Fundamental metal carbonyl equilibria: III. A quantitative study of the equilibrium between dirhodium octacarbonyl and tetrarhodium dodecacarbonyl under carbon monoxide pressure. A correction

Previously reported (J. Organomet. Chem., 246 (1983) 309) experimental data for the equilibrium constants and thermodynamic parameters of the reversible reaction 2 Rh₂(CO)₈ ? Rh₄(CO)₁₂ + 4 CO have been re-evaluated using more reliable values for the solubility of carbon monoxide in hexane at lower than room temperature and introducing also a fugacity vs. pressure correction for carbon monoxide. The new values are: ΔH0 = 58.6 ± 10 kJ mol^?1 and ΔS⁰ = 305 ± 25 J mol^?1 K^?1     

Kinetics and mechanism of the reaction of tetracobalt dodecacarbonyl with carbon monoxide under pressure

The kinetics of the reaction of tetracobalt dodecacarbonyl with carbon monoxide to form dicobalt octacarbonyl in n-hexane have been investigated over a wide range of temperature and CO pressure. The reaction is first order in [Co₄(CO)₁₂]; the order in [CO] changes between one (at low pressures and high temperatures) and two (at high pressures and low temperatures).Activation parameters have been estimated and a mechanism involving initial reversible breaking of one CoCo bond, followed by irreversible breaking of a second, is proposed. The first step involves concerted addition of CO while the second can proceed with or without such addition.     

Oxidation of carbon monoxide on group 11 metal atoms: matrix-isolation infrared spectroscopic and density functional theory study

Laser-ablated Cu, Ag, and Au atoms react with CO and O2 mixture in solid argon to produce carbonyl metal oxides, (O2)Cu(CO)(n) (n = 1, 2), (eta(1)-OO)MCO (M = Ag, Au), OCAuO2CO, and OAuCO, as well as group 11 metal carbonyls and oxides. These carbonyl metal oxides are characterized using infrared spectroscopy on the basis of the results of the isotopic substitution and the CO concentration change. Density functional theory (DFT) calculations have been performed on these molecules. The identifications of these carbonyl metal oxides are confirmed by the good agreement between the experimental and calculated vibrational frequencies, relative absorption intensities, and isotopic shifts. Carbon dioxide is eliminated from these carbonyl metal oxides upon UV irradiation, providing the evidence for the oxidation of carbon monoxide on group 11 metal atoms. The present experiments also reveal that the reactivity of copper toward CO is prior to O2, and the reactivity of silver toward O2 is prior to CO, whereas the reactivity of gold toward CO is comparable to O2.     

Structural and infrared spectroscopic characterization of Co6C(CO)12S2: a high-nuclearity carbido carbonyl cluster spontaneously formed from dicobalt octacarbonyl and carbon disulphide

Co₆C(CO)₁₂S₂ (I) has been isolated in crystalline form from the mixture of more than a dozen of carbonyl products formed when Co₂(CO)₈ reacts at room temperature with CS₂. Crystals of I are monoclinic with space group Cc, and lattice constants a  16.250(5), b  9.413(4), c  16.036(5) Å, β  116.77(4)°. Structure refinement gave R  0.034 for 1974 reflections. The CCo₆S₂ core of the molecule possesses idealized D_3h geometry. It is composed of a Co₆ trigonal prism, enclosing a C atom in the centre, and the triangular faces are capped symmetrically by the two S atoms. The core contains two sorts od CoCo distances: short one (2.432 Å) along the triangular edges, and long ones (2.669 Å) along the lateral edges. The average CoC distance is 1.94 Å, and the average CoS distance 2.192 Å.¹³CO-enriched samples were prepared photochemically and their IR spectra used in the assignment of the CO stretching frequencies. The CO stretching force constant was calculated to be 1670(2) Nm^-1.By the use of ¹³CS₂, I has also been obtained in a selectively carbido-¹³C-labelled form. The vibrational frequencies of the carbide atom were observed, and that at 819 cm^-1 (¹³C: 790 cm^-1) assigned to the species

, and that at 548 cm^-1 (¹³C: 535.5 cm^-1) to species E′. For the Co-C(carbide) force constant a value of 155 Nm^-1 was calculated. The cobalt—sulphur stretching frequencies were found at 309 cm^-1 (

) and 239 cm^-1 (E′). The CoS stretching force constant, 78 Nm^-1, is considerably lower than that obtained for SCo₃-(CO)₉, viz. 112 Nm^-1.     

Determination of carbon monoxide in metal carbonyl complexes-II: development of a volumetric finish

The method previously described for the determination of carbon monoxide in metal carbonyl complexes has been modified to provide an accurate volumetric finish.     

FTIR spectroscopic study on the interaction between a fluoroionophore and metal ions.

A fluoroionophore sensor, N-[4-(1-pyrene)butyroyl]-L-tryptophan (PLT), has been reported. It can distinguish lead ion from other 12 metal ions via forming a pyrene dimer and it exhibits a very high sensitivity (0.15 microM) in aqueous solution (Chem. Commun., 2006, 2702). When the indole moiety in PLT was changed to benzene, in forming a new fluoroionophore of N-[4-(1-pyrene)butyroyl]-L-phenylalanine (PLP), it could not form a pyrene dimer in response to Pb(2+) in water. The present study describes the spectroscopic clarification of the intrinsic differences of the binding model between PLP and PLT in binding with Pb(2+). The model shows identical chelating bidentate coordination between COO(-) and Pb(2+) both in PLP-Pb and PLT-Pb; however, there is no indication of the interaction between the phenyl ring and the metal ion or the hydrogen bonding between amide groups in PLP-Pb. These differences in the binding model between PLP-Pb and PLT-Pb illustrate that the indole ring in PLT appears to play a crucial role in the high selectivity and sensitivity of PLT to lead(II) ion.     

Catalytic carbonylation of propylene with carbon monoxide under pressure in the presence of a palladium-zeolite catalyst

Conclusions Ultrahigh-silica zeolites containing palladium manifest a high activity and selectivity in the carbonylation of propylene.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 10, pp. 2304–2306, October, 1982.     

Helix-loop-helix peptides as scaffolds for the construction of bridged metal assemblies in proteins: the spectroscopic A-cluster structure in carbon monoxide dehydrogenase

Four helix-loop-helix 63mer peptides were designed and synthesized in order to assess the utility of peptides as scaffolds for the stabilization of complex metal sites in proteins. Bridged assembly [Ni(II)-(mu(2)-S.Cys)-Fe(4)S(4)], consistent with spectroscopic information on the A-cluster of carbon monoxide dehydrogenase, was chosen as the target assembly. The peptides consist of two helices with approximately 20 residues connected by a flexible loop containing the ferredoxin consensus sequence Cys-Ile-Ala-Cys-Gly-Ala-Cys to bind the Fe(4)S(4) cluster. A fourth cysteine was positioned to serve as the bridging ligand between the cluster and Ni(II). Three other binding residues were incorporated in appropriate positions to constitute a binding site for Ni(II). One of the peptides was designed with an N(3)S (His(3)Cys) site, and each of the other three with N(2)S(2) (His(2)Cys(2)) sites. A detailed account of the synthesis and characterization of the peptides and their metalloderivatives is presented. The four peptides were synthesized using an Fmoc/t-Bu-based solid-phase strategy, purified by reversed-phase HPLC, and characterized by ES-MS. On the basis of size-exclusion chromatography and circular dichroism spectropolarimetry, these peptides appear to dimerize in solution to form four-helix bundles of high helical contents. Reactions of the peptides with preformed cluster [Fe(4)S(4)(SCH(2)CH(2)OH)(4)](2)(-) and subsequent purification by column chromatography yield a product consistent with the incorporation of one [Fe(4)S(4)](2+) cluster per 63mer, as judged from absorption and M?ssbauer spectra. Addition of a Ni(II) salt to the [Fe(4)S(4)]-peptides results in an apparent equilibrium between free Ni(II) and a peptide-bound nickel form, as established by column chromatography studies. Nickel EXAFS data (Musgrave, K. B.; Laplaza, C. E.; Holm, R. H.; Hedman, B.; Hodgson, K. O. Results to be published.) provide strong evidence that the peptide-bound nickel binds in the desired site in two of the metallopeptides. This work represents the first exploration of peptides as scaffolds for the support of biologically relevant bridged assemblies containing iron-sulfur clusters.     

Interaction of carbon monoxide with Au(111) modified by ion bombardment: a surface spectroscopy study under elevated pressure

Gold based model systems exhibiting the structural versatility of nanoparticle ensembles and being accessible for surface spectroscopic investigations are expected to provide new information about the adsorption of carbon monoxide, a key process influencing the CO oxidation activity of this noble metal in nanoparticulate form. Accordingly, in the present work the interaction of CO is studied with an ion bombardment modified Au(111) surface by means of a combination of photoelectron spectroscopy (XPS and UPS), sum frequency generation vibrational spectroscopy (SFG), and scanning tunneling microscopy (STM). While no adsorption was found on intact Au(111), data collected on the ion bombarded surface at cryogenic temperatures indicated the presence of stable CO adsorbates below 190 K. A quantitative evaluation of the C 1s XPS spectra and the surface morphology explored by STM revealed that the step edge sites created by ion bombardment are responsible for CO adsorption. The identification of the CO binding sites was confirmed by density functional theory (DFT) calculations. Annealing experiments up to room temperature showed that at temperatures above 190 K unstable adsorbates are formed on the surface under dynamic exposure conditions that disappeared immediately when gaseous CO was removed from the system. Spectroscopic data as well as STM records revealed that prolonged CO exposure at higher pressures of up to 1 mbar around room temperature facilitates massive atomic movements on the roughened surface, leading to its strong reordering toward the structure of the intact Au(111) surface, accompanied by the loss of the CO binding capacity.     

Reactions of late lanthanide metal atoms and methanol in solid argon: a matrix isolation infrared spectroscopic and theoretical study

The reactions of laser-ablated late lanthanide atoms and methanol were studied using matrix isolation infrared spectroscopy and electronic structure calculations at the density functional theory level. Both terbium and lutetium atoms react with methanol spontaneously to form the CH(3)OTbH and CH(3)OLuH insertion products, which react further with another methanol molecule to give the Tb(OCH(3))(2) and Lu(OCH(3))(2) products as found previously for uranium. The reactions of Dy through Yb and methanol first produce Ln(CH(3)OH) complexes during sample annealing, which isomerize to the CH(3)OLnH insertion products on visible irradiation. The Ln-H stretching frequencies of the CH(3)OLnH molecules exhibit a unique trend from Tb to Lu, which is also reproduced by theoretical calculations at the B3LYP level of theory. Although the CH(3)LnOH molecules are predicted to be more stable than the O-H bond insertion products, formation of the C-O bond insertion isomers is kinetically prohibited as revealed by calculated potential energy surfaces.     

Basicity of transition metal carbonyl complexes: VIII. An infrared study of the reaction of aluminium chloride with some cyclopentadienyl and arenecarbonyl transition metal complexes

The interaction of cyclopentadienyl and arene derivatives of carbonyl complexes of Group V, VI and VII transition metals with AlCl₃ in benzene and CH₂Cl₂ solutions has been studied by IR spectroscopy.The formation of adducts involving the metal atom or the carbonyl oxygen atom was observed. The reaction path depends on the structure of the complex and on the nature of the solvent. In benzene the adduct formation at the CO ligand is more favourable than in CH₂Cl₂ solution. Introduction of a phosphine ligand in the place of the CO group or introduction of donor substituents into the π-ring increases the basicity of the central metal atom and makes adduct formation at the metal more probable.The basicity of the metal atom in complexes with the same ligands increases with increases of atomic number in the group. CpRe(CO)₂Br₂ forms adducts with AlCl₃ at the bromine atoms ($\text{1}\text{1}$ and $\text{sol1}\text{2}$). For Fe(CO)₄PPh₃ and Fe(CO)₃(PPh₃)₂ complex formation takes place at the iron atom.     

Catalytic deoxygenation of organic compounds by carbon monoxide: III. The reaction under pressure of aromatic nitro compounds in the presence of o-phthalaldehyde

The reaction of o-phthalaldehyde with several aromatic nitro compounds in the presence of carbon monoxide and catalytic quantities of hexarhodium-hexadecacarbonyl eventuated in the formation of the corresponding N-substituted isoindolinone as the major product. A reaction mechanism has been suggested incorporating deoxygenation of the nitro compound by carbon monoxide to a nitrene intermediate and the subsequent interception of the latter by o-phthalaldehyde.     

The formation of a new mixed cobalt rhodium carbonyl from Co2(CO)8 and Rh4(CO)12: Infrared spectroscopic characterization under carbon monoxide pressure

The formation of a new compound, the most characteristic IR absorption bands of which appear at 2007 cm^-1 and 1956 cm^-1, has been in the reaction between Co₂(CO)₈ and Rh₄(CO)₁₂ under carbon monoxide pressure in a hydrocarbon medium. The same compound is also formed either by the reaction of Co₂(CO)₈ with [Rh(CO)₂Cl]₂ or by the reaction of Co₃Rh(CO)₁₂ with carbon monoxide. The new complex has not been isolated in a pure state, but the formula CoRh(CO)₇ is proposed on the basis of the stoichiometry of its formation and its physico-chemical properties. Equilibrium constants and thermo-dynamic parameters for the reaction 2 Co₂(CO)₈ + Rh₄(CO)₁₂  4 CoRh(CO)₇ have been estimated. Possible structures for the new complex are discussed on the basis of its IR spectrum.     

Phase equilibria in polymer/solvent systems. Part V: Thermodynamic theory of the swelling pressure equilibrium of a crosslinked substance with a solvent in various phases

A thermodynamic theory has been developed to define the swelling pressure equilibrium between a homogeneous gel and a pure solvent, where phase transitions of the solvent, such as evaporation and crystallization can occur. It is shown that the equilibrium curve, which describes the temperature dependence of the composition in the gel phase under the condition of a constant swelling pressure, has distinct bends at the transition temperatures. These bends are related to the enthalpies of transition of the pure solvent at the transition temperatures. As a consequence of the phase transition of the solvent the swelling pressure-temperature curve at constant composition of the gel shows a discontinuous behavior at the transition point. Numerical calculations with a modified Flory-Huggins expression, based on results of swelling and deswelling measurements of the system crosslinked PEG/water, are presented.The discussion includes natural systems, which are in the gel state, where water may crystallize in the extracellular space.     

Hydroformylation of deuterated olefins in the presence of cobalt catalysts : II. Experiments at low pressure of carbon monoxide

Complete retention of deuterium is observed during the hydroformylation of deuterated olefins even with a low partial pressure of carbon monoxide. Inter- and intra-molecular redistribution of deuterium does take place, however. An olefin—catalyst complex containing two molecules of olefin is suggested to rationalize the results.     

Importance of entropy in the conformational equilibrium of phenylalanine: a matrix-isolation infrared spectroscopy and density functional theory study

The conformational behavior and infrared spectrum of l-phenylalanine were studied by matrix-isolation infrared spectroscopy and DFT [B3LYP/6-311++G(d,p)] calculations. The fourteen most stable structures were predicted to differ in energy by less than 10 kJ mol(-1), eight of them with abundances higher than 5% at the temperature of evaporation of the compound (423 K). Experimental results suggest that six conformers contribute to the spectrum of the isolated compound, whereas two conformers (IIb(3) and IIIb(3)) relax in matrix to a more stable form (IIb(2)) due to low energy barriers for conformational isomerization (conformational cooling). The two lowest-energy conformers (Ib(1), Ia) differ only in the arrangement of the amino acid group relative to the phenyl ring; they exhibit a relatively strong stabilizing intramolecular hydrogen bond of the O-H...N type and the carboxylic group in the trans configuration (O=C-O-H dihedral angle ca. 180 degrees ). Type II conformers have a weaker H-bond of the N-H...O=C type, but they bear the more favorable cis arrangement of the carboxylic group. Being considerably more flexible, type II conformers are stabilized by entropy and the relative abundances of two conformers of this type (IIb(2) and IIc(1)) are shown to significantly increase with temperature due to entropic stabilization. At 423 K, these conformers are found to be the first and third most abundant species present in the conformational equilibrium, with relative populations of ca. 15% each, whereas their populations could be expected to be only ca. 5% if entropy effects were not taken into consideration. Indeed, phenylalanine can be considered a notable example of a molecule where entropy plays an essential role in determining the relative abundance of the possible low-energy conformational states and then, the thermodynamics of the compound, even at moderate temperatures. Upon UV irradiation (lambda > 235 nm) of the matrix-isolated compound, unimolecular photodecomposition of phenylalanine is observed with production of CO(2) and phenethylamine.     

Determination of the N-methyl stereochemistry in tropane and granatane derivatives in solution: a computational and NMR spectroscopic study

Tropane (8-methyl-8-azabicyclo[3.2.1]octane) and granatane (9-methyl-9-azabicyclo[3.3.1]nonane) derivatives undergo fast N-methyl inversion. The distribution of axial and equatorial N-methyl invertomers of protonated and free amine forms in aqueous and methanol solutions was studied by room and low temperature NMR spectroscopy on tropinone, tropine, granatan-3-one (pseudopelletierine or pseudopelletrierin) and α-granatan-3-ol. Theoretical (DFT) distributions in both gas phase and solutions are also reported. Applicability of the computational model for the studied system was verified by comparison with invertomer distributions inferred from inverse-gated ¹³C NMR experiments. Among the tested functionals, the BH&HLYP/cc-pVDZ method yields the best agreement with experiment. Moreover, accounting for orbital relaxation upon immersion in the solution was found to be of importance in order to properly reproduce observed distributions.     

Enhanced infrared absorption in a comparative study between multi-sensitive and multiresistant bacteria of the genus Klebsiella sp.

We study the infrared spectral profile of bacteria of the genus Klebsiella sp. with respect to sensitivity and resistance. The differentiation between these organisms can properly guide the therapeutic conduct. We processed the samples obtained from the laboratory of Hospital Santos Dumont in a Mac Conckey culture medium. After that, we processed a micromass to provide a thin film for evaluation by FTIR spectroscopy. The pilot study was performed using glass slides and glass slides coated with a copper sheet of 45 μm thickness as support for the samples. After the bibliographical review, we highlight the relationship between the amino acid serine and bacterial resistance in this type of bacteria, which occurs through plasmids. We collected spectra from 50 bacterial strains divided in two groups: 25 sensitive and 25 resistant strains on glass, and 21 sensitive and 21 resistant strains on the copper sheet. We obtained the composition of the samples by evaluating the spectra with multivariate analysis using the second derivative. We concluded that infrared spectroscopy could also be used to identify multiresistant bacteria of the genus Klebsiella sp. by means of the amino acid serine, which can be considered as a marker of resistance found only in multiresistant forms.     

Solvent-induced isotope effects in NMR spectroscopy. A study of hydrogen bonding between the carbonyl group in chalcone and trifluoracetic acid (TFA-d or TFA) in chloroform solution

Splittings, δ_i, were observed for each carbon atom, C_i, of chalcone in spectra obtained from coaxial 5 and 10 mm NMR sample tubes containing solutions equimolar in the concentration of the ketone and of TFA or TFA-d as hydrogen-bond donors, respectively. It was found that a linear expression, δ_i = (K–1)x_HΔ_i+x_Dδ_i(D, H) relates these splittings, δ_i, induced by the isotopic substitution in a hydrogen bond, to the parameter Δ_i, denoting the change in chemical shift for each carbon site in complexed and free ketone, and δ_i(D, H), the solvent-induced isotope effect in a complex. The origin of the phenomenon is briefly discussed. It is also shown that the secondary deuterium isotope effect can give the same information about the form of the potential energy well in the hydrogen-bond as the primary H/D isotopte shifts.