Hydrogen bonding and π–π inter­actions in a laminar structure: benzene‐1,3‐dicarboxylic acid–4‐methyl­pyridine (1/2)

The title complex, C₈H₆O₄·2C₆H₇N, consists of two crystallographically independent 1:2 clusters of benzene‐1,3‐­dicarboxylic acid and 4‐methyl­pyridine. Each cluster, the components of which are linked by O—H⋯N hydrogen bonds, is almost planar by alignment of C—H⋯O hydrogen bonds. Herring‐bone ribbons of clusters are formed by other C—H⋯O hydrogen bonds, and these ribbons are further packed to form a laminar structure by π–π inter­actions.     

Hydro­gen‐bonding patterns in 2‐amino‐4,6‐di­methyl­pyrimidinium hydrogen sulfate

In the title compound, C₆H₁₀N₃⁺·HSO₄⁻, the asymmetric unit consists of a hydrogen sulfate anion and a 2‐amino‐4,6‐di­methyl­pyrimidinium cation. The hydrogen sulfate anions self‐assemble through O—H⋯O hydrogen bonds, forming supramolecular chains along the b axis, while the organic cations form base pairs via N—H⋯N hydrogen bonds. The amino­pyrimidinium cations join to the sulfate anions via a pair of hydrogen bonds donated from the pyrimidinium protonation site and from the exo amine group cis to the protonated site.     

Hydrogen‐bonding patterns in six derivatives of 2,4‐dimethyl­pyrrole

The crystal and mol­ecular structures of 4‐ethyl‐3,5‐dimethyl­pyrrole‐2‐carbaldehyde, C₁₀H₁₅NO, (I), benzyl 3,5‐dimethyl­pyrrole‐2‐carboxyl­ate, C₁₄H₁₅NO₂, (II), benzyl 4‐acetyl‐3,5‐dimethyl­pyrrole‐2‐carboxyl­ate, C₁₆H₁₇NO₃, (III), dimethyl 3,5‐dimethyl­pyrrole‐2,4‐dicarboxyl­ate, C₁₀H₁₃NO₄, (IV), 4‐ethyl‐3,5‐dimethyl‐2‐(p‐tos­ylacet­yl)pyrrole, C₁₇H₂₁NO₃S, (V), and ethyl 4‐(2‐ethoxy­carbonyl‐2‐hydroxy­acrylo­yl)‐3,5‐dimethyl­pyrrole‐2‐carboxyl­ate, C₁₅H₁₉NO₆, (VI), were determined at 130 K. Compounds (I), (II), (IV), (V) and (VI) form hydrogen‐bonded dimers [N—H⋯O=C = 1.97 (2)–2.03 (3) Å]. Four dimers, viz. (I) and (IV)–(VI), have inversion symmetry, while the dimer of (II) has twofold symmetry. Only (III) forms polymeric chains involving hydrogen bonds between the pyrrole H atom and the acetyl carbonyl group [H⋯O = 1.97 (2) Å] and is further stabilized by CH₃⋯O inter­actions (C—H⋯O = 2.28–2.49 Å). Compound (VI) was found to occur as the enol ether in the crystal.     

C—H⋯O,C—H⋯π and π–π inter­actions in three benzofuran‐2‐yl ketone derivatives

The mol­ecules of 2‐benzoyl‐1‐benzofuran, C₁₅H₁₀O₂, (I), inter­act through double C—H⋯O hydrogen bonds, forming dimers that are further linked by C—H⋯O, C—H⋯π and π–π inter­actions, resulting in a three‐dimensional supramolecular network. The dihedral angle between the benzo­yl and benzofuran fragments in (I) is 46.15 (3)°. The mol­ecules of bis­(5‐bromo‐1‐benzofuran‐2‐yl) ketone, C₁₇H₈Br₂O₃, (II), exhibit C₂ symmetry, with the carbon­yl group (C=O) lying along the twofold rotation axis, and are linked by a combination of C—H⋯O and C—H⋯π inter­actions and Br⋯Br contacts to form sheets. The stability of the mol­ecular packing in 3‐mesit­yl‐3‐methyl­cyclo­but­yl 3‐methyl­naphtho[1,2‐b]furan‐2‐yl ketone, C₂₈H₂₈O₂, (III), arises from C—H⋯π and π–π stacking inter­actions. The fused naphthofuran moiety in (III) is essentially planar and makes a dihedral angle of 81.61 (3)° with the mean plane of the trimethyl­benzene ring.     

cis‐Diaqua­[(E)‐2‐(2‐oxidobenzyl­idene­amino‐κ2N,O)­benzoato‐κO]copper(II): tubes built from O—H⋯O hydrogen‐bonding, π–π and C—H⋯π inter­actions

In the title compound, [Cu(C₁₄H₉NO₃)(H₂O)₂], which crystallizes with Z = 18 in the space group R, pairs of complexes are linked into dimers by three O—H⋯O hydrogen bonds. Strong O—H⋯O hydrogen bonds link the dimers into one‐dimensional chains that further assemble into tubes through π–π and C—H⋯π inter­actions.     

cis‐Dichloro­[tris­(2‐benzimidazolylmethyl)amine]iron(III) chloride ethanol dihydrate: hydrogen bonding changing the arrangement of tapes built from π–π and C—H⋯π inter­actions

The title compound, [FeCl₂(C₂₄H₂₁N₇)]Cl·C₂H₅OH·2H₂O, comprises an [FeCl₂(C₂₄H₂₁N₇)]⁺ cation, a Cl⁻ anion, an ethanol mol­ecule and two water mol­ecules. The cations are linked by π–π and C—H⋯π inter­actions into one‐dimensional tapes, and hydrogen bonding between the cations, Cl⁻ anions, and ethanol and water mol­ecules links these tapes into a three‐dimensional network.     

A novel potent non‐nucleoside reverse transcriptase inhibitor acyl­thio­carbamate derivative with extensive intra­molecular π–π inter­actions

In the crystal structure of the novel acyl­thio­carbamate derivative O‐[2‐(1,3‐dioxo‐2,3‐dihydro‐1H‐isoindol‐2‐yl)­ethyl] N‐(4‐methyl­phenyl)‐N‐(3‐nitro­benzoyl)thio­carbamate, C₂₅H₁₉N₃O₆S, intra‐ and inter­molecular π–π inter­actions occur between the phthalimide and N‐benzoyl moieties. The partial atomic charges, calculated by ab initio methods, are consistent with the observed structure.     

Hydrogen‐Bonded Organic Aromatic Frameworks for Ultralong Phosphorescence by Intralayer π–π Interactions

Ultralong organic phosphorescence (UOP) based on metal‐free porous materials is rarely reported owing to rapid nonradiative transition under ambient conditions. In this study, hydrogen‐bonded organic aromatic frameworks (HOAFs) with different pore sizes were constructed through strong intralayer π–π interactions to enable ultralong phosphorescence in metal‐free porous materials under ambient conditions for the first time. Impressively, yellow UOP with a lifetime of 79.8 ms observed for PhTCz‐1 lasted for several seconds upon ceasing the excitation. For PhTCz‐2 and PhTCz‐3, on account of oxygen‐dependent phosphorescence quenching, UOP could only be visualized in N₂, thus demonstrating the potential of phosphorescent porous materials for oxygen sensing. This result not only outlines a principle for the design of new HOFs with high thermal stability, but also expands the scope of metal‐free luminescent materials with the property of UOP.     

Hydrogen bonding and π–π stacking in 6‐hydroxy­biochanin A monohydrate

In the lattice of the title compound (systematic name: 5,6,7‐trihydroxy‐4′‐meth­oxy­isoflavone monohydrate), C₁₆H₁₂O₆·H₂O, the isoflavone mol­ecules are linked into chains through R₄³(17) motifs composed via O—H⋯O and C—H⋯O hydrogen bonds. Centrosymmetric R₄²(14) motifs assemble the chains into sheets. Hydrogen‐bonding and aromatic π–π stacking inter­actions lead to the formation of a three‐dimensional network structure.     

Comparison of halogen bonding and van der Waals and π–π interactions in 4,5‐dibromo‐2‐hexyloxyphenol

The title compound, C₁₂H₁₆BrO₂, is an interesting case of a simple organic molecule making use of five different types of intra‐ and intermolecular interactions (viz. conventional and nonconventional hydrogen bonds, and π–π, Br...Br and Br...O contacts), all of them relevant in the molecular and crystal structure geometry. The molecules are strictly planar, with an intramolecular O—H...O hydrogen bond, and associate into two‐dimensional structures parallel to (01) through two different types of halogen bonding. The planar structures, in turn, stack parallel to each other interlinked by C—H...π and π–π contacts. Also discussed are the relevant structural features leading to the rather low melting point of the compound.     

Hydrogen‐bonded supramolecular motifs in 2‐amino‐4,6‐dimethoxypyrimidinium picrate and pyrimethaminium picrate dimethyl sulfoxide solvate

In the crystal structures of 2‐amino‐4,6‐dimethoxypyrimidinium 2,4,6‐trinitrophenolate (picrate), C₆H₁₀N₃O₂⁺·C₆H₂N₃O₇⁻, (I), and 2,4‐diamino‐5‐(4‐chlorophenyl)‐6‐ethylpyrimidin‐1‐ium (pyrimethaminium or PMN) picrate dimethyl sulfoxide solvate, C₁₂H₁₄ClN₄⁺·C₆H₂N₃O₇⁻·C₂H₆OS, (II), the 2‐amino‐4,6‐dimethoxypyrimidine and PMN cations are protonated at one of the pyrimidine N atoms. The picrate anion interacts with the protonated cations through bifurcated N—H...O hydrogen bonds, forming R₂¹(6) and R₁²(6) ring motifs. In (I), Z′ = 2. In (II), two inversion‐related PMN cations are connected through a pair of N—H...N hydrogen bonds involving the 4‐amino group and the uncharged N atom of the pyrimidine ring, forming a cyclic hydrogen‐bonded R₂²(8) motif. In addition to the pairing, the O atom of the dimethyl sulfoxide solvent molecule bridges the 2‐amino and 4‐amino groups on both sides of the paired bases, resulting in a self‐complementary …DADA… array of quadruple hydrogen‐bonding patterns.     

Three Dicyanidometallate(I)‐based Complexes Incorporating Hydrogen‐bonding, π–π Packing and d10–d10 Interactions with Auxiliary 2,2′‐Bipyridyl‐like Ligands

To investigate the influence of the non‐covalent interactions, such as hydrogen‐bonding, π–π packing and d¹⁰–d¹⁰ interactions in the supramolecular motifs, three cyanido‐bridged heterobimetallic discrete complexes {Mn(bipy)₂(H₂O)[Ag(CN)₂]}[Ag(CN)₂] ( 1 ), {Mn(phen)₂(H₂O)[Au(CN)₂]}₂[Au(CN)₂]₂ · 4H₂O ( 2 ), and {Cd(bipy)₂(H₂O)[Au(CN)₂]}[Au(CN)₂] ( 3 ) (bipy = 2,2′‐bipyridine, and phen = 1,10‐phenanthroline), which are based on dicyanidometallate(I) groups with 1:2 stoichiometry of metal ions and 2,2′‐bipyridyl‐like co‐ligands were synthesized and structurally characterized. In compound 1 , hydrogen bonding and π–π interactions governed the supramolecular contacts. In compound 2 , the incorporation of aurophilic, hydrogen bonding and π–π interactions result in a 3D supramolecular network. In compound 3 , hydrogen bonding and π–π stacking interactions result in a 2D supramolecular layer. In the three complexes, hydrogen‐bonding, π–π packing and/or d¹⁰–d¹⁰ interactions can play important roles in increasing the dimensionality of supramolecular assemblies.     

Hydrogen bonding in nitroaniline analogues: hydrogen‐bonded sheets in 2‐amino‐4,6‐dimethoxy‐5‐nitropyrimidine and π‐stacked hydrogen‐bonded sheets in 4‐amino‐2,6‐dimethoxy‐5‐nitropyrimidine

In 2‐amino‐4,6‐di­methoxy‐5‐nitro­pyrimidine, C₆H₈N₄O₄, the mol­ecules are linked by one N—H⋯N and one N—H⋯O hydrogen bond to form sheets built from alternating R(8) and R(32) rings. In isomeric 4‐amino‐2,6‐di­methoxy‐5‐nitro­pyrimidine, C₆H₈N₄O₄, which crystallizes with Z′ = 2 in P, the two independent mol­ecules are linked into a dimer by two independent N—H⋯N hydrogen bonds. These dimers are linked into sheets by a combination of two‐centre C—H⋯O and three‐centre C—H⋯(O)₂ hydrogen bonds, and the sheets are further linked by two independent aromatic π–π‐stacking interactions to form a three‐dimensional structure.     

Hydrogen‐bonding and π–π stacking interactions in aquachloridobis(1,10‐phenanthroline)cobalt(II) chloride dichloridobis(1,10‐phenanthroline)cobalt(II) hexahydrate

The title compound, [CoCl(C₁₂H₈N₂)₂(H₂O)]Cl·[CoCl₂(C₁₂H₈N₂)₂]·6H₂O, is the first example of a new 1:1 cocrystal of the octahedral [CoCl₂(phen)₂] and [CoCl(phen)₂(H₂O)]⁺·Cl⁻ complexes (phen is 1,10‐phenanthroline). The latter form heterochiral dimers held by strong π–π stacking interactions via their phenathroline ligands, which confirms that π stacking is an important and reliable synthon in supramolecular design. In addition, the crystal structure is networked by H₂O...H₂O, H₂O...Cl⁻ and H₂O...Cl hydrogen bonds, which interconnect the different units of the cobalt complexes.     

Hydro­gen bonding and π–π stacking in di­methyl­genistein

The title compound, 5‐hydroxy‐4′,7‐di­methoxy­isoflavone, C₁₇H₁₄O₅, is composed of a benzo­pyran­one moiety, a phenyl moiety and two methoxy groups. The benzo­pyran­one ring is not coplanar with the phenyl ring, the dihedral angle between them being 56.28 (3)°. The two methoxy groups are nearly coplanar with their corresponding rings, having C—C—O—C torsion angles of 2.9 (2) and 5.9 (2)°. The mol­ecules are linked by C—H·O hydrogen bonds into sheets containing classical centrosymmetric (8) rings. The sheets are further linked by aromatic π–π stacking interactions and C—H·O hydrogen bonds into a supramolecular structure.     

Theoretical Studies on the Hydrogen‐bonding and π‐Stacking Interactions in the m‐Nisoldipine Polymorphism Dimers

The intermolecular interactions in the dimers of m‐nisoldipine polymorphism were studied by B3LYP calculations and quantum theory of "atoms in molecules" (QTAIM) studies. Four geometries of dimers were obtained: dimer I (a‐dimer, O···H? N), dimer II (b‐dimer, O···H? N), dimer III (b‐dimer, π‐stacking‐c), and dimer IV (b‐dimer, π‐stacking‐p). The interaction energies of the four dimers are along the sequence of II>I>III>IV. The intermolecular distance of the interactions follows the order: I (O···H? N)II>III>IV, and the electrostatic character decreases along the sequence: I>II>III>IV.     

Hydrogen bonding in 2‐amino‐4,6‐dimethoxypyrimidine, 2‐benzylamino‐4,6‐bis(benzyloxy)pyrimidine and 2‐amino‐4,6‐bis(N‐pyrrolidino)pyrimidine: chains of fused rings and a centrosymmetric dimer

Molecules of 2‐amino‐4,6‐di­methoxy­pyrimidine, C₆H₉N₃O₂, (I), are linked by two N—H?N hydrogen bonds [H?N 2.23 and 2.50 Å, N?N 3.106 (2) and 3.261 (2) Å, and N—H?N 171 and 145°] into a chain of fused rings, where alternate rings are generated by centres of inversion and twofold rotation axes. Adjacent chains are linked by aromatic π–π‐stacking interactions to form a three‐dimensional framework. In 2‐­benzylamino‐4,6‐bis(benzyloxy)pyrimidine, C₂₅H₂₃N₃O₂, (II), the mol­ecules are linked into centrosymmetric R(8) dimers by paired N—H?N hydrogen bonds [H?N 2.13 Å, N?N 2.997 (2) Å and N—H?N 170°]. Molecules of 2‐amino‐4,6‐bis(N‐pyrrolidino)­pyrimidine, C₁₂H₁₉N₅, (III), are linked by two N—H?N hydrogen bonds [H?N 2.34 and 2.38 Å, N?N 3.186 (2) and 3.254 (2) Å, and N—H?N 163 and 170°] into a chain of fused rings similar to that in (I).     

Bis(2‐amino‐3,5‐dibromo‐4,6‐dimethyl­pyridinium) hexa­bromido­stannate(IV)

In the title compound, (C₇H₉Br₂N₂)₂[SnBr₆], the cations and centrosymmetric anions are stacked in alternating layers that show no significant inter­molecular inter­actions within each stack. Extensive cation⋯[SnBr₆]²⁻ inter­actions are found, represented by short Br⋯Br inter­actions, along with different Br⋯HN (pyridine and amine) and weaker Br⋯HCH₂ hydrogen‐bonding motifs.     

Controllable assembly of a three‐dimensional metal–organic supramolecular framework displaying hydrogen‐bonding and π–π stacking interactions

The complex poly[[aqua(μ₂‐phthalato‐κ²O¹:O²){μ₃‐2‐[3‐(pyridin‐2‐yl)‐1H‐pyrazol‐1‐yl]acetato‐κ⁴N²,N³:O:O′}{μ₂‐2‐[3‐(pyridin‐2‐yl)‐1H‐pyrazol‐1‐yl]acetato‐κ³N²,N³:O}dizinc(II)] dihydrate], {[Zn₂(C₁₀H₈N₃O₂)₂(C₈H₄O₄)(H₂O)]·2H₂O}_n, has been prepared by solvothermal reaction of 2‐[3‐(pyridin‐2‐yl)‐1H‐pyrazol‐1‐yl]acetonitrile (PPAN) with zinc(II). Under hydrothermal conditions, PPAN is hydrolyzed to 2‐[3‐(pyridin‐2‐yl)‐1H‐pyrazol‐1‐yl]acetate (PPAA⁻). The structure determination reveals that the complex is a one‐dimensional double chain containing cationic [Zn₄(PPAA)₄]⁴⁺ structural units, which are further extended by bridging phthalate ligands. The one‐dimensional chains are extended into a three‐dimensional supramolecular architecture via hydrogen‐bonding and π–π stacking interactions.