CIEF separation,UV detection,and quantification of ampholytic antibiotics and bacteria from different matrices

The effect of antibiotics on the microbial cells and concentration of antibiotics in the human body is essential for the effective use of antimicrobial therapy. The capillary isoelectric focusing is a suitable technique for the separation and the detection of bacteria, and amphoteric substances from nature. However, the determination of isoelectric points of ampholytic antibiotics by conventional techniques is time consuming. For this reason, capillary isoelectric focusing seems to be appropriate as a simple and reliable way for establishing them. The separation conditions for the capillary isoelectric focusing of selected ampholytic antibiotics with known isoelectric points and pK _as, ampicillin (pI 4.9), ciprofloxacin (pI 7.4), ofloxacin (pI 7.1), tetracycline (pI 5.4), tigecycline (pI 9.7), and vancomycin (pI 8.1), were found and optimized in the suitable pH ranges pH 2.0–5.3, 2.0–9.6, and 9.0–10.4. The established values of isoelectric points correspond with those found in the literature except tigecycline. Its pI was not found in the literature. As an example of a possible procedure for direct detection of both ampholytic antibiotics and bacteria, Staphylococcus epidermidis, in the presence of culture media or whole human blood, was found. The changes of the bacterial cells after their treatment with tetracycline were confirmed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Capillary isoelectric focusing allows the fast and simple determination of isoelectric points of relevant antibiotics, their quantification from the environment, as well as studying their effectiveness on microorganisms in biological samples. Graphical Abstract

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Sticking and desorption of hydrogen on graphite: a comparative study of different models

We study the physisorption of atomic hydrogen on graphitic surfaces with four different quantum mechanical methods: perturbation and effective Hamiltonian theories, close coupling wavepacket, and reduced density matrix propagation methods. Corrugation is included in the modeling of the surface. Sticking is a fast process which is well described by all methods. Sticking probabilities are of the order of a few percent in the collision energy range 0-25 meV, but are enhanced for collision energies close to those of diffraction resonances. Sticking also increases with surface temperature. Desorption is a slow process which involves multiphonon processes. We show, however, how to correct the close coupling wavepacket method to account for such phenomena and obtain correct time constants for initial state decay. Desorption time constants are in the range of 20-50 ps for a surface temperature of 300 K.     

Trans-, cis-, and dihydro-resveratrol: a comparative study

Because of the shifted focus in life science research from genome analyses to genetic and protein function analyses, we now know functions of numerous proteins. These analyses, including those of newly identified proteins, are expected to contribute to the identification of proteins of therapeutic value in various diseases. Consequently, pharmacoproteomic-based drug discovery and development of protein therapies attracted a great deal of attention in recent years. Clinical applications of most of these proteins are, however, limited because of their unexpectedly low therapeutic effects, resulting from the proteolytic degradation in vivo followed by rapid removal from the circulatory system. Therefore, frequent administration of excessively high dose of a protein is required to observe its therapeutic effect in vivo. This often results in impaired homeostasis in vivo and leads to severe adverse effects. To overcome these problems, we have devised a method for chemical modification of proteins with polyethylene glycol (PEGylation) and other water-soluble polymers. In addition, we have established a method for creating functional mutant proteins (muteins) with desired properties, and developed a site-specific polymer-conjugation method to further improve their therapeutic potency. In this review, we are introducing our original protein-drug innovation system mentioned above.     

Green synthesis of banana flavor using different catalysts: a comparative study of different methods

ABSTRACT

Esterification of isoamyl alcohol with acetic acid was studied using different ion-exchange resins, namely Amberlyst 15 dry, Amberlyst 16 wet, Amberlite 120-IR. Esterification was carried out using different esterification methods that are quite new (ohmic, ultrasonic probe, and ultrasonic bath) and the results were compared with microwave-assisted esterification (MAE). The highest isoamyl acetate yield (99%) was obtained by MAE, using a mixture of acetic acid and isoamyl alcohol (mole ratio of 1:2) after 2?h of reaction time. In this process, 2% Amberlyst 15 dry was used. MAE had the least specific energy consumption (0.42?kWh/g isoamyl acetate) and specific CO₂ emission (34?g/g isoamyl acetate). According to the images obtained by scanning electron microscopy, lower amounts of Amberlyst 15 dry beads were destroyed by MAE method compared to other esterification methods. In conclusion, MAE proved to be an economic and environmentally-friendly method for esterification of different flavoring compounds.     

Energetic potential of pyrolyzed biomass from different sources: a comparative study

Journal of Thermal Analysis and Calorimetry - The use of biomass has been a recent trend as a potential feedstock for char generation with improved energetic value. In this work, agricultural...     

Experimental urinary tract infection in rabbits by a group D Streptococcus sp.: A study of serum immunoglobulin classes by enzyme-linked immunosorbent assay

After induction of pyelonephritis and cystitis in rabbits by a group D streptococcus, the authors measured the specific serum antibody response in the three major immunoglobulin classes. The enzyme-linked immunosorbent assay was performed using group D streptococcal antigen extracted by phenol. Before experimentation, all rabbits had low IgM, IgG and IgA titres against group D streptococcal antigen. A marked increase in IgM antibodies was detected during the first month of experimental pyelonephritis. A poor IgM antibody response was observed in rabbits with cystitis. During the three months of experimentation, a significant difference in mean IgG levels was observed between rabbits with pyelonephritis and those with cystitis.     

Antibacterial activity of an aqueous extract of Petroselinum crispum leaves against pathogenic bacteria isolated from patients with burns infections in Al-najaf Governorate, Iraq

The purpose of this study was to investigate, by use of the agar well diffusion method, the ability of cold-water and hot-water extracts of Petroselinum crispum leaves to inhibit bacteria isolated from patients with burns infections. The results revealed that 250 mg/ml of the hot-water extract was the more effective inhibitor of the growth of P. aeruginosa. The inhibition zone diameter of 29.667 mm was significantly different (P < 0.05) from that for nitrofurantoin, chosen as positive control. From the overall results obtained it is evident that the plant screened has anti-bacterial activity against some bacteria associated with burns infections.     

High-throughput powder X-ray diffraction, IR-spectroscopy and ion chromatography analysis of urinary stones: A comparative study

The instrumental qualitative analysis of urinary stones is a critical step in clinical practice and urological research. A powder X-ray diffraction, IR-spectroscopy and ion chromatography have been applied for the qualitative analysis of 20 urinary stones. Suggestions for a sample preparation and an optimal measurement strategy were formulated. The main difficulties for the powder X-ray diffraction qualitative analysis are a limiting amount of the sample and a preferential orientation of crystals, both issues should be minimized by the special sample preparation. Urinary stones samples have been clustered into four groups using different sets of numerical input data (cation and anion content, phase composition). At the same time a high-throughput multivariate clustering has been applied for powder X-ray diffraction and IR-spectroscopy data. The multivariate whole-profile approach can be used as a tool for a high-throughput time reducing technique for clinical practice, when a quick and stable classification of samples is required. All three sets of the data can be automatically separated into three clusters: oxalate-reach, oxalate-pure and non-oxalate samples. Uricite-pure and uricite-rich samples can be easily clustered.      

Calculation of ionization potentials of small molecules: a comparative study of different methods

With the help of various theoretical methods, ionization potentials (IPs) have been computed for a panel of small molecules containing atoms of group 14, 15, or 16 and representing different singly, doubly, or triply bonded systems with or without an interacting heteroatom lone pair. Comparison of experimental IP values to theoretical results indicates that (i) the standard outer valence green function (OVGF), density functional theory (DFT), and DeltaSCF methods lead to rather accurate values, (ii) the CASPT2 method systematically underestimates IPs, (iii) the method of deducing IPs from a shift of some standard DFT eigenvalue spectrum is a straightforward approach leading to rather accurate IPs, (iv) the eigenvalue spectrum obtained with the so-called statistical average of different orbital model potential (SAOP) exchange-correlation model potential is an efficient approach leading directly to quite accurate IPs, and (v) a good prediction of the IP spectrum can be obtained from the shifted excitation spectra of the system calculated by the time-dependent DFT (TD-DFT) method. It is also shown that the TD-DFT calculations of the ionized species bring a significant improvement over the calculations of the neutral molecules, indicating that a great part of the electronic relaxation is already taken into account (in a similar way for all ionizations). Finally, in the case of TD-DFT calculations of neutral molecules, the statistical average of different orbital model potential (SAOP) functional does not lead to significantly better results than the B3LYP functional.     

Effect of anchoring groups on single-molecule conductance: comparative study of thiol-, amine-, and carboxylic-acid-terminated molecules

We studied the effect of anchoring groups on the conductance of single molecules using alkanes terminated with dithiol, diamine, and dicarboxylic-acid groups as a model system. We created a large number of molecular junctions mechanically and analyzed the statistical distributions of the conductance values of the molecular junctions. Multiple sets of conductance values were found in each case. The I-V characteristics, temperature independence, and exponential decay of the conductance with the molecular length all indicate tunneling as the conduction mechanism for these molecules. The prefactor of the exponential decay function, which reflects the contact resistance, is highly sensitive to the anchoring group, and the decay constant is weakly dependent on the anchoring group. These observations are attributed to different electronic couplings between the molecules and the electrodes and alignments of the molecular energy levels relative to the Fermi energy level of the electrodes introduced by different anchoring groups. For diamine and dicarboxylic-acid groups, the conductance values are sensitive to pH due to protonation and deprotonation of the anchoring groups. Further insight into the binding strengths of these anchoring groups to gold electrodes is obtained by statistically analyzing the stretching length of molecular junctions.     

Capillary electrophoresis using copolymers of different composition as physical coatings: a comparative study

In this work, a comparative study on the use of different polymers as physically adsorbed coatings for CE is presented. It is demonstrated that the use of ad hoc synthesized polymers as coatings allows tailoring the EOF in CE increasing the flexibility of this analytical technique. Namely, different polymers were synthesized at our laboratory using different percentages of ethylpyrrolidine methacrylate (EpyM) and N,N-dimethylacrylamide (DMA). Thus, by modifying the percentage of EpyM and DMA monomers it is possible to manipulate the positive charge of the copolymer, varying the global electrical charge on the capillary wall and with that the EOF. These coated capillaries are obtained by simply flushing a given EpyM-DMA aqueous solution into bare silica capillaries. It is shown that by using these coated capillaries at adequate pHs, faster or more resolved CE separations can be achieved depending on the requirements of each analysis. Moreover, it is demonstrated that these coated capillaries reduce the electrostatic adsorption of basic proteins onto the capillary wall. Furthermore, EpyM-DMA coatings allow the reproducible chiral separation of enantiomers through the partial filling technique (PFT). The EpyM-DMA coated capillaries are demonstrated to provide reproducible EOF values independently of the pH and polymer composition with%RSD values lower than 2% for the same day. It is also demonstrated that the coating procedure is reproducible between capillaries. The compatibility of this coating protocol with CE in microchips is discussed.     

Effect of peptide lipidation on membrane perturbing activity: a comparative study on two trichogin analogues

The effect of lipidation on the membrane perturbing activity of peptaibol antibiotics was investigated by performing a comparative study on two synthetic analogues of the natural peptide trichogin GA IV. Both analogues were labeled with a hydrophobic fluorescent probe, but one of them lacked the N-terminal n-octanoyl chain, present in the natural peptide. Spectroscopic studies show that the fatty acyl chain produces two opposite effects: it increases the affinity of the monomeric peptide for the membrane phase, but, at the same time, it favors peptide aggregation in water, thus inhibiting membrane binding by reducing the effective monomer concentration. In the membrane phase the two analogues exhibit the same aggregation and orientation behavior, indicating that the n-octanoyl chain plays no specific role in determining their orientation or membrane perturbing activity. Indeed, the dependence of peptide-induced membrane leakage on total peptide concentration is basically the same for the two analogues, because the aforementioned opposite effects, caused by peptide lipidation, tend to balance. These findings make questionable the use of lipidation as a general method for increasing the peptide membrane-perturbing activity, as its validity seems to be restricted to parent compounds of limited overall hydrophobicity.     

Chip-calorimetric evaluation of the efficacy of antibiotics and bacteriophages against bacteria on a minute-timescale

Rapid detection of antibiotic resistances of clinical bacterial strains would allow an early selective antibiotic therapy and a faster intervention and implementation of infection control measurements. In clinical practice, however, conventional antibiotic susceptibility tests of bacteria often need 24 h until the results are obtained. The metabolic heat production of bacteria is an excellent possibility to record their physiological activities and could therefore be used for a rapid discrimination of bacterial strains which are resistant or non-resistant to antibiotics and also to lytic bacteriophages, respectively. Unfortunately, conventional calorimeters suffer from need of comparably large volumes of bacterial suspensions are characterised by slow operation and high costs which restrict their application in clinical laboratories. The present paper demonstrates that a new type of calorimeters developed on silicon-chip technology enables the detection of antibiotic resistances on a minute-timescale. For this reasons, a prototype chip calorimeter was used which sensitivity is 20 nW related to the heat production of about 10⁴ bacteria. For a clear discrimination of antibiotic resistance about 10⁵ bacteria are required. The antibiotic resistances and susceptibilities of different strains of Staphylococcus aureus to cefoxitin and the sensitivities of S. aureus DSM 18421 and E. coli DSM 498 to a mixture of two bacteriophages were studied. Comparing the heat productions of cultures incubated with antibiotics or bacteriophages to those without these antibacterial preparations enabled a clear discrimination of resistant and non-resistant strains already after totally 2 h.     

Microbiologically influenced corrosion of 304 stainless steel by aerobic Pseudomonas NCIMB 2021 bacteria: AFM and XPS study

Microbiologically influenced corrosion (MIC) of stainless steel 304 by a marine aerobic Pseudomonas bacterium in a seawater-based medium was investigated by atomic force microscopy (AFM) and X-ray photoelectron spectroscopy (XPS). AFM was used to observe in situ the proliferation of a sessile Pseudomonas cell by binary fission. The development of a biofilm on the coupon surface and the extent of corrosion damage beneath the biofilm after various exposure times were also characterized by AFM. Results showed that the biofilm formed on the coupon surface increased in thickness and heterogeneity with time, and thus resulting in the occurrence of extensive micro-pitting corrosion; whilst the depth of pits increased linearly with time. The XPS results confirmed that the colonization of Pseudomonas bacteria on the coupon surface induced subtle changes in the alloy elemental composition in the outermost layer of surface films. The most significant feature resulting from microbial colonization on the coupon surface was the depletion of iron (Fe) and the enrichment of chromium (Cr) content as compared to a control coupon exposed to the sterile medium, and the enrichment of Cr increased with time. These compositional changes in the main alloying elements may be correlated with the occurrence of extensive micropitting corrosion on the surface.     

5-Aminolaevulinic acid (ALA) induced formation of different fluorescent porphyrins: a study of the biosynthesis of porphyrins by bacteria of the human digestive tract

Aminolaevulinic acid (ALA) induces porphyrin formation in almost all living cells. The fluorescence spectra of porphyrins produced from a variety of 31 bacterial strains from the human oral cavity and other parts of digestive tract have been examined. Many of the bacteria exposed to ALA were able to induce protoporphyrin IX (PpIX) fluorescence, but under aerobic condition some bacteria can also produced different fluorescent porphyrins, in particular water-soluble porphyrins that can arise from an oxidation of the corresponding porphyrinogen precursors. The formation of fluorescent porphyrins can be different from one bacterial strain to another, but also one specific bacterium can form different fluorescent porphyrins. Irradiation of the ALA incubated cultures led to a rapid formation of water-soluble porphyrins exhibiting fluorescence maxima at wavelengths of 618-620 nm. This light induced formation of water-soluble porphyrins could be attributed to a photooxidation of the non-fluorescent (Uro/Copro)-porphyrinogen precursors. Addition of detergents to some of the bacterial cultures led to a strong PpIX fluorescence increase, indicating that some of the PpIX originally produced can be present in a non-fluorescent, probably aggregated, form. The large abundance of bacteria in the oral cavity and other parts of digestive tract, with their capacity to easily produce fluorescent porphyrins, indicates that such bacterial fluorescence should be suppressed during the ALA-based diagnosis of tumours in order to eliminate false positive results.     

Enhanced infrared absorption in a comparative study between multi-sensitive and multiresistant bacteria of the genus Klebsiella sp.

We study the infrared spectral profile of bacteria of the genus Klebsiella sp. with respect to sensitivity and resistance. The differentiation between these organisms can properly guide the therapeutic conduct. We processed the samples obtained from the laboratory of Hospital Santos Dumont in a Mac Conckey culture medium. After that, we processed a micromass to provide a thin film for evaluation by FTIR spectroscopy. The pilot study was performed using glass slides and glass slides coated with a copper sheet of 45 μm thickness as support for the samples. After the bibliographical review, we highlight the relationship between the amino acid serine and bacterial resistance in this type of bacteria, which occurs through plasmids. We collected spectra from 50 bacterial strains divided in two groups: 25 sensitive and 25 resistant strains on glass, and 21 sensitive and 21 resistant strains on the copper sheet. We obtained the composition of the samples by evaluating the spectra with multivariate analysis using the second derivative. We concluded that infrared spectroscopy could also be used to identify multiresistant bacteria of the genus Klebsiella sp. by means of the amino acid serine, which can be considered as a marker of resistance found only in multiresistant forms.     

Subcellular localization based comparative study on radioresistant bacteria: A novel approach to mine proteins involve in radioresistance

Radioresistant bacteria (RRB) are among the most radioresistant organisms and has a unique role in evolution. Along with the evolutionary role, radioresistant organisms play important role in paper industries, bioremediation, vaccine development and possibility in anti-aging and anti-cancer treatment. The study of radiation resistance in RRB was mainly focused on cytosolic mechanisms such as DNA repair mechanism, cell cleansing activity and high antioxidant activity. Although it was known that protein localized on outer areas of cell play role in resistance towards extreme condition but the mechanisms/proteins localized on the outer area of cells are not studied for radioresistance. Considering the fact that outer part of cell is more exposed to radiations and proteins present in outer area of the cell may have role in radioresistance. Localization based comparative study of proteome from RRB and non-radio resistant bacteria was carried out. In RRB 20 unique proteins have been identified. Further domain, structural, and pathway analysis of selected proteins were carried out. Out of 20 proteins, 8 proteins were direct involvement in radioresistance and literature study strengthens this, however, 1 proteins had assumed relation in radioresistance. Selected radioresistant proteins may be helpful for optimal use of RRB in industry and health care.     

Effect of heteropolyacids on the hydrocarboxylation of styrene: comparative study on hydrocarboxylation and hydroesterification reactions

The hydrocarboxylation and the hydroesterification of styrene was studied in the presence of PdCl₂(PPh₃)₂ as a catalyst. The effect of the addition of the heteropolyacids of a general formula H_3+nPMo_12-nV_nO₄₀ (HPA-n, n=1-4) on the hydrocarboxylation and the hydroesterification of styrene was considered.