The interaction of biliverdin and its dimethyl ester with superoxide ion

Bilin-1,19(21H,24H)-diones interact with O₂·- in DMSO giving rise to adducts showing charge-transfer character. This reaction can be reversed by addition of O₂·- consuming compounds. The O₂·-biliverdin dimethyl ester adduct collapses partially to 10-oxobilirubin dimethyl ester when treated with thiourea and 2-mercaptoethanol.     

The configurations in solution of the biliverdin TXγ phorcabilin and isophorcabilin dimethyl esters

The configurations in solution of the title compounds have been attributed by ¹H NMR. Correlations with the absorption spectra show the importance of conformational restraints in the spectroscopic properties of the bilatriene system which is usually chosen as chromophore model for the phytochrome phototransformation.     

The conformation of biliverdin in dimethyl sulfoxide: implications for the coordination with copper

Biliverdin (BV) structure was analyzed by using NMR techniques and unrestricted density function theory simulations to explain the incapacity of BV to build coordination complex(es) with Cu²⁺ in dimethyl sulfoxide, which was confirmed by UV-Vis, EPR and NMR spectroscopy. NMR showed that N atoms are protonated in all four pyrrole rings. The structure is stabilized by two hydrogen bonds between NH moieties and carbonyl oxygens from opposite terminal pyrrole rings, and by the bending of propionyl chain with carboxyl group out of the plain toward central position of BV. The simulations of deprotonated BV, which builds copper complexes in water and chloroform as described previously, showed a different conformation and organization of hydrogen bonds. Taking into account that deprotonation represents a critical step in coordinate bonds formation, the protonation of an additional N atom may represent a key difference between the interactions of BV with copper in different solvents.

     

The carbon-13 NMR spectrum of dimethoxybilirubin dimethyl ester

The ¹³C NMR spectrum of dimethoxybilirubin dimethyl ester (1) is reported. Methoxyvinylneoxanthobilirubinic acid methyl ester, a compound containing one endo-vinylpyrromethene unit, was prepared and used in the assignment of the spectrum of 1.     

Radical copolymerization of proto-hemin dimethyl ester

Iron(III) proto-porphyrin IX dimethyl ester (HDME) can copolymerize with π-conjugated monomers binding at one end of the polymer chain. Apparent Q, e values of HDME were Q = 70 and e = ?0.17. The copolymerization of HDME with π-unconjugated monomer was feasible by using π-conjugated monomer as a third component. When unconjugated vinylimidazoles were used as monomers, the obtained ternary copolymers of HDME formed intramacromolecular complexes of iron(II) porphyrin with vinylimidazole residues, which gave stable carbon monoxide adducts.     

13C Nuclear magnetic resonance spectroscopy of biliverdin IX dimethyl esters and related compounds

The ¹³C NMR spectra of differently substituted or conformationally restrained biliverdins have been recorded. Certain characteristics are found for these tetrapyrrolic systems, i.e. the chemical shifts of the methine bridge carbons, the vinyl groups and the bis-lactam form. This study, in conjunction with other spectroscopic data, may be used to assign the structures of biliverdins IX αβγλ, phorcabilin, isophorcabilin and neobiliverdin IXλ.     

Pseudopolymorphs of chelidamic acid and its dimethyl ester

Different tautomeric and zwitterionic forms of chelidamic acid (4‐hydroxypyridine‐2,6‐dicarboxylic acid) are present in the crystal structures of chelidamic acid methanol monosolvate, C₇H₅NO₅·CH₄O, (Ia), dimethylammonium chelidamate (dimethylammonium 6‐carboxy‐4‐hydroxypyridine‐2‐carboxylate), C₂H₈N⁺·C₇H₄NO₅⁻, (Ib), and chelidamic acid dimethyl sulfoxide monosolvate, C₇H₅NO₅·C₂H₆OS, (Ic). While the zwitterionic pyridinium carboxylate in (Ia) can be explained from the pK_a values, a (partially) deprotonated hydroxy group in the presence of a neutral carboxy group, as observed in (Ib) and (Ic), is unexpected. In (Ib), there are two formula units in the asymmetric unit with the chelidamic acid entities connected by a symmetric O—H...O hydrogen bond. Also, crystals of chelidamic acid dimethyl ester (dimethyl 4‐hydroxypyridine‐2,6‐dicarboxylate) were obtained as a monohydrate, C₉H₉NO₅·H₂O, (IIa), and as a solvent‐free modification, in which both ester molecules adopt the hydroxypyridine form. In (IIa), the solvent water molecule stabilizes the synperiplanar conformation of both carbonyl O atoms with respect to the pyridine N atom by two O—H...O hydrogen bonds, whereas an antiperiplanar arrangement is observed in the water‐free structure. A database study and ab initio energy calculations help to compare the stabilities of the various ester conformations.     

Manganese(III) biliverdin IX dimethyl ester: a powerful catalytic scavenger of superoxide employing the Mn(III)/Mn(IV) redox couple

A manganese(III) complex of biliverdin IX dimethyl ester, (MnIIIBVDME)2, was prepared and characterized by elemental analysis, UV/vis spectroscopy, cyclic voltammetry, chronocoulometry, electrospray mass spectrometry, freezing-point depression, magnetic susceptibility, and catalytic dismuting of superoxide anion (O2.-). In a dimeric conformation each trivalent manganese is bound to four pyrrolic nitrogens of one biliverdin dimethyl ester molecule and to the enolic oxygen of another molecule. This type of coordination stabilizes the +4 metal oxidation state, whereby the +3/+4 redox cycling of the manganese in aqueous medium was found to be at E1/2 = +0.45 V vs NHE. This potential allows the Mn(III)/Mn(IV) couple to efficiently catalyze the dismutation of O2.- with the catalytic rate constant of kcat = 5.0 x 10(7) M-1 s-1 (concentration calculated per manganese) obtained by cytochrome c assay at pH 7.8 and 25 degrees C. The fifth coordination site of the manganese is occupied by an enolic oxygen, which precludes binding of NO., thus enhancing the specificity of the metal center toward O2.-. For the same reason the (MnIIIBVDME)2 is resistant to attack by H2O2. The compound also proved to be an efficient SOD mimic in vivo, facilitating the aerobic growth of SOD-deficient Escherichia coli.     

Preparation and thermal behavior of poly-p-phenylene diacrylic acid dimethyl ester

The photopolymerization behavior of p-phenylene diacrylic acid dimethyl ester (p-PDA Me) crystal and the thermal behavior of the resultant poly-p-PDA Me were investigated. From the kinetic study of polymerization at various temperatures a topochemical process via a stepwise mechanism was observed. Continuous change from monomer to polymer crystals was demonstrated by x-ray diffraction pattern and DSC analysis. Crystallinity of the reacting phase was maintained at an extremely high degree during the polymerization process in support of monomer crystal lattice control. Thermal study on as-polymerized poly-p-PDA Me crystal confirmed that the thermal reaction was a polymer crystal lattice-controlled depolymerization, which was followed by miscellaneous processes that involved vaporization, sublimation, and deterioration of the oligomeric or monomeric units of p-PDA Me. Thermal stability was dependent on the molecular weight. All the results are compared with those of four-center-type photopolymerization in the crystalline state.     

Synthesis of new amphiphilic chlorin derivatives from protoporphyrin-IX dimethyl ester

A simple synthesis of new amphiphilic chlorin derivatives from protoporphyrin-IX dimethyl ester is reported. The preparation of such compounds is based in a straightforward methodology, which involves the Diels-Alder reaction of protoporphyrin-IX dimethyl ester with maleic anhydride followed by addition of nucleophilic species to the initially formed cycloadducts, a transformation, which is highly regioselective. Preliminary photophysical studies with the new compounds show that they meet adequate features for PDT applications.     

Investigation of the association behaviors between biliverdin and bovine serum albumin by fluorescence spectroscopy

The interaction between biliverdin and bovine serum albumin (BSA) has been studied by steady fluorescence spectroscopy, synchronous fluorescence and resonance light scanning spectra. The binding of biliverdin to BSA quenches the tryptophan residue fluorescence and the results show that both static and dynamic quenching occur together with complex formation. The binding constant and binding sites of biliverdin to BSA at pH 7.1 are calculated to be 3.33 × 10⁸ L/mol and 1.54, respectively, according to the double logarithm regression curve. In addition, the distance between the biliverdin and BSA is estimated to be 1.25 nm using Föster's equation on the basis of the fluorescence energy transfer. Furthermore the synchronous fluorescence spectra show that the microenvironment of the tryptophan residues has not obvious changes, which obeys the phase distribution model. Finally, the thermodynamic data show that biliverdin molecules enter the hydrophobic cavity of BSA via hydrophobic interaction.     

Nitration of cubane-1,4-dicarboxylic acid dimethyl ester by dinitrogen tetraoxide

A first direct nitration of C—H bond of cubane-1,4-dicarboxylic acid dimethyl ester by dinitrogen tetraoxide at 20 °C has been carried out. During the nitration no rearrangement of cubane skeleton has been observed.