Effect of sodium dodecyl sulfate and cetyltrimethylammonium bromide catanionic surfactant on the enzymatic hydrolysis of Avicel and corn stover

Nonionic surfactants could effectively improve the enzymatic hydrolysis efficiency of lignocellulose, while small molecule anionic and cationic surfactants usually inhibited the enzymatic hydrolysis. The results showed that the anionic surfactant sodium dodecyl sulfate (SDS) could improve the enzymatic hydrolysis efficiency of Avicel at the concentration range of 0.1–1 mM, but it did inhibit enzymatic hydrolysis at higher concentration. Cationic surfactant cetyltrimethylammonium bromide (CTAB) was used to regulate the surface charge of SDS; thereby catanionic surfactant SDS-CTAB was formed. The effect of SDS-CTAB catanionic surfactant with varied molar ratios on the enzymatic hydrolysis of pure cellulose and corn stover at various enzymatic hydrolysis environments was investigated. SDS-CTAB could increase the enzymatic hydrolysis of corn stover at high solid loading from 33.3 to 42.4%. Using SDS-CTAB could reduce about 58% of the cellulase dosage to achieve 80% of the enzymatic hydrolysis of corn stover. SDS-CTAB catanionic surfactant could regulate the surface charge of cellulase in the hydrolyzate and reduce the non-productive adsorption of cellulase on the lignin, thereby improving the enzymatic hydrolysis efficiency of lignocellulose.     

Acoustic deposition with NIMS as a high-throughput enzyme activity assay

Mass spectrometry (MS)-based enzyme assay has been shown to be a useful tool for screening enzymatic activities from environmental samples. Recently, reported approaches for high-specificity multiplexed characterization of enzymatic activities allow for providing detailed information on the range of enzymatic products and monitoring multiple enzymatic reactions. However, the throughput has been limited by the slow liquid-liquid handling and manual analysis. This rapid communication demonstrates the integration of acoustic sample deposition with nanostructure initiator mass spectrometry (NIMS) imaging to provide reproducible measurements of multiple enzymatic reactions at a throughput that is tenfold to 100-fold faster than conventional MS-based enzyme assay. It also provides a simple means for the visualization of multiple reactions and reaction pathways.     

Predicting digestibility of ammonia fiber explosion (AFEX)-treated rice straw

The enzymatic digestibility of ammonia fiber explosion (AFEX)-treated rice straw was modeled by statistically correlating the variability of samples to differences in treatment using several different analytical techniques. Lignin content and crystallinity index of cellulose affect enzymatic hydrolysis the most. X-ray diffraction was used to measure the crystallinity index (CrI), while fluorescence and diffuse reflectance infrared (DRIFT) spectroscopy measured the lignin content of the samples. Multivariate analysis was applied to correlate the enzymatic hydrolysis results of the various samples with X-ray diffraction and spectroscopic data. Principal component analysis (PCA) and multilinear regression (MLR) techniques did not accurately predict the digestibility of the rice straw samples. The best correlation (R value of 0.775) was found between the treatment conditions of the AFEX process and the concentration of xylose at 24 h after enzymatic hydrolysis.     

Steering the enzymatic activity of proteins by ionic liquids. A case study of the enzyme kinetics of yeast alcohol dehydrogenase

We explore ion-specific effects exerted by ionic liquids (ILs) on the enzyme kinetics of yeast alcohol dehydrogenase. The Michaelis-Menten reaction scheme is used to parameterize the observed kinetics in terms of the apparent dissociation constant of the substrate (Michaelis-Menten constant) K(M), the turnover number k(cat), which reflects the number of product molecules per enzyme molecule per second, and the enzymatic efficiency k(cat)/K(M) of the reaction. Results for fifteen salts are used to deduce Hofmeister anion and cation series. The ion rankings derived from K(M), k(cat) and k(cat)/K(M) differ markedly. Only the results for the enzymatic efficiency correspond to expectations from other phenomena, such as the thermal stability of native proteins. Anion variation has a significantly larger effect on the enzymatic efficiency than cation variation. All ILs decrease k(cat) relative to its value for the IL-free solution, thus driving enzyme deactivation. Enhancements of the enzymatic efficiency by some ions are founded in their effects on the Michaelis-Menten constant. The observed Hofmeister anion and cation series point toward hydrophobic interactions as an important factor controlling ion-specific effects on the enzymatic activity.     

High-performance liquid chromatography/electrospray ionization tandem mass spectrometry for characterization of enzymatic degradation of 2,2'-bis(2-oxazoline)-linked poly-epsilon-caprolactone

This paper describes a straightforward and rapid on-line characterization using high-performance liquid chromatography/electrospray ionization tandem mass spectrometry (HPLC/ESI-MS(n)) of the enzymatic degradation products of 2,2'-bis(2-oxazoline)-linked poly-epsilon-caprolactone (PCL-O). These new PCL-O polymers are expected to be used in a variety of pharmaceutical and biomedical applications since they are degraded enzymatically by surface erosion. PCL-O was polymerized in a three-step reaction and characterized by (1)H-NMR and size-exclusion chromatography (SEC). Solvent cast polymer films were exposed to enzymatic degradation in phosphate buffer (pH 7.5, 1% pancreatin). The enzymatic degradation of the polymer produced a wide variety of water-soluble oligomers which were separated and identified by HPLC/ESI-MS(n). Optimization of the gradient HPLC method resulted in effective separation of the oligomers. Furthermore, specific structures of the oligomers were clearly identified by tandem mass spectrometry. According to these results, ester bonds seem to be most sensitive to enzymatic degradation and, correspondingly, pancreatic lipase seems to be mainly responsible for the enzymatic erosion of the PCL-O films. This novel mass spectrometric method provides important knowledge about the enzymatic degradation process and structure of the polymer which is difficult to ascertain by other conventional methods.     

Glycerol nucleoside triphosphates: synthesis and polymerase substrate activities

[Structure: see text] The synthesis of (S)-glycerol nucleoside triphosphates (gNTPs) and the analysis of their substrate activities for enzymatic polymerization is described. NTPs with simplified carbohydrate backbones such as the tNTPs (alpha-L-threose-NTPs) are polymerase substrates and offer the potential to create non-natural aptamer sequences with simplified backbones through enzymatic means. The acyclic (S)-GNA was modeled after the shortened alpha-threofuranosyl backbone. Here we describe the synthesis of (S)-glycerol NTPs and initial enzymatic testing of this further simplified nucleic acid backbone.     

Stability improvement of immobilized Candida antarctica lipase B in an organic medium under microwave radiation

The influence of microwave heating on the stability of immobilized Candida antarctica lipase B was studied at 100 degrees in an organic medium. The microwave radiation was carried out before enzymatic reaction (storage conditions) or during the enzymatic catalysis (use conditions). In both cases, enzymatic stability was higher under microwave heating than under conventional thermal heating, in strictly identical operating conditions. Furthermore, the gain of enzymatic stability under microwave heating appears to be higher in a more polar solvent, which interacts strongly with the microwave field. Our results suggest that microwave radiation has an effect, not related to temperature, on the process of enzymatic inactivation.     

Solid-State Treatment of Castor Cake Employing the Enzymatic Cocktail Produced from <Emphasis Type="Italic">Pleurotus djamor</Emphasis> Fungi

In this work, the enzymatic cocktail produced by Pleurotus djamor fungi extracted at pH of 4.8 and 5.3 was employed for castor cake solid-state treatment. Proximal, X-ray powder diffraction and scanning electron microscopy analysis of the pristine castor cake were carried out. First, Pleurotus djamor stain was inoculated in castor cake for the enzymatic production and the enzymatic activity was determined. The maximum enzymatic activity was identified at days 14 (65.9 UI/gss) and 11 (140.3 UI/gss) for the enzymatic cocktail obtained at pH 5.3 and 4.8, respectively. Then, the enzymatic cocktail obtained at the highest enzymatic activity days was employed directly over castor cake. Lignin was degraded throughout incubation time achieving a 47 and 45% decrease for the cocktail produced at pH 4.8 and 5.3, correspondingly. These results were corroborated by the SEM and XRD analysis where a higher porosity and xylan degradation were perceived throughout the enzymatic treatment.     

A versatile and selective chemo-enzymatic synthesis of β-protected aspartic and γ-protected glutamic acid derivatives

Two versatile, high yielding, and efficient chemo-enzymatic methods for the synthesis of β-protected Asp and γ-protected Glu derivatives using Alcalase are described. The first method is based on the α-selective enzymatic hydrolysis of symmetrical aspartyl and glutamyl diesters. The second method involving mixed diesters comprises a three-step protocol using (i) α-selective enzymatic methyl-esterification, (ii) chemical β-esterification, and finally (iii) α-selective enzymatic methyl ester hydrolysis. The yields of the purified β- and γ-esters range from 77% to 91%.     

Probing single-molecule enzyme active-site conformational state intermittent coherence

The relationship between protein conformational dynamics and enzymatic reactions has been a fundamental focus in modern enzymology. Using single-molecule fluorescence resonance energy transfer (FRET) with a combined statistical data analysis approach, we have identified the intermittently appearing coherence of the enzymatic conformational state from the recorded single-molecule intensity-time trajectories of enzyme 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (HPPK) in catalytic reaction. The coherent conformational state dynamics suggests that the enzymatic catalysis involves a multistep conformational motion along the coordinates of substrate-enzyme complex formation and product releasing, presenting as an extreme dynamic behavior intrinsically related to the time bunching effect that we have reported previously. The coherence frequency, identified by statistical results of the correlation function analysis from single-molecule FRET trajectories, increases with the increasing substrate concentrations. The intermittent coherence in conformational state changes at the enzymatic reaction active site is likely to be common and exist in other conformation regulated enzymatic reactions. Our results of HPPK interaction with substrate support a multiple-conformational state model, being consistent with a complementary conformation selection and induced-fit enzymatic loop-gated conformational change mechanism in substrate-enzyme active complex formation.     

Quartz crystal microbalance with dissipation monitoring of the enzymatic hydrolysis of steam-treated lignocellulosic nanofibrils

Quartz crystal microbalance with dissipation (QCM-D) monitoring was performed to investigate the impact of steam treatment (ST) on the enzymatic hydrolysis of lignocellulosic nanofibrils (LCNFs). ST at mild temperatures up to 140 °C mainly affected the hemicellulose content of LCNFs. The hemicellulose constituents in the water-soluble fraction and the residual LCNF were quantified. The impact of changes in hemicellulose by ST on enzymatic hydrolysis was monitored by QCM-D using Acremonium cellulase as a source of multicomponent enzymes including hemicellulases. LCNFs without ST showed distinctive initial changes in frequency and energy dissipation, which differed from those of pure cellulose film, whereas these changes shifted toward typical changes of enzymatic hydrolysis of pure cellulosic films with increasing ST temperature. The QCM-D results suggested that hemicellulose located around cellulose microfibrils is rapidly decomposed, thus exposing the cellulose surface shortly after initial enzymatic hydrolysis, and then the main enzymatic hydrolysis of cellulose occurs.     

Enzymatic Degradation of Semi‐IPN Hydrogels Based on N‐Isopropylacrylamide and Dextran at a Specific Temperature Range

The temperature‐dependent enzymatic degradation of semi‐IPN hydrogels consisting of dextran grafted with thermo‐responsive chains (lower cloud point) and a thermo‐responsive crosslinked matrix (higher cloud point) was examined. Enzymatic degradation of the semi‐IPN hydrogel was significantly inhibited below the lower and above the higher cloud point. Only between both cloud points, enzymatic degradation proceeded. The designed semi‐IPN hydrogel is therefore advantageous to achieve enzymatic degradation at a specific temperature range.     

On-chip enzymatic assays

This article reviews different possibilities for conducting enzymatic assays on microchip platforms, along with potential advantages, limitations, and selected examples of such biochips. Enzyme-based chips combine the analytical power and reagent economy of microfluidic devices with the selectivity and amplification features of biocatalytic reactions. "Lab-on-chip" devices thus allow enzymatic assays to be performed more rapidly, easily, and economically. Such assays usually rely on on-chip mixing and reactions (of the substrates and enzymes) in connection to separations (of the substrates or products). The realization of on-chip enzymatic assays thus requires understanding of how enzymatic reactions behave on a small scale and can be interfaced with separation microchips, and how the microfluidics can be tailored to suit the requirements of particular enzymatic assays. The goal is to obtain sufficient reaction times, without compromising the quality of the analytical separation. The versatility of such on-chip enzymatic assays offers great promise for decentralized testing of clinically or environmentally important substrates.     

Effect of inhibitors released during steam-explosion pretreatment of barley straw on enzymatic hydrolysis

The influence of the liquid fraction (prehydrolysate) generated during steam-explosion pretreatment (210°C, 15 min) of barley straw on the enzymatic hydrolysis was determined. Prehydrolysate was analyzed for degradation compounds and sugars' content and used as a medium for enzymatic hydrolysis tests after pH adjusting to 4.8. Our results show that the presence of the compounds contained in the prehydrolysate strongly affects the hydrolysis step (a 25% decrease in cellulose conversion compared with control). Sugars are shown to be more potent inhibitors of enzymatic hydrolysis than degradation products.     

Monolith and coating enzymatic microreactors of L-asparaginase: kinetics study by MCE-LIF for potential application in acute lymphoblastic leukemia (ALL) treatment

The study of enzyme immobilization using an extracorporeal shunt system is essential to eliminate the side effects of L-asparaginase (L-Asnase; including hepatic toxicity, allergic reaction, pancreatitis, central nervous system toxicity and decreased synthesis of blood clotting factors) when it was applied as an anticancer drug given directly to patients by injection. Thus, the novel monolith and coating enzymatic reactors of L-asparaginase were provided in this assay and a microchip electrophoresis-laser induced fluorescence (MCE-LIF) method was set up for the enzyme kinetics study. The enzymatic reactors would be a promising in vitro therapeutic method in an extracorporeal shunt system for acute lymphoblastic leukemia (ALL) treatment. For the first time, L-asparaginase was covalently bound to the polymer monolith and coating in the capillary and the activity characteristics of these enzymatic microreactors have been probed by Michaelis-Menten kinetic constants. Meanwhile, the D,L-amino acids were chirally separated using microchip electrophoresis with a laser induced detector and D,L-aspartic acid (D,L-Asp) were tested for the L-asparaginase enzymatic reactor kinetics study. Furthermore, human serum adding with L-asparagine (L-Asn) as the sample was hydrolyzed by the enzymatic microreactors. The results demonstrated that the developed enzymatic microreactor of L-asparaginase would be a potential therapeutic protocol for ALL treatment.     

Cascade Enzymatic Hydrolysis Coupling with Ultra ne Grinding Pretreatment for Sugarcane Bagasse Sacchari cation

The biorefinery process for sugarcane bagasse saccharification generally requires significant accessibility of cellulose. We reported a novel method of cascade cellulase enzymatic hydrolysis coupling with ultrafine grinding pretreatment for sugarcane bagasse saccharification. Three enzymatic hydrolysis modes including single cellulase enzymatic hydrolysis, mixed cellulase enzymatic hydrolysis, and cascade cellulase enzymatic hydrolysis were compared. The changes on the functional group and surface morphology of bagasse during cascade cellulase enzymatic hydrolysis were also examined by FT-IR and SEM respectively. The results showed that cascade enzymatic hydrolysis was the most efficient way to enhance the sugarcane bagasse sacchari cation. More than 65% of reducing sugar yield with 90.1% of glucose selectivity was achieved at 50 oC, pH=4.8 for 72 h (1200 r/min) with cellulase I of 7.5 FPU/g substrate and cellulase II of 5 FPU/g substrate.     

生物酶HRP催化H~2O~2氧化间苯二胺反应的研究

应用电化学分析,高效液相色谱(HPLC),紫外-可见光谱(UV-vis),红外光谱(IR)和核磁共振(NMR)等技术对辣根过氧化物酶(HRP)催化H~2O~2氧化间苯二胺(MPD)的反应进行了研究。伏安法和高效液相色谱实验说明,在所选择的酶催化反应条件下,酶催化反应生成一种产物。用化学方法制得了HRP酶催化H~2O~2氧化MPD的产物纯品。经UV-vis,IR和^1HNMR谱鉴定,产物为2,7-二氨基吩嗪。写出了酶催化反应过程,同时对酶催化反应产物的电极还原过程也进行了研究。     

A mixed hard- and soft-modelling approach to study and monitor enzymatic systems in biological fluids

Mixed hard- and soft-modelling multivariate curve resolution (HS-MCR) is applied to study and to monitor complex enzymatic systems. Working under the basis of the soft-modelling technique multivariate curve resolution-alternating least squares (MCR-ALS), a hard constraint is introduced to force some or all concentration profiles to fulfil an enzymatic model. In this way, improvements to the application of pure hard- or pure soft-modelling are achieved.The enzymatic reactions of different mixtures of hypoxanthine, xanthine and uric acid with xanthine oxidase are studied. This is a complex enzymatic process, where uric acid acts as a linear competitive inhibitor. The reactions were monitored with UV-vis spectrophotometry coupled to a stopped-flow module.This work has two aims, both of them focusing on different aspects linked to modelling enzymatic systems using HS-MCR. The first goal is related to the elucidation of the real enzymatic mechanism when one of the chemical substances involved in the process apparently deviates from the mechanism found in the literature. The second one focuses on modelling the enzymatic reaction in the presence of a biological interference, such as human urine. The elucidation of the real mechanism of this enzymatic process and of the behaviour of the involved chemical species in a natural absorbing medium are good examples of situations that can benefit from mixed modelling approaches involving the best of hard- and soft-modelling methodologies.     

Chemoselective Removal of Protecting Groups from O-Glycosyl Amino Acid and Peptide (Methoxyethoxy)ethyl Esters Using Lipases and Papain

The selective C-terminal deprotection of O-glycopeptide (methoxyethoxy)ethyl esters is achieved under mild conditions (pH 6.6, 37 degrees C) by enzymatic hydrolysis using papain or lipase M from Mucor javanicus to give building blocks useful for chain-extending glycopeptide synthesis. On the other hand, the selective removal of acetyl protecting groups from the saccharide portion of glycopeptides is accomplished by alternative enzymatic hydrolysis with lipase WG from wheat germ to furnish model substrates for enzymatic glycosyl transfer reactions in order to extend the carbohydrate side chain of these conjugates.     

Enzymatic chain scission kinetics of poly(epsilon-caprolactone) monolayers

The hydrolytic and enzymatic degradation behavior of poly(epsilon-caprolactone) (PCL) is investigated using the Langmuir monolayer technique, and an improved data acquisition and data reduction procedure is presented. Hydrolytic and enzymatic monolayer degradation experiments of PCL with various molecular weights by Pseudomonas cepacia lipase have been carried out to analyze the influence of subphase pH, subphase temperature, enzyme concentration, and the packing density of polymer chains on the degradation kinetics. The enzymatic monolayer degradation results in an exponential increase in the number of dissolved degradation fragments with increasing degradation time, which confirms random chain scission to be the dominant scission mechanism. The increase in the enzymatic scission rate constant with decreasing initial average molecular weight of the polymers is assigned to the influence of the area density of polar terminal groups on the substrate-enzyme complex formation.