Amarisolide monohydrate,a 2‐(β‐glu­cosyl)­neoclerodane

The absolute configuration of the neoclerodane glycoside amarisolide, presented here as the monohydrate, C₂₆H₃₆O₉·H₂O, has been determined by association with the known configuration of the glucose moiety. Its structure was established as 2β‐(O‐β‐d ‐gluco­pyran­osyl)­neocleroda‐3,13(16),14‐trien‐15,16‐epoxy‐18,19‐olide. Extensive hydrogen bonding among the hydroxyl groups of the sugar moiety forms layers which are interconnected by water mol­ecules.     

A new estra‐1,3,5(10)‐triene‐3,17β‐diol solvate: estradiol–methanol–water (3/2/1)

The title solvate of the steroid 17β‐estradiol (E₂) with methanol and water, C₁₈H₂₄O₂·0.67CH₄O·0.33H₂O, is the first E₂ derivative to contain three crystallographically independent mol­ecules in the asymmetric unit. The three steroid mol­ecules, along with two methanol mol­ecules and a water mol­ecule, create a three‐dimensional hydrogen‐bonded system. Three‐sided columns are formed, with the estradiol mol­ecules aligned lengthwise parallel to (101), and joined by solvent mol­ecules at both hydro­philic ends. The three estradiol mol­ecules differ slightly in their ring‐bowing angles, i.e. the angle between the mean plane of the A ring and that of the BCD ring; this angle ranges from 7.1 to 12.2°.     

Cyclo(l‐leucyl‐α,β‐dehydro­phenyl­alanine): the first diketopiperazine containing an α,β‐dehydro­phenyl­alanine residue

The title compound (systematic name: 3‐benzyl­idene‐6‐iso­butyl­piperazine‐2,5‐dione), C₁₅H₁₈N₂O₂, an α,β‐dehydro­phenyl­alanine containing diketopiperazine, crystallizes in the space group P1 with two mol­ecules in the asymmetric unit arranged antiparallel to one another. The α,β‐dehydro­phenyl­alanine (ΔPhe) residue in this cyclic peptide retains its planarity but deviates from the standard conformations observed in its linear analogues. Each type of mol­ecule forms a linear chain with mol­ecules of the same type via pairwise N—H⋯O hydrogen bonds, while weaker C—H⋯O inter­actions link the chains together to form a three‐dimensional network.     

Solid‐state transformation of 4,2′‐an­hydro‐5‐(β‐d‐arabino­furan­osyl)­uracil dihydrate to 4,2′‐an­hydro‐5‐(β‐d‐arabino­furan­osyl)­uracil mono­hydrate

Crystals of 4,2′‐an­hydro‐5‐(β‐d ‐arabino­furan­osyl)­uracil, (I), obtained from an aqueous solution, were characterized as the dihydrate, C₉H₁₀N₂O₅·2H₂O, (Ia). In air, these crystals slowly transform to the mono­hydrate, C₉H₁₀N₂O₅·H₂O, (Ib), but remain crystalline. The solid‐state transformation proceeds with the loss of one water mol­ecule and a rearrangement of hydrogen‐bonded layers of mol­ecules. The furan­ose ring in (I) has an approximate C4′‐exo,O4′‐endo twist conformation. The central five‐membered ring is slightly puckered. The uracil group is planar within experimental uncertainty.     

tert‐Butyl (3S,6R,9R)‐(5‐oxo‐3‐{[1(R)‐phenyl­ethyl]­carbamoyl}‐1,2,3,5,6,7,8,8a‐octa­hydro­indolizin‐6‐yl)­carbamate monohydrate at 95 K

The asymmetric unit of the title compound, C₂₂H₃₁N₃O₄·H₂O, incorporates one water mol­ecule, which is hydrogen bonded to the 3‐oxo O atom of the indolizidinone system. The two rings of the peptidomimetic mol­ecule are trans‐fused, with the six‐membered ring having a slightly distorted half‐chair conformation and the five‐membered ring having a perfect envelope conformation. The structure is stabilized by intermolecular O—H?O interactions between the water and adjacent peptide mol­ecules, and by N—H?O interactions between the peptide mol­ecules, which link the mol­ecules into infinite chains.     

3β,7α,12α‐Tri­formyl­oxy‐24‐nor‐5β‐chol‐22‐ene

The title compound, alternatively called 24‐nor‐5β‐chol‐22‐ene‐3β,7α,12α‐triyl triformate, C₂₆H₃₈O₆, has a cis junction between two of the six‐membered rings. All three of the six‐membered rings have chair conformations that are slightly flattened and the five‐membered ring has a 13β,14α‐half‐chair conformation. The 3β, 7α and 12α ring substituents are axial and the 17β group is equatorial. The 3β‐formyl­oxy group is involved in one weak intermol­ecular C—H⋯O bond, which links the mol­ecules into dimers in a head‐to‐head fashion.     

4‐Acetamido‐3,3,5,5‐[2H4]‐2,2,6,6‐tetra­([2H3]methyl)piperidin‐1‐yloxyl 0.33‐hydrate

The asymmetric unit of the title compound, C₁₁H₅D₁₆N₂O₂·0.33H₂O, is formed by three crystallographically independent piperidin‐1‐yloxyl mol­ecules and a mol­ecule of water. The mol­ecules are crosslinked by nine hydrogen bonds into layers parallel with the ac plane. The water mol­ecule contributes to the stability of the low‐symmetry arrangement by four hydrogen bonds.     

4‐Oxo­cyclo­hexane­carboxyl­ic acid: hydrogen bonding in the monohydrate of a δ‐keto acid

The title monohydrate, C₇H₁₀O₃·H₂O, aggregates as a complex hydrogen‐bonding network, in which the water mol­ecule accepts a hydrogen bond from the carboxyl group of one mol­ecule and donates hydrogen bonds to ketone and carboxyl Czdbnd;O functions in two additional mol­ecules, yielding a sheet‐like structure of parallel ribbons. The keto acid adopts a chiral conformation through rotation of the carboxyl group by 62.50 (15)° relative to the plane defined by its point of attachment and the ketone C and O atoms. Two C—H⋯O close contacts exist in the structure.     

Aqua­(di‐2‐pyridylamine)oxalato­copper(II) monohydrate

In the structure of the title complex, [Cu(C₂O₄)(C₁₀H₉N₃)(H₂O)]·H₂O, the Cu^II atom displays a square‐pyramidal geometry, being coordinated by two N atoms from the di‐2‐pyridylamine ligand, two O atoms from the oxalate group and one O atom of a water mol­ecule. The complex mol­ecules are linked to form a three‐dimensional supra­molecular array by hydrogen‐bonding inter­actions between coordinated/uncoordinated water mol­ecules and the uncoordinated oxalate O atoms of neighboring mol­ecules.     

Methyl 1‐(4‐chloro­benzyl)‐2‐(4‐methyl­piperazin‐1‐yl)‐1H‐benz­imidazole‐5‐carboxyl­ate hemihydrate

The title compound, C₂₁H₂₃ClN₄O₂·0.5H₂O, contains two independent mol­ecules in the asymmetric unit. In each mol­ecule the piperazine ring adopts a chair conformation; the deviations of the piperazine N atoms from the best plane through the remaining four C atoms are ?0.678 (3) and 0.662 (3) Å in mol­ecule A, and 0.687 (3) and ?0.700 (3) Å in mol­ecule B. The mol­ecules are linked by two hydrogen bonds of the O—H?N type involving the O atom of the water mol­ecule of crystallization.     

A new norkaurane‐γ‐lactone from Parinari sprucei

The title tetracyclic diterpenoid, 10,13,16,17‐tetra­hydroxy‐9‐methyl‐15‐oxo‐20‐norkaurane‐18,10‐carbolactone hemihydrate, C₂₀H₂₈O₆·0.5H₂O, is a plant metabolite from Parinari sprucei, part of the Venezuelan Amazon flora. The asymmetric unit consists of two nearly identical mol­ecules of the diterpenoid and one mol­ecule of water. Some of the geometric parameters reflect steric strain in the mol­ecule. The extended structure is characterized by hydrogen bonds and weaker hydrogen‐mediated interactions, which involve all of the hydroxy groups and propagate in sheets that coincide with the (002) family of planes. The water mol­ecule acts as a double hydrogen‐bond donor and single acceptor and thus plays a critical role in the pattern of intermolecular interactions.     

3,4‐Di­hydro‐6‐methyl‐3‐β‐d‐ribo­furan­osyl‐4,5′‐cyclo‐9H‐imidazo[1,2‐a]­purin‐9‐one hydrate

In the title compound, C₁₃H₁₃N₅O₄·H₂O (4,5′‐cyclo­wyosine·H₂O), the cyclization forces a syn arrangement of the aglycon with respect to the sugar moiety. The ribo­furan­ose part of the mol­ecule displays a β‐d configuration with an envelope C1′‐endo pucker. The mol­ecules are arranged in columns along the short a axis and are linked to water mol­ecules through O—H?O and O—H?N hydrogen bonds.     

Triterpenoide. XIX. 3β‐Hydroxy‐11‐oxo‐18α‐olean‐12‐en‐28‐säure‐methyl­ester und 3,11‐Dioxo‐18α‐olean‐12‐en‐28‐säure‐methyl­ester

The X‐ray crystal structure analyses of 3β‐hydroxy‐11‐oxo‐18α‐olean‐12‐en‐28‐oic acid methyl ester ethanol solvate, C₃₁H₄₈O₄·C₂H₆O, (I), and 3,11‐dioxo‐18α‐olean‐12‐en‐28‐oic acid methyl ester, C₃₁H₄₆O₄, (II), are described. These two compounds differ only in the structure of ring A. In (I), ring A has a chair conformation, while in (II), it has a twisted boat conformation. In both compounds, ring C has a slightly distorted sofa conformation, rings B, D and E are in chair conformations, and rings D and E are trans‐fused. The asymmetric unit of (I) contains one mol­ecule of ethanol linked by hydrogen bonds with two different mol­ecules of (I).     

(−)‐3,7‐Dioxo‐5β‐cholanic acid: dual hydrogen‐bonding modes in a diketonic bile‐acid derivative

The asymmetric unit of the title compound, C₂₄H₃₆O₄, contains three mol­ecules, all differing in their side‐chain conformations and all linked by hydrogen bonding confined entirely within a three‐mol­ecule block. One connection is of the acid‐to‐ketone type [O⋯O = 2.7055 (19) Å and O—H⋯O = 180°] and the other involves carboxyl pairing [O⋯O = 2.6485 (18) and 2.6598 (18) Å, and O—H⋯O = 168 and 174°]. Numerous inter­molecular C—H⋯O close contacts connect neighbouring mol­ecules.     

The α‐ and β‐epoxides of 3β‐acet­oxy‐5α‐lanost‐9(11)‐en‐7‐one

The structures of 3β‐acet­oxy‐9α,11α‐ep­oxy‐5α‐lanost‐9(11)‐en‐7‐one and 3β‐acet­oxy‐9β,11β‐ep­oxy‐5α‐lanost‐9(11)‐en‐7‐one, C₃₂H₅₂O₄, differ in their respective substituted cyclo­hexa­none rings but adopt similar conformations in the other three rings. In both of the crystal structures, weak inter­molecular C—H⋯O inter­actions are present.     

N‐(2‐Amino‐1,6‐di­hydro‐5‐nitro­so‐6‐oxopyrimidin‐4‐yl)‐l‐isoleucine–water (4/1): interplay of molecular and supramolecular structures

In the title compound, 2C₁₀H₁₅N₅O₄·0.5H₂O, there are two independent mol­ecules of the pyrimidinyl­isoleucine in general positions and a water mol­ecule lying on a twofold rotation axis. The bond lengths within the organic moieties demonstrate significant polarization of the electronic structure. Each of the organic mol­ecules participates in 12 intermolecular hydrogen bonds, of O—H?O and N—H?O types, while the water mol­ecule acts as a double donor and as a double acceptor of O—H?O hydrogen bonds. The organic components are linked by the hydrogen bonds into a single three‐dimensional framework, reinforced by the water mol­ecules.     

4‐Dimethyl­amino‐β‐nitro­styrene and 4‐dimethyl­amino‐β‐ethyl‐β‐nitro­styrene at 100 K

The structures of 4‐dimethyl­amino‐β‐nitro­styrene (DANS), C₁₀H₁₂N₂O₂, and 4‐dimethyl­amino‐β‐ethyl‐β‐nitro­styrene (DAENS), C₁₂H₁₆N₂O₂, have been solved at T = 100 K. The structure solution for DANS was complicated by the presence of a static disorder, characterized by a misorientation of 17% of the mol­ecules. The mol­ecule of DANS is almost planar, indicating significant conjugation, with a push–pull effect through the styrene skeleton extending up to the terminal substituents and enhancing the dipole moment. As a consequence of this conjugation, the hexa­gonal ring displays a quinoidal character; the lengths of the C—N [1.3595 (15) Å] and C—C [1.448 (2) Å] bonds adjacent to the benzene ring are shorter than single bonds. The mol­ecules are stacked in dimers with anti­parallel dipoles. In contrast, the mol­ecule of DAENS is not planar. The ethyl substituent pushes the nitro­propene group out of the benzene plane, with a torsion angle of −21.9 (3). Nevertheless, the mol­ecule remains conjugated, with a shortening of the same bonds as in DANS.     

Two hydrates of 2,6‐bis­(1H‐benzimidazol‐2‐yl)­pyridine

The structures of the mono‐ and sesquihydrates of 2,6‐bis(1H‐benz­imi­da­zol‐2‐yl)­pyridine (bbip) are reported. Phase (I), C₁₉H₁₃N₅·H₂O, has one water and one bbip mol­ecule in the asymmetric unit, while phase (II), C₁₉H₁₃N₅·1.5H₂O, has three water mol­ecules and two bbip mol­ecules in the asymmetric unit. The compounds exhibit very similar molecular geom­etries but different packing organizations, which result from intricate hydrogen‐bonding schemes.     

C[triple‐bond]C—H systems as hydrogen‐bond donors and acceptors: trans‐1,2‐diethynylcyclo­hexane‐1,2‐diol and trans‐1,4‐diprop‐2‐ynylcyclo­hexane‐1,4‐diol monohydrate

The title 1,2‐diol derivative, C₁₀H₁₂O₂, crystallizes with two independent but closely similar mol­ecules in the asymmetric unit. Only two of the four OH groups are involved in classical hydrogen bonding; the mol­ecules thereby associate to form chains parallel to the short c axis. The other two OH groups are involved in O—H⋯(C[triple‐bond]C) systems. Additionally, three of the four C[triple‐bond]C—H groups act as donors in C—H⋯O inter­actions. The 1,4‐diol derivative crystallizes with two independent half‐mol­ecules of the diol (each associated with an inversion centre) and one water mol­ecule in the asymmetric unit, C₁₂H₁₆O₂·H₂O. Both OH groups and one water H atom act as classical hydrogen‐bond donors, leading to layers parallel to the ac plane. The second water H atom is involved in a three‐centre contact to two C[triple‐bond]C bonds. One acetyl­enic H atom makes a very short `weak' hydrogen bond to a hydr­oxy O atom, and the other is part of a three‐centre system in which the acceptors are a hydroxy O atom and a C[triple‐bond]C bond.     

1,1′‐Di(hydrazinocarbonylmethyl)‐2,2′‐biimidazole monohydrate and 1,1′‐di[2‐(hydrazinocarbonyl)ethyl]‐2,2′‐bi­imidazole

The crystal structures of the title compounds, alternatively called 2,2′‐(2,2′‐bi­imid­azole‐1,1′‐diyl)­diaceto­hydra­zide monohydrate, C₁₀H₁₄N₈O₂·H₂O, (I), and 3,3′‐(2,2′‐bi­imid­azole‐1,1′‐diyl)­dipropion­o­hydra­zide, C₁₂H₁₈N₈O₂, (II), respectively, have been determined. The mol­ecules consist of half‐mol­ecule asymmetric units related by a twofold rotation in (I) and by a center of inversion in (II). The imidazole rings of both mol­ecules crystallize in a nearly coplanar fashion [dihedral angles of 5.91 (3) and 0.0 (1)° for (I) and (II), respectively]. Both planar hy­dra­zinocarbonylalkyl substituents are essentially planar and assume the E orientation.