Proton‐bifurcated C—H⋯(O,O) hydrogen bonds in 2,3‐dichloro‐6‐nitro­benzyl­aminium chloride

In the crystal structure of the title salt, C₇H₇Cl₂N₂O₂⁺·Cl⁻, the chloride anions participate in extensive hydrogen bonding with the aminium cations and indirectly link the mol­ecules through multiple N⁺—H⋯Cl⁻ salt bridges. There are two independent mol­ecules in the asymmetric unit, related by a pseudo‐inversion center. The direct inter­molecular coupling is established by C—H⋯O, C—H⋯Cl and C—Cl⋯Cl⁻ inter­actions. A rare three‐center (donor bifurcated) C—H⋯(O,O) hydrogen bond is observed between the methyl­ene and nitro groups, with a side‐on intra­molecular component of closed‐ring type and a head‐on inter­molecular component.     

2,2′‐(Iminodimethylene)bis(1H‐benzimidazolium)(1+) chloride

The title compound, C₁₆H₁₆N₅⁺·Cl⁻ (nbbH⁺·Cl⁻), displays N—H⋯N, N—H⋯Cl and π–π inter­actions in the crystal packing. The Cl⁻ anion is chelated by the nbbH⁺ cation via two N—H⋯Cl hydrogen bonds. Inter‐ion N—H⋯N and N—H⋯Cl hydrogen bonds link ions related by 2₁ screw axes into chains along the c axis. These chains are further linked by glide‐plane operations to generate a three‐dimensional network, which is additionally stabilized by inter­chain π–π inter­actions.     

(R)‐N‐[(R)‐1‐(2‐Hydroxy‐5‐methyl­phenyl)‐2‐phenyl­ethyl]‐2‐methyl‐1‐phenyl­propyl­ammonium chloride

In the title compound, C₂₅H₃₀NO⁺·Cl⁻, the mol­ecules are linked by a combination of inter­molecular N—H⋯Cl and O—H⋯Cl hydrogen bonds and intra­molecular N—H⋯O hydrogen bonds. The absolute configuration of the new stereogenic centre (the C atom adjacent to the N atom on the phenol side) is determined to have an R configuration.     

6‐(2‐Chloro­acetamido)­hexa­noic acid

Crystals of the title compound, C₈H₁₄ClNO₃, belong to the space group Cc and are characterized by an asymmetric unit containing two mol­ecules, both with a twisted conformation. The mol­ecular packing is stabilized by N—H⋯O=C hydrogen bonds between the amide groups of mol­ecules with the same conformation. In addition, hydrogen‐bonded cyclic carboxylic acid dimers are established between mol­ecules with a different conformation. The ClCH₂—CONH bond has a cis conformation in order to favour an intra­molecular Cl⋯HN electrostatic inter­action. Weak intra‐ and inter­molecular CH₂⋯O=C inter­actions are also present.     

A hydrogen‐bonded heterodimer of 1‐(4‐hexyloxyphenyl)pyridin‐4(1H)‐one with 4‐cyano­benzoic acid

The two components of the title heterodimer, C₁₇H₂₁NO₂·C₈H₅NO₂, are linked end‐to‐end via O—H⋯O(=C) and C—H⋯O(=C) hydrogen‐bond inter­actions. Additional lateral C—H⋯O inter­actions link the dimers in a side‐by‐side fashion to produce wide infinite mol­ecular ribbons. Adjacent ribbons are inter­connected viaπ–π stacking and C—H⋯π(arene) inter­actions. This structure represents the first evidence of robust hydrogen‐bond formation between the moieties of pyridin‐4(1H)‐one and benzoic acid.     

4‐(4‐Fluoro‐3‐phenoxy­phen­yl)‐6‐(4‐fluoro­phen­yl)‐2‐oxo‐1,2‐dihydro­pyridine‐3‐carbonitrile and the 6‐(4‐methyl­phen­yl)‐ analogue

The crystal structures of the title compounds, viz. C₂₄H₁₄F₂N₂O₂, (I), and C₂₅H₁₇FN₂O₂, (II), respectively, have been determined in order to unravel the role of an ordered F atom in generating stable supra­molecular assemblies. On changing the substitution from fluorine to a methyl group, C—H⋯F inter­actions are replaced by C—H⋯π inter­actions, revealing the importance of such weak inter­actions when present alongside N—H⋯O and C—H⋯O hydrogen bonds. The dihedral angle between the planes of the 4‐fluoro­phenyl ring and the pyridine ring is 26.8 (1)° in (I), while that between the planes of the 4‐methyl­phenyl and pyridine rings is 29.5 (1)° in (II).     

2‐(2‐Oxazolin‐2‐yl)benzene‐1,4‐diol: X‐ray and density functional theory studies

In the crystal structure of the title compound, C₉H₉NO₃, there are strong intra­molecular O—H⋯N and inter­molecular O—H⋯O hydrogen bonds which, together with weak inter­molecular C—H⋯O hydrogen bonds, lead to the formation of infinite chains of mol­ecules. The calculated inter­molecular hydrogen‐bond energies are −11.3 and −2.7 kJ mol⁻¹, respectively, showing the dominant role of the O—H⋯O hydrogen bonding. A natural bond orbital analysis revealed the electron contribution of the lone pairs of the oxazoline N and O atoms, and of the two hydr­oxy O atoms, to the order of the relevant bonds.     

Dichloro­(O‐ethyl 3‐methyl­pyridine‐2‐carboximidic acid‐κ2N,N′)copper(II)

In the title compound, [CuCl₂(C₉H₁₂N₂O)], the Cu^II atom is coordinated by two Cl⁻ anions and two N atoms of one O‐ethyl 3‐methyl­pyridine‐2‐carboximidic acid mol­ecule in a slightly distorted square‐planar geometry, with Cu—N distances of 2.0483 (17) and 1.9404 (18) Å, and Cu—Cl distances of 2.2805 (10) and 2.2275 (14) Å. In addition, each Cu^II atom is connected by one Cl⁻ anion and the Cu^II atom from a neighbouring mol­ecule, with Cu⋯Cl and Cu⋯Cu distances of 2.9098 (13) and 3.4022 (12) Å, respectively, and, therefore, a centrosymmetric dimer is formed. Adjacent mol­ecular dimers are connected by π–π stacking inter­actions between pyridine rings to form a zigzag mol­ecular chain. The mol­ecular chains are also enforced by N—H⋯Cl and C—H⋯Cl inter­actions.     

1‐(4‐Chloro­phenyl)‐2‐methyl‐4‐nitro‐5‐(1‐piperidyl)‐1H‐imidazole

The only specific inter­actions that influence the crystal packing of the title compound, C₁₅H₁₇ClN₄O₂, are weak C—H⋯N and C—H⋯Cl hydrogen bonds, even though there is a possibility of, for example, π–π stacking or halogen bonding. The dihedral angle between the mean planes of the imidazole and benzene rings is 59.82 (5)°. The length of the C—N bond connecting the imidazole and piperidine fragments is correlated with the degree of pyramidalization of the piperidine N atom.     

1‐Acetyl‐3‐ferrocenyl‐5‐methyl‐1H‐pyrazole and 1‐acetyl‐5‐ferrocenyl‐3‐(2‐pyrid­yl)‐1H‐pyrazole

Mol­ecules of 1‐acetyl‐3‐ferrocenyl‐5‐methyl‐1H‐pyrazole, [Fe(C₅H₅)(C₁₁H₁₁N₂O)], form a centrosymmetric dimer generated by a combination of one C—H⋯π(pyrazole) and one C—H⋯π(cyclo­penta­dienyl) inter­action. The dimers are linked by C—H⋯π inter­actions, involving the pyrazole rings as acceptors, into layers parallel to (10). Mol­ecules of 1‐acetyl‐5‐ferrocenyl‐3‐(2‐pyrid­yl)‐1H‐pyrazole, [Fe(C₅H₅)(C₁₅H₁₂N₃O)], are linked by C—H⋯O inter­actions into a chain running in the [010] direction. Two chains of this type passing through each unit cell are connected by O⋯π(pyridyl) inter­actions into an [010] double chain.     

Constructor graph description of hydrogen bonding in a supra­molecular assembly of N,N′‐bis­(2‐hydr­oxy‐1‐methyl­ethyl)phthalamide

Hydrogen bonds of four types (N—H⋯O=C, N—H⋯OH, O—H⋯O=C and O—H⋯OH) connect mol­ecules of the title compound, C₁₄H₂₀N₂O₄, in the crystal into sheets folded into a zigzag pattern. The inter­molecular inter­actions are discussed in terms of the first‐ through fourth‐level graph sets, and a constructor graph helps visualize the supra­molecular assembly.     

1‐((E)‐{(1R,2R)‐2‐[(E)‐(2‐Hydr­oxy‐1‐naphth­yl)methyl­eneamino]cyclo­hexyl}iminiometh­yl)naphthalen‐2‐olate: a Schiff base compound having both OH and NH character

The title Schiff base compound, C₂₈H₂₆N₂O₂, possesses both OH and NH tautomeric character in its mol­ecular structure. While the OH side of the compound is described as an inter­mediate state, its NH side adopts a predominantly zwitterionic form. The mol­ecular structure of the compound is stabilized by both N⁺—H⋯O⁻ and O—H⋯N intra­molecular hydrogen bonds. There are two weak C—H⋯O hydrogen bonds leading to polymeric chains of topology C(5) and C(13) running along the b axis of the unit cell. In addition, inter­molecular C—H⋯π inter­actions serve to stabilize the extended structure.     

{4(S)‐(Piperidin‐1‐ylcarbonyl)‐4‐[3‐(trifluoro­methyl)phenylsulfon­amido]butyl}guanidinium chloride: a model of a graftable thrombin inhibitor

In the title compound, C₁₈H₂₇F₃N₅O₃S⁺·Cl⁻, the guanidine group forms N—H⋯Cl hydrogen bonds, with four N⋯Cl distances in the range 3.164 (3)–3.337 (4) Å. In the crystal packing, the cations are further linked by N—H⋯O and C—H⋯O inter­actions. The structure is compared with that of argatroban complexed with thrombin and is the subject of docking studies in the active site of thrombin.     

6‐Phenyl‐3‐(4‐pyrid­yl)‐1,2,4‐triazolo[3,4‐b][1,3,4]thia­diazole

The title compound, C₁₄H₉N₅S, has been synthesized and characterized both spectroscopically and structurally. The triazolo–thia­diazole system, the pyridine ring and the phenyl ring are all planar. The plane of the triazolo–thia­diazole system forms dihedral angles of 1.53 (13) and 7.55 (12)° with the planes of the pyridine and phenyl rings, respectively. In the mol­ecule, there are two intra­molecular inter­actions of types C—H⋯N and C—H⋯S. Inter­molecular C—H⋯N inter­actions involving a phenyl CH group and a triazole N atom lead to the formation of a one‐dimensional chain. In the crystal structure, two types of π–π inter­actions affect the packing of the mol­ecules. In addition, there are inter­molecular non‐bonded S⋯N contacts of 2.870 (2) Å, which may cause steric hindrance.     

Bis(6‐thioxo‐1,6‐dihydro­purinium) tetra­chloro­zincate(II)

The title salt, (C₅H₅N₄S)₂[ZnCl₄], consists of two 6‐thioxo‐1,6‐dihydro­purinium (6mpH₂⁺) cations (A and B) and a tetra­chloro­zincate anion, which are held together by N—H⋯Cl and C—H⋯Cl inter­actions. There is an anion–π inter­action between one Cl atom of the [ZnCl₄]⁻ anion and the pyrimidine ring of the 6mpH₂⁺(B) cation. Inter­molecular π–π stacking inter­actions allow 6mpH₂⁺(A) cations to form anti­parallel pairs. One inter­esting structural feature is the double N—H⋯N inter­molecular hydrogen bonds between two 6mpH₂⁺(A) cations. This kind of inter­action, mimicking that of natural nucleobases, can be very valuable in designing new therapeutic purine derivatives.     

1‐Benzyl‐3,3‐dichloro‐1H‐indol‐2(3H)‐one

The title compound, C₁₅H₁₁Cl₂NO, was synthesized from N‐­benzyl­isatin. The compound crystallizes as stacks of mol­ecules running down the c axis. Mol­ecules within each of these stacks inter­act with each other through π–π and C—H⋯π inter­actions, and inter­act with neighbouring stacks through C—H⋯O inter­actions.     

Salicylaldehyde 4,4′‐(hexane‐1,6‐di­yl)­thio­semicarbazone

The title compound, C₁₄H₁₉N₃OS, is in the thio­keto form, with the thione S and hydrazine N atoms cis with respect to each other so that the S atom is involved in inter‐ and intra­molecular hydrogen bonds simultaneously. Inter­molecular C—H⋯S and C—H⋯O hydrogen bonds result in one‐dimensional polymeric chains of mol­ecules along the a axis. A weak C—H⋯π ring inter­action binds the polymeric chains together.     

Bromo­(η4‐cyclo­octa‐1,5‐diene)[1‐(2,3,4,5,6‐penta­fluoro­benz­yl)‐3‐(2,4,6‐trimethyl­benz­yl)benzimidazol‐2‐yl­idene]rhodium(I)

The title complex, [RhBr(C₈H₁₂)(C₂₄H₁₉F₅N₂)], has a distorted pseudo‐square‐planar geometry. The Rh—C bond distance between the N‐heterocyclic ligand and the metal atom is 2.022 (3) Å. The angle between the carbene heterocycle and the coordination plane is 75.60 (11)°. It is shown that the average Rh—C(cyclo­octa­diene) distance is linearly dependent on the Rh—C(imidazole) distance in this type of compound. The crystal structure contains one intra­molecular and two inter­molecular types of C—H⋯F inter­actions, as well as one type of π–π stacking inter­action.     

N‐(2,4‐Dimethoxy­benzyl­idene­amino)­guanidinium dihydrogenphosphate

In the asymmetric unit of the title compound, C₁₀H₁₅N₄O₂⁺·H₂PO₄⁻, there are two protonated amino­guanidinium cations and two dihydrogenphosphate anions. The positive charge on the protonated amidine group is delocalized over the three C—N bonds in a manner similar to that found in guanidinium salts. The amino­guanidinium cations are found to be the E‐isomer structures. Intra­molecular inter­actions of the N—H⋯N type are observed, leading to the formation of five‐membered rings. Extensive networks of O—H⋯O, N—H⋯O and C—H⋯O hydrogen bonds stabilize the three‐dimensional network. In the crystal structure, π–π inter­actions between the benzene rings, with a distance of 3.778 (2) Å between the ring centroids, also affect the packing of the mol­ecules.     

1‐(1‐Amino‐4‐bromo‐9,10‐dioxo‐9,10‐dihydro­anthracen‐2‐ylcarbon­yl)‐1,3‐dicyclo­hexyl­urea

In the title compound, C₂₈H₃₀BrN₃O₄, the mol­ecules are linked by C—H⋯Br and N—H⋯O hydrogen bonds into one‐dimensional chains, which are arranged into a three‐dimensional network through a combination of C—H⋯O hydrogen bonds and two kinds of π–π inter­actions between the benzene rings of the anthraquinone units.