Theoretical study of interaction of 2,6-dithiopurine with Li+, Na+, K+, Be2+, Mg2+, and Ca2+ metal cations

The geometries of the complexes of Li⁺, Na⁺, K⁺, Be²⁺, Mg²⁺, and Ca²⁺ metal cations with different possible 2,6-dithiopurine anions (DTP) were studied. The complexes were optimized at the B3LYP level and the 6-311++G(d, p) basis set. The interactions of the metal cations at different nucleophilic sites of various possible 2,6-dithiopurine anions were considered. It was revealed that metal cations would interact with 2,6-dithiopurine anions in a bicoordinate manner. In the gas phase, the most preferred position for the interaction of Li⁺, Na⁺, and K⁺ cations is between the N₃ and S₂ sites, while all divalent cations Be²⁺, Mg²⁺, and Ca²⁺ prefer binding between the N₇ and S₆ sites of the corresponding 2,6-dithiopurine. The influence of aqueous solvent on the relative stability of different complexes has been examined using the Tomasi’s polarized continuum model. The basis set superposition error (BSSE) corrected interaction energy was also computed for complexes. The AIM theory has been applied to analyze the properties of the bond critical points (electron densities and their Laplacians) involved in the coordination between 2,6-dithiopurine anions and the metal cations. It was revealed that aqueous solution would have significant effect on the relative stability of complexes obtained by the interaction of 2,6-dithiopurine anions with Mg²⁺ and Ca²⁺ cations. The effect of metal cations on different NH and CS stretching vibrational modes of 2,6-dithiopurine has also been discussed.     

Comprehensive study on the solvation of mono- and divalent metal cations: Li+, Na+, K+, Be2+, Mg2+ and Ca2+

Hydration of mono- and divalent metal ions (Li(+), Na(+), K(+), Be(2+), Mg(2+) and Ca(2+)) has been studied using the DFT (B3LYP), second-order M?ller-Plesset (MP2) and CCSD(T) perturbation theory as well as the G3 quantum chemical methods. Double-zeta and triple-zeta basis sets containing both (multiple) polarization and diffuse functions were applied. Total and sequential binding energies are evaluated for all metal-water clusters containing 1-6 water molecules. Total binding energies predicted at lower levels of theory are compared with those from the high level G3 calculations, whereas the sequential binding energies are compared with available experimental values. An increase in the quality of the basis set from double-zeta to triple-zeta has a significant effect on the sequential binding energies, irrespective of the geometries used. Within the same group (I or II), the sequential binding energy predictions at the MP2 and B3LYP vary appreciably. We noticed that, for each addition of a water molecule, the change of the M-O distance in metal-water clusters is higher at the B3LYP than at the MP2 level. The charge of the metal ion decreases monotonically as the number of water molecules increase in the complex.     

Structural and electronic properties of complexes between Li+, Na+, Be2+, and Mg2+ ions and HF,H2O,and NH3 molecules

Theoretical and Experimental Chemistry -     

Napthaquinone derived ionophores: interaction with biologically important metal ions (Li+, Na+, K+, Mg2+ and Ca2+)

The synthetic model systems based on the study of supramolecular compounds are proficient in mimicking the biological processes so as to get the insight of their processes. In this perspective, a series of naphthaquinone derived redox switchable ionophores namely D₁ (2,3,5,6,8,9,11,12-octahydronaphtho [2,3b] [1,4,7,10,13] pentaoxacyclo octadecine-14,19-dione) and D₂ (2,3,5,6,8,9-hexahydronaphtho[2,3-b] [1,4,7,10] tetraoxacyclododecine-11,16-dione) have been synthesized and interacted with Li⁺, Na⁺, K⁺, Ca²⁺, Mg²⁺ cations. The isolated solid state soft materials obtained after interaction were characterized by melting point, TLC, ¹H NMR spectroscopy and CHN estimation. The extraction, transport potential and stability constant determination of these ionophores towards cations helped in investigating their binding strength in solution. The selective extraction of Na⁺ and Li⁺ by D₁ and D₂ correspondingly proves them an efficient compound for the manufacturing of chemosensor. Whereas efficient transport of Mg²⁺ by both the ionophores especially by D₁ may assist in developing biomodels for understanding its transport through membrane in living system. The selectivity of these ionophores towards metal ions can be modulated by molecular tailoring.     

金属离子(Na~+、K~+、Ca~(2+)、Mg~(2+)、Zn~(2+))与鸟嘌呤异构体配合物的稳定性

在B3LYP/6-311++G**水平上用极化连续介质模型(PCM)系统研究了金属离子(M+/2+=Na+,K+,Ca2+,Mg2+,Zn2+)和十三种鸟嘌呤异构体形成的配合物GnxM+/2+(n为鸟嘌呤异构体的编号,x表示M+/2+与鸟嘌呤异构体的结合位点)在气(g)液(a)两相中的稳定性顺序.着重探讨了液相中配合物的稳定性差异,并且从溶质-溶剂效应、结合能、形变能及异构体的相对能量等几个方面分析了造成稳定顺序发生变化的原因.报道了溶液中这五种金属离子与鸟嘌呤异构体结合形成的六种基态配合物:aG1N2,N3Na+,aG1N2,N3K+,aG1O6,N7Ca2+,aG1N2,N3Mg2+(aG1O6,N7Mg2+),aG2N3,N9Zn2+.可以看出,除了在Zn2+配合物中鸟嘌呤异构体为G2外,构成其余四种金属离子配合物的鸟嘌呤异构体都是G1,但结合位点不同.同时对气相中各类配合物稳定性也进行了系统的排序,并报道了几种较稳定的配合物,如:gG3N1,O6K+,gG5N1,O6K+,gG3N1,O6Ca2+/Mg2+,gG4O6,N7Ca2+/Mg2+.     

啤酒酵母生理代谢过程中钠、钾、镁、钙离子含量变化的跟踪检测

采用空气-乙炔火焰原子吸收光谱法分别测定了啤酒酵母发酵液中的Na^ 、K^ 、Mg^2 、Ca^2 离子动态变化中的含量,用La^3 盐消除P对Ca^3 的干扰,以Sr^2 盐作为Na^ 、K^ 的消电离剂。本实验室采用配制培养基,通过对不同种类及不同发酵阶段培养的发酵液样品进行测定,以研究在啤酒酵母生长代谢过程中Na^ 、K^ 、Mg^2 、Ca^2 离子代谢动态变化。方法的Na^ 、K^ 、Mg^2 、Ca^2 相对标准偏差(RSD)分别为0．31％,0．73％。1．78％,0．28％;样品加标回收率为98％-107％;检出限：Na^ 为0．159mg／L,K^ 为0．789nag／L,Mg^2 为0．039mg／L,Ca^2 为0．029mg／L。该方法简便快速,具有很好的精密度。     

Molecular structure and bonding character of mono and divalent metal cations (Li+, Na+, K+, Be2+, Mg2+, and Ca2+) with substituted benzene derivatives: AIM,NBO, and NMR analyses

Cation–π complexes between several cations (Li⁺, Na⁺, K⁺, Be²⁺, Mg²⁺, and Ca²⁺) and different π-systems such as para-substituted (F, Cl, OH, SH, CH₃, and NH₂) benzene derivatives have been investigated by UB3LYP method using 6-311++G** basis set in the gas phase and the water solution. The ions have shown cation–π interaction with the aromatic motifs. Vibrational frequencies and physical properties such as dipole moment, chemical potential, and chemical hardness of these compounds have been systematically explored. The natural bond orbital analysis and the Bader’s quantum theory of atoms in molecules are also used to elucidate the interaction characteristics of the investigated complexes. The aromaticity is measured using several well-established indices of aromaticity such as NICS, HOMA, PDI, FLU, and FLUπ. The MEP is given the visual representation of the chemically active sites and comparative reactivity of atoms. Furthermore, the effects of interactions on NMR data have been used to more investigation of the studied compounds.     

Ab initio Investigation on Unhydrated Ion-associated Species Between Na+, Li+, Mg2+ and SO2-4 Ions

计算并讨论了Na+,Li+和Mg2+3种离子与SO2-4离子形成离子缔合物的结构以及阳离子的结合对v1-SO2-4频率的影响.结果表明,在缔合物结构方面,阳离子数目越少,离子间斥力越小,越容易形成阳离子与硫酸根间距离更短、结合更紧密的双齿缔合结构;而当阳离子数目增加时,特别是当具有2个正电荷的Mg2+离子数目较多时,离子间的斥力使多离子团簇不稳定,易形成阳离子与硫酸根间距离更长的单齿缔合结构.有2种阳离子作用可影响v1 -SO2-4频率,一种是极化作用,可使v1-SO2-4频率红移;另一种是成键作用,可使v1 -SO2-4频率蓝移.当金属离子数目≤2时,阳离子的极化作用占主导地位,第一个阳离子能使v1-SO2-4频率发生红移,而当阳离子数目增多时,不同方向结合的其它阳离子可以削弱第一个阳离子的极化作用,因此导致多离子团簇中v1-SO2-4频率红移的减小.当阳离子数目≥3时,极化作用影响减小,成键作用占据主导地位,导致v1 -SO2-4频率更大蓝移的单齿缔合结构取代双齿结构,并使多离子团簇中的v1-SO2-4频率继续发生蓝移.     

Redox Hyperactive MOF for Li+, Na+ and Mg2+ Storage

To create both greener and high-power metal-ion batteries, it is of prime importance to invent an unprecedented electrode material that will be able to store a colossal amount of charge carriers by a redox mechanism. Employing periodic DFT calculations, we modeled a new metal-organic framework, which displays energy density exceeding that of conventional inorganic and organic electrodes, such as Li- and Na-rich oxides and anthraquinones. The designed MOF has a rhombohedral unit cell in which an Ni(II) node is coordinated by 2,5-dicyano-p-benzoquinone linkers in such a way that all components participate in the redox reaction upon lithiation, sodiation and magnesiation. The spatial and electronic changes occurring in the MOF after the interaction with Li, Na and Mg are discussed on the basis of calculated electrode potentials versus Li⁰/Li⁺, Na⁰/Na⁺ and Mg⁰/Mg²⁺, respectively. In addition, the specific capacities and energy densities are calculated and used as a measure for the electrode applicability of the designed material. Although the highest capacity and energy density are predicted for Li storage, the greater structural robustness toward Na and Mg uptake suggests a higher cycling stability in addition to lower cost. The theoretical results indicate that the MOF is a promising choice for a green electrode material (with <10% heavy metal content) and is well worth experimental testing.     

Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water coordination on the structure of glycine and zwitterionic glycine

Interactions between metal ions and amino acids are common both in solution and in the gas phase. Here, the effect of metal ions and water on the structure of glycine is examined. The effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water on structures of Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (m = 0, 2, 5) complexes have been determined theoretically by employing the hybrid B3LYP exchange-correlation functional and using extended basis sets. Selected calculations were carried out also by means of CBS-QB3 model chemistry. The interaction enthalpies, entropies, and Gibbs energies of eight complexes Gly.Mn+ (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) were determined at the B3LYP density functional level of theory. The computed Gibbs energies DeltaG degrees are negative and span a rather broad energy interval (from -90 to -1100 kJ mol(-1)), meaning that the ions studied form strong complexes. The largest interaction Gibbs energy (-1076 kJ mol(-1)) was computed for the NiGly2+ complex. Calculations of the molecular structure and relative stability of the Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+; m = 0, 2, and 5) systems indicate that in the complexes with monovalent metal cations the most stable species are the NO coordinated metal cations in non-zwitterionic glycine. Divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ prefer coordination via the OO bifurcated bonds of the zwitterionic glycine. Stepwise addition of two and five water molecules leads to considerable changes in the relative stability of the hydrated species. Addition of two water molecules at the metal ion in both Gly.Mn+ and GlyZwitt.Mn+ complexes reduces the relative stability of metallic complexes of glycine. For Mn+ = Li+ or Na+, the addition of five water molecules does not change the relative order of stability. In the Gly.K+ complex, the solvation shell of water molecules around K+ ion has, because of the larger size of the potassium cation, a different structure with a reduced number of hydrogen-bonded contacts. This results in a net preference (by 10.3 kJ mol(-1)) of the GlyZwitt.K+H2O5 system. Addition of five water molecules to the glycine complexes containing divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ results in a net preference for non-zwitterionic glycine species. The computed relative Gibbs energies are quite high (-10 to -38 kJ mol(-1)), and the NO coordination is preferred in the Gly.Mn+(H2O)5 (Mn+ = Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) complexes over the OO coordination.     

Theoretical study on the interaction of glutathione with group IA (Li+, Na+, K+), IIA (Be2+, Mg2+, Ca2+), and IIIA (Al3+) metal cations

The structures and energies of complexes obtained upon interaction between glutathione (GSH) and alkali (Li⁺, Na⁺, K⁺), or alkaline earth metal (Be²⁺, Mg²⁺, Ca²⁺), or group IIIA (Al³⁺) cations were studied using quantum chemical density functional theory. The characteristics of the interactions between GSH and the metal cations at different nucleophilic sites of GSH were examined selecting systematically, both mono- and multi-coordinating were taken into account. The results indicated that the heteroatom of GSH, the radius and charge of metal ion, and the coordination number of the metal cation with the ligand played important roles in determining the stability of these complexes. Moreover, the intramolecular hydrogen migration in GSH could be promoted by the metal cations during coordination reaction. Furthermore, the Al³⁺ cation might catalyze the decarboxylation reaction and stimulate the formation of covalent bond between S atom and adjacent O atom of GSH.     

Effect of ring annelation on cations [M = H+, Li+, Na+, K+, Be2+, Mg2+, and Ca2+]…benzene interaction: A density functional theory investigation

Density functional theory calculation was carried out on cation‐π complexes formed by cations [M = H⁺, Li⁺, Na⁺, K⁺, Be²⁺, Mg²⁺, and Ca²⁺] and π systems of annelated benzene. The cation‐π bonding energy of Be²⁺ or Mg²⁺ with annelated benzene is very strong in comparison with the common cation‐π intermolecular interaction, and the bonding energies follow the order Be²⁺ > Mg²⁺ > Ca²⁺ > Li⁺ > Na⁺ > K⁺. Similarly, the interaction energies follow the trend 1‐M < 2‐M < 3‐M for all the metal cations considered. These outcomes may be due to the weak interactions of the metal cations with C? H and the interactions of metal cations with π in addition to the nature of a metal cation. We have also investigated on all the possible substituted sites, and find that the metal ion tends to interact with all ring atoms while proton prefers to bind covalently to one of the ring carbons. The binding of metal cations with annelated benzenes has striking effect on nuclear magnetic resonance chemical shifts using the gauge independent atomic orbital method. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Theoretical study of the structure and stability of complexes of molecular hydrogen with K+, Cu+, Be2+, and Zn2+

Institute of New Chemical Problems, Academy of Sciences of the USSR. Translated from Zhurnal Strukturnoi Khimii, Vol. 30, No. 3, pp. 11–18, May–June, 1989.