“胶囊体”,水分子为“胶囊”芯材,金属离子或水分子为“胶囊盖”的“分子胶囊”结构,并通过配键或氢键组装形成一维超分子链结构实体。     

Tetraaquabis(pyridine)metal(II) saccharinate tetrahydrate, [M(H2O)4(py)2](sac)2·4H2O; M = Co,Ni. Crystal structure determination

The crystal structure determination of the title compounds showed that they are isomorphous, revealing the general formula [M(H₂O)₄(py)₂](sac)₂·4H₂O. Their structures are built up of [M(H₂O)₄(py)₂]²⁺ cations, saccharinato anions and non-coordinated water molecules. The metal atom lies on the inversion center and is octahedrally coordinated by four water oxygens and two pyridine nitrogen atoms. The crystal structure packing is achieved through the hydrogen bonds of O_w⋯O_w, O_w⋯O and O_w⋯N type. Coordinated water molecules are hydrogen bonded to non-coordinated ones at the same time participating in hydrogen bonding with carbonyl oxygen and nitrogen atom from the saccharinato anions. Non-coordinated water molecules participate in hydrogen bonding with the oxygen atoms belonging to the saccharinato CO and SO₂ groups. The hydrogen bond network between the oxygen atoms belonging to the SO₂ group of the saccharinato anions and one of the non-coordinated water molecules (OW3) constructs the centrosymmetric cavity in the structure.     

Anion dependent molecular recognition of cations

In DMF-d₇ tetrabenzimidazole cavitands 2 exist as monomeric species and vase-like conformers. Several possible arrangements of the four benzimidazole NHs are indicated by ¹H NMR spectroscopy. The cavitands form 1:1 inclusion complexes with tetraethyl ammonium and phosphonium cations only when strong hydrogen bonding anions like chloride or acetate are present. These complexes are stable on the NMR time scale at 295 K feature a C_2V-symmetrical arrangement of benzimidazole functions. The stability of the C_2V-symmetrical tetramethylammonium acetate complex is independent of the temperature. In contrast, tetramethylammonium and phosphonium chloride complexes exist at 233 K as several isomers. This complicated behavior is, in part, attributed to the hydrogen bonding interactions between the anions and the NH groups of benzimidazole functions.     

Self-diffusion of water and alkaline cations in bisulfur-containing aromatic polyamides-water systems

Aromatic copolyamides based on diamino sulfoacids, unsubstituted aromatic diamines, and phthalyl dichlorides were synthesized. Self-diffusion of water and alkaline cations in aqueous Li⁺, Na⁺, and Cs⁺ salts of the iso-polymer (μPA) and Li⁺ salt of the tere-polymer (πPA) of aromatic bisulfur-containing polyamides was studied by NMR with a magnetic field pulse gradient. A supramolecular structure was formed by hydrogen bonding between the carbonyl and N-H groups of adjacent macromolecules with two water molecules included in them as structure-forming bridges. The oversorbed water was incorporated in the ionogen channels formed by the sulfo groups, counterions, and water molecules. The conclusion was drawn that the structure of ionogen channels was more regular in πPA than μPA. The self-diffusion coefficients of metal cations increase in the series Li < Na < Cs.     

Alkyl Ammonium Ion Selectivity of Hexahomotrioxacalix[3]arene Triamide Derivative having the Intramolecular Hydrogen-Bonding Group

The lower rim functionalized hexahomotrioxacalix[3]arene triamide 4 with cone-conformation was synthesized from triol 1 by a stepwise reaction. The different extractability for alkali metal ions, transition metal ions, and alkyl ammonium ions from water into dichloromethane is discussed. Due to the strong intramolecular hydrogen bonding between the neighboring NH and CO groups in triamide 4, its affinity to metal cations was weakened. Triamide 4 shows a single selectivity to n-BuNH ₃ ⁺ . The anion complexation of triamide 4 was also studied by ¹H NMR titration experiments. Triamide 4 binds halides through the intermolecular hydrogen bonding among the NH hydrogens of amide in a 1:1 fashion in CDCl₃. The association constants calculated from these changes in chemical shifts of the amide protons are K _a = 223 M^?1 for Cl^? and K _a = 71.7 M^?1 for Br^?. Triamide 4 shows a preference for Cl^? complexation than Br^? complexation.     

Tris(1‐ethyl‐3‐methyl­imidazolium) hexa­chloro­lanthanate

In the title complex, (C₆H₁₁N₂)₃[LaCl₆], centrosymmetric octahedral hexa­chloro­lanthanate anions are located at the corners and face‐centers of the monoclinic unit cell. The ring H atoms of the cations interact with the Cl atoms of the anions via hydrogen bonding, and bifurcation of the hydrogen bonding is observed. Cation–cation interactions via hydrogen bonding between the ring H atoms and π‐electrons of aromatic rings are also observed as in other imidazolium salts.     

Theoretical insights into the formation, structure, and electronic properties of anticancer oxaliplatin drug and cucurbit[n]urils n = 5 to 8

Geometries, formation and electronic properties of cucurbit[n]uril-oxaliplatin n = 5–8, host-guest complexes are investigated with DFT calculations. The formation of inclusion complexes of CB[n]-oxaliplatin are facile in CB[n] n = 6–8. In the complex, the cyclohexyl group is found to be deep inside the cavity, with the formation of a hydrogen bonding between the portal oxygen atoms and the amine nitrogen of the oxaliplatin guest. NBO analysis shows the transfer of charge from the metal center to the CB[7] unit and the existence of hydrogen bonding between the oxygen portal and amine nitrogen. The HOMO orbital is localized on the carboxylate group and the LUMO orbital are localized on the cucurbituril unit in CB[7]-oxaliplatin complex. The strength of the interaction determined here reflects the ability of CB[n] to act as a host for suitably oxaliplatin guests, even in aqueous solution.     

Effect of Alkali Metal Cations on Length and Strength of Hydrogen Bonds in DNA Base Pairs

For many years, non-covalently bonded complexes of nucleobases have attracted considerable interest. However, there is a lack of information about the nature of hydrogen bonding between nucleobases when the bonding is affected by metal coordination to one of the nucleobases, and how the individual hydrogen bonds and aromaticity of nucleobases respond to the presence of the metal cation. Here we report a DFT computational study of nucleobase pairs interacting with alkali metal cations. The metal cations contribute to the stabilization of the base pairs to varying degrees depending on their position. The energy decomposition analysis revealed that the nature of bonding between nucleobases does not change much upon metal coordination. The effect of the cations on individual hydrogen bonds were described by changes in VDD charges on frontier atoms, H-bond length, bond energy from NBO analysis, and the delocalization index from QTAIM calculations. The aromaticity changes were determined by a HOMA index.     

Using steric hindrance to manipulate and stabilize metal halide perovskites for optoelectronics

The chemical instability of metal halide perovskite materials can be ascribed to their unique properties of softness, in which the chemical bonding between metal halide octahedral frameworks and cations is the weak ionic and hydrogen bonding as in most perovskite structures. Therefore, various strategies have been developed to stabilize the cations and metal halide frameworks, which include incorporating additives, developing two-dimensional perovskites and perovskite nanocrystals, etc. Recently, the important role of utilizing steric hindrance for stabilizing and passivating perovskites has been demonstrated. In this perspective, we summarize the applications of steric hindrance in manipulating and stabilizing perovskites. We will also discuss how steric hindrance influences the fundamental kinetics of perovskite crystallization and film formation processes. The similarities and differences of the steric hindrance between perovskite solar cells and perovskite light emission diodes are also discussed. In all, utilizing steric hindrance is a promising strategy to manipulate and stabilize metal halide perovskites for optoelectronics.

Manipulation on steric hindrance can influence the fundamental kinetics of perovskite crystallization and film formation, therefore stabilizing and passivating perovskite structures, and promoting the commercialization of stable perovskite devices.     

Hydrogen bond effects on zero field splitting of some 1,4-diazaaromatics with strongly basic lowest triplet states

In polynuclear 1,4-diazines: quinoxaline, 1,4-diazaphenanthrene and 1,4-diazatriphenylene excited to the lowest ³(π, π*) states two effects have been observed and interpreted: (i) D-parameters of the free bases are lower than those of the parent hydrocarbons which seems to be caused by “proximity effects” of the nearby ³(n, π*) states; (ii) in hydrogen bonding solvents D-parameters decrease, just reverse to expectation. The lowest values of D are observed in monovalent cations. The interpretation assumes a non-planar structure of the hydrogen bonded complex.     

Proton Controlled Supramolecular Assembly: A Comparative Structural Study of Bis(2-guanidinobenzimidazolo)nickel(II) with Bis(2-guanidinobenzimidazole)nickel(II) Nitrate and 2-guanidinobenzimidazole

Abstract

Previously studies have shown that when 2-guanidinobenzimidazole complexes with a number of transition metal ions it tautomerises so that, in contrast to the free ligand structure, no intermolecular hydrogen bonding between bound ligands occurs. In the present study it is demonstrated that ligand deprotonation to yield bis(2-guanidinobenzimidazolo)nickel(II) restores much of the original hydrogen bonding capability of the uncomplexed ligand. The structure of this neutral complex is compared to the previously reported structure of its diprotonated derivative, bis(2-guanidinobenzimidazole)nickel(II) nitrate, as well as to the structure of the uncomplexed ligand. In contrast to the dicationic species, the neutral complex exists in two enantiomeric forms that assemble to form an extended supramolecular lattice, containing channels through its structure. The walls of the channels are made up of ‘strings’ of complex molecules and are held in position by hydrogen bonding between the bound ligands and dimethyl sulfoxide (solvent) molecules as well as water molecules. Some of the solvent molecules lie within the channels and some outside. The hydrogen bonding motif responsible for chain formation differs from that found in the free ligand structure.     

FTIR study on molecular structure of poly(N-isopropylacrylamide) in mixed solvent of methanol and water

The intrachain and interchain hydrogen bonding of poly(N-isopropylacrylamide) (PNIPA) and intermolecular hydrogen bonding between PNIPA chains and the solvent molecules in the mixed solvent of methanol and water have been quantitatively investigated by using Fourier transform infrared (FTIR) spectroscopy at 25 °C. In this spectroscopic system with curve fitting program, we found that in the C-H stretching region, both the N-isopropyl group and the backbone underwent conformational change upon the solvent composition. An analysis of the amide I band suggested that the amide groups of PNIPA were mainly involved in intermolecular hydrogen bonding with water molecules, and the polymer chains were flexible and disordered in the mixed solvent when the methanol volume fraction (χ_v) was lower than 15%. While χ_v was in the range of 15-65%, about 30% of these intermolecular hydrogen bonding between the polymer and water were replaced by intrachain and interchain hydrogen bonding, consequently, PNIPA shrinked as aggregates. If χ_v was above 65%, the interchain hydrogen bonding became predominant due to the solubility characteristics of amphiphilic methanol, and the PNIPA system was homogeneous solution again. We believe that the reentrant transition is related to the weaker interaction between PNIPA molecules and methanol-water complexes, (H₂O)_m(CH₃OH)_n (m/n = 5/1, 5/2, 5/3, 5/4, 5/5) as compared to that between PNIPA and free water or free methanol.