Starburstr̀ dendrimers — Nanoscopic supermolecules according to dendritic rules and principles

Construction of dendritic macromolecules based on the mimicry of macroscopic branching patterns found in trees is reviewed. From this mimicry, synthetic strategies have been developed for the preparation of precise macromolecular building blocks referred to as Starburstr̀/Cascade dendrimers. These dendrimer constructions involve the amplifications of matter (mass) by organizing monomer units around initiator cores according to geometrically driven mathematical rules and principles. The predictable precision of mass and valency (i.e., number of reactive surface groups) displayed by these dendrimers, as a function of generation, validates their proposed role as fundamental nanoscopic building blocks (i.e., particle sizes of 10 −1000Å). This emerging area of “structure-controlled polymers” is defining a fourth new major class of macromolecular architecture. Ideal, defect free structures of Starburst^r̀ polyamidoamine (PAMAM) dendrimers (e.g., NH₃ core; generation = 2.0, MWt. 2,414) have been synthesized in kilogram quantities with overall yields of 60-70%. The precise masses and surface valencies associated with these dendrimer structures allow one to view these entities as “nanoscopic analogues” to atoms. As such, basic rules of chemical combination between dendrimers to give definite, stoichiometric compositions can be defined much as first noted by Dalton for atoms. The use of these nanoscopic building blocks (i.e., 10–1000Å species) to construct supramolecular/supermolecular structures such as nanoscopic compounds, clusters and macro-lattices will be reviewed. Registered trademark of Dendritech Inc.     

Determination of the spatial distribution of neutron fluence rate using printed activation foil arrays

A novel method to fabricate neutron activation foil arrays using a semiconductor printing technique is proposed; it allows higher resolutions, and fast and convenient fabrication. A validation irradiation test is performed, using a traditional array and the proposed printed array. The latter exhibited higher resolution and avoided the spatial distortion of the traditional foil array which can reach several tens of percent. Furthermore, it can be easily bent and made to use small individual foils (1 mm or less), making it suitable to measure neutron spatial distributions at the curved surfaces of pipes or the inner surface of irradiation passages.     

Batch fabrication of disposable screen printed SERS arrays

A novel facile method of fabricating disposable and highly reproducible surface-enhanced Raman spectroscopy (SERS) arrays using screen printing was explored. The screen printing ink containing silver nanoparticles was prepared and printed on supporting materials by a screen printing process to fabricate SERS arrays (6 × 10 printed spots) in large batches. The fabrication conditions, SERS performance and application of these arrays were systematically investigated, and a detection limit of 1.6 × 10(-13) M for rhodamine 6G could be achieved. Moreover, the screen printed SERS arrays exhibited high reproducibility and stability, the spot-to-spot SERS signals showed that the intensity variation was less than 10% and SERS performance could be maintained over 12 weeks. Portable high-throughput analysis of biological samples was accomplished using these disposable screen printed SERS arrays.     

Pd nanowire arrays as electrocatalysts for ethanol electrooxidation

Highly ordered Pd nanowire arrays were prepared by template-electrodeposition method using anodic aluminum oxide template. The Pd nanowire arrays, in this paper, have high electrochemical active surface and show excellent catalytic properties for ethanol electrooxidation in alkaline media. The activity of Pd nanowire arrays for ethanol oxidation is not only higher that of Pd film, but also higher than that of commercial E-TEK PtRu(2:1 by weight)/C. The micrometer sized pores and channels in nanowire arrays act as structure units. They make liquid fuel diffuse into and products diffuse out of the catalysts layer much easier, therefore, the utilization efficiency of catalysts gets higher. Pd nanowire arrays are stable catalysts for ethanol oxidation. The nanowire arrays may be a great potential in direct ethanol fuel cells and ethanol sensors.     

Size-selective catalytic activity of Pd nanoparticles encapsulated within end-group functionalized dendrimers

The synthesis and size-selective catalytic activity of Pd nanoparticles encapsulated within dendrimers functionalized with different-sized end groups is described. We designed and synthesized a series of fourth-generation poly(amidoamine) dendrimers having various extents of steric crowding on their periphery. This was accomplished by reacting the terminal amine groups of these dendrimers with epoxyalkanes substituted with different-sized alkyl groups. The modified dendrimers were characterized by 1H NMR, 13C NMR, and matrix-assisted laser desorption ionization mass spectrometry. Nearly monodisperse (1.7 +/- 0.2 nm) Pd nanoparticles were encapsulated within the interior of these dendrimers, and the resulting composite catalysts were used for the hydrogenation of three alpha-allylic alcohols having different sizes. The results showed a clear correlation between the extent of steric crowding on the dendrimer surface and the turnover frequencies (TOFs) for the substrates: more steric crowding on the dendrimer surface led to lower TOFs.     

Designer peptide dendrimers using click reaction

We designed and synthesized various peptide dendrimers using a 1,3-dipolar cycloaddition (Click) reaction. The dendritic structures reported here include symmetrical, asymmetrical, and cationic dendrimers with triazole, cystine, aromatic, aliphatic, and Lys-Asp dipeptide cores. The high chemoselectivity of the click reaction allowed us to synthesize good yields of high-purity protected and unprotected dendritic structures. Triazole is an excellent peptide bond mimic, which remains hydrolytically stable. Dendrimer 15a and the core unit 21 gelate in a mixture of organic solvents. We also demonstrated the versatility of the design by synthesizing various carbohydrate-based dendrimers.     

Photolabile dendrimers using o-nitrobenzyl ether linkages

[reaction: see text] Benzyl aryl ether dendrimers containing photosensitive, veratryl-based o-nitrobenzyl AB linkages (bold bonds) were prepared to the third generation and shown to undergo site-specific degradation when irradiated with ultraviolet light.     

"Click" dendrimers: synthesis, redox sensing of Pd(OAc)2, and remarkable catalytic hydrogenation activity of precise Pd nanoparticles stabilized by 1,2,3-triazole-containing dendrimers

"Click" dendrimers containing 1,2,3-triazolyl ligands that coordinate to PdII(OAc)2 have been synthesized in view of catalytic applications. Five of these dendrimers contain ferrocenyl termini directly attached to the triazole ligand in order to monitor the number of PdII that are introduced into the dendrimers by cyclic voltammetry. Reduction of the PdII-triazole dendrimers by using NaBH4 or methanol yields Pd nanoparticles (PdNPs) that are stabilized either by several dendrimers (G0, DSN) or by encapsulation inside a dendrimer (G1 and G2: DEN), as confirmed by TEM. Relative to PAMAM-DENs (PAMAM=poly(amidoamine)), the "click" DSNs and DENs show a remarkable efficiency and stability for olefin hydrogenation under ambient conditions of various substrates. The influence of the reductant of PdII bound to the dendrimers is dramatic, reduction with methanol leading to much higher catalytic activity than reduction with NaBH4. The most active NPs are shown to be those derived from dendrimer G1, and variation of its termini groups (ferrocenyl, alkyl, phenyl) allowed us to clearly delineate, optimize, and rationalize the role of the dendrimer frameworks on the catalytic efficiencies. Finally, hydrogenation of various substrates catalyzed by these PdNPs shows remarkable selectivity features.     

Selective peptide binding using facially amphiphilic dendrimers

Amphiphilic dendrimers, which contain both hydrophobic and hydrophilic groups in every repeat unit, exhibit environment-dependent assemblies both in hydrophilic solvent, water, and in lipophilic solvent, toluene. Upon investigating the status of these assemblies in a mixture of immiscible solvents, these dendrimers were found to be kinetically trapped in the solvent in which they are initially assembled. This property has been exploited to selectively extract peptides from aqueous solution into an organic phase, where the peptides bind to the interior functionalities of the dendritic inverse micelles. While the corresponding small molecule surfactant does not exhibit any selective binding toward peptides, all dendrons (G1-G3) are capable of this selective binding. We show that the inverse micelle-type assembly itself is crucial for the binding event and that the assembly formed by the G1 dendron has a greater capability for binding compared to the G2 or G3 dendrons. We have also shown that the average apparent pKa of the carboxylic acid functionalities varies with generation, and this could be the reason for the observed differences in binding capacity.     

Electrodeposited fabrication of highly ordered Pd nanowire arrays for alcohol electrooxidation

Highly ordered Pd nanowire arrays (NWAs) are prepared using a porous aluminum oxide template by pulse electrodeposition. The obtained Pd nanowire arrays with the diameter of 50 nm and length of 850 nm have been characterized by scanning electron microscopy, energy dispersive X-ray analysis, and high resolution transmission electron microscope. Meanwhile, the electrocatalytic activity of Pd NWAs electrodes for methanol and isopropanol oxidation in alkaline media is studied. It is found that the obtained nanostructures exhibit excellent catalytic activity for alcohol electrooxidation. The isopropanol oxidation shows the higher activity on Pd NWAs electrode than methanol in alkaline medium.     

Palladium catalysis using dendrimers: molecular catalysts versus nanoparticles

Dendritic Pd catalysts, dendrimer-stabilized Pd nanoparticle (PdNP) catalysts, and their comparison and combined use for carbon–carbon coupling reactions are discussed with emphasis on the research carried out in the author’s laboratory during the last decade. Multinuclear star-shaped catalysts rather than dendritic catalysts can reach the efficiency of the best monometallic catalysts, whereas PdNPs stabilized by dendrimers can react with turnover numbers close to 10⁶ and bring useful mechanistic indications. In both areas, leaching issues are examined. Finally, results of the literature in asymmetric Pd catalysis by chiral dendrimers and Pd nanoparticles stabilized by chiral ligands are also reviewed, revealing the importance of the dendritic and molecular ligand design and the role of leaching Pd atoms.     

Construction of giant dendrimers using a tripodal building block

Giant pentane-soluble organo-silicon dendrimers have been synthesized using a triallylphenol brick according to a new divergent construction that uses a hydrosilylation-nucleophilic substitution sequence up to the ninth generation (G(9)). All the reactions were monitored by (1)H, (13)C, and (29)Si NMR until G(9), indicating that they were clean at the NMR accuracy until this last generation. MALDI TOF mass spectra were recorded for G(1) to G(4) and show the nature and amounts of defects that are intrinsic to the divergent construction. This technique and SEC (recorded up to G(5)) confirm the monodispersity (1.00 to 1.02) from G(1) to G(5). HRTEM and AFM images recorded for the high generations disclose the expected smooth dendrimer size progression and the globular shape. At G(9), the theoretical number of termini (TNT) is 177 407 branches (abbreviation: G(9)-177 047). It is estimated that more than 10(5) terminal branches are actually present in the G(9) dendrimer, far beyond the De Gennes "dense-packing" limit (6000 branches), and it is believed that the branch termini turn inside the dendrimer toward the core. This is corroborated by lower reaction rates and yields for the highest generation numbers presumably due to intradendritic reactions. It is probable that the dendritic construction is limited by the density of branches inside the dendrimer, i.e., far beyond the dense-packing limit.     

Studying protein-protein interactions using peptide arrays

Screening of arrays and libraries of compounds is well-established as a high-throughput method for detecting and analyzing interactions in both biological and chemical systems. Arrays and libraries can be composed from various types of molecules, ranging from small organic compounds to DNA, proteins and peptides. The applications of libraries for detecting and characterizing biological interactions are wide and diverse, including for example epitope mapping, carbohydrate arrays, enzyme binding and protein-protein interactions. Here, we will focus on the use of peptide arrays to study protein-protein interactions. Characterization of protein-protein interactions is crucial for understanding cell functionality. Using peptides, it is possible to map the precise binding sites in such complexes. Peptide array libraries usually contain partly overlapping peptides derived from the sequence of one protein from the complex of interest. The peptides are attached to a solid support using various techniques such as SPOT-synthesis and photolithography. Then, the array is incubated with the partner protein from the complex of interest. Finally, the detection of the protein-bound peptides is carried out by using immunodetection assays. Peptide array screening is semi-quantitative, and quantitative studies with selected peptides in solution are required to validate and complement the screening results. These studies can improve our fundamental understanding of cellular processes by characterizing amino acid patterns of protein-protein interactions, which may even develop into prediction algorithms. The binding peptides can then serve as a basis for the design of drugs that inhibit or activate the target protein-protein interactions. In the current review, we will introduce the recent work on this subject performed in our and in other laboratories. We will discuss the applications, advantages and disadvantages of using peptide arrays as a tool to study protein-protein interactions.     

Drug profiling using planar microelectrode arrays

Microelectrode arrays (MEAs) with evenly distributed multiple sensor spots have been designed for specific applications. Using the MEAs, we determined the relative profiles of potassium channel openers (KCOs) on cultured embryonic Sprague-Dawley rat cardiac myocytes. KCO, pinacidil (PIN), cromakalim (CROM), SDZ PCO400 (SDZ), or its vehicle, was added to the myocytes cumulatively. The action potential signal shapes in the presence of PIN and SDZ show that the changes in voltage over time and the magnitudes of the associated voltage change were reduced concentration-dependently. CROM affected sodium influx more than PIN and SDZ. The comparisons of changes in the rate of beating and propagation speed in the presence of KCOs were made using their corresponding pD(2) values (the negative log of EC(50)). All KCOs caused concentration-dependent reductions in the rate of beating and propagation speed, with SDZ being the most potent. In addition to the signal shapes, rate of beating, and propagation speed, the origin of excitation and the excitation pattern inside the culture can be also extracted. The results show that the present system can differentiate the effects of different KCOs on myocytes. It might be possible to utilise the MEA as a means to classify drug action based upon a combined interpretation of the three different datasets gained from the extracellular recordings. The combination of these observations might be used as 'drug signatures' when profiling drugs in the future.     

Micro- and nanofabrication of robust reactive arrays based on the covalent coupling of dendrimers to activated monolayers

We report on methods to fabricate robust micro- and nanopatterned platforms, comprising high functional group densities and quasi three-dimensional structures, for possible applications in biochip array technologies. For this purpose, amine-terminated poly(amidoamine) (PAMAM) dendrimers were immobilized via amide linkage formation on 11,11'-dithiobis(N-hydroxysuccinimidylundecanoate) (NHS-C10) self-assembled monolayers (SAMs) on gold surfaces. The coupling reaction and the resulting assemblies were characterized by grazing incidence reflection Fourier transform infrared spectroscopy, contact angle measurements, X-ray photoelectron spectroscopy (XPS), and atomic force microscopy; the obtained surface coverage values were successfully fitted with a Langmuir isotherm. The fraction of unreacted peripheral primary amine groups of the surface-immobilized PAMAM dendrimers was 28% as determined by XPS analysis of trifluoroacetic anhydride-labeled assemblies. Patterning of the PAMAM dendrimers on NHS-C10 SAMs on the micrometer and sub-100-nm scale was achieved by microcontact printing and dip pen nanolithography. The resulting patterns are characterized by their high degree of order and stability of the transferred molecules due to covalent attachment.     

Nanoscale probing of the enamel nanorod surface using polyamidoamine dendrimers

Although it is known that noncollagenous proteins of dental origin bind to the hydroxyapatite crystal surfaces, no measure of their binding strength has been calculated. This experiment used -COOH-capped generation 7 PAMAM dendrimers as nanoprobes of the biological hydroxyapatite nanorod surfaces. Dendrimer distribution was characterized using AFM. The results showed dendrimers to be spaced at intervals along the c-axis of the crystals. From these observations and assuming a fully ionized -COOH dendrimer, a mathematical model of the binding capacity of the crystal surface with the dendrimer was developed. The Monte Carlo method was used to simulate the binding process between the dendrimer and crystal surface, and the binding strength of the -COOH groups to the surface was calculated to be 90 +/- 20 kJ/mol. These results support the CFM studies which have described alternating bands of charge domains on the crystal surface and that the binding strength will be dependent on both the intensity of the charge on the protein and the crystal surface.     

Synthesis of dendrimers with multifunctional periphery using an ABB' monomer

A new methodology using an ABB' monomer for synthesizing dendrons with multiple functionalities in the periphery is described.     

Structural characterization of microcontact printed arrays of hexa(ethylene glycol)-terminated alkanethiols on gold

This paper reports on the structural characteristics of microcontact printed oligo(ethylene glycol)-terminated alkanethiol layers, HS(CH2)15CONH-(CH2CH2O)6-H (hereafter EG6), on gold. Microwetting, contact angle goniometry, imaging null ellipsometry, and infrared reflection-absorption spectroscopy (IRAS) are used to characterize the printed EG6 layers, and the quality of these layers in terms of layer thickness and the crystallinity of the alkyl and ethylene glycol portions is compared with data obtained from analogous layers prepared by solution self-assembly. The outcome of the printing process is critically dependent on the experimental parameters used to prepare the patterns. It is found that high quality layers, consisting of densely packed all-trans alkyl chains terminated with relatively helical hexa(ethylene glycol) tails, are formed by inking the poly(dimethylsiloxane) (PDMS) stamp with a 1 mM EG6 solution and contacting it with gold for 15 min. The homogeneity of printed layers is not as good as the homogeneity of those prepared from solution under similar conditions, most likely because of simultaneous transfer of low molecular weight residues from the PDMS stamp. These residues, however, can be easily removed upon ultrasonication in ethanol without affecting the quality of the printed layer. Further on, the microscopic square-shaped bare gold patterns formed after microcontact printing (muCP) are subsequently filled with 16-hexadecanoic acid (hereafter THA) or HS(CH2)15CONH-(CH2CH2O)6-COOH (hereafter EG6COOH) to provide a microarray platform for further covalent attachment of biomolecules. Well-defined structures in terms of wettability contrast, sharpness, and height differences between the printed and back-filled areas are confirmed by imaging null ellipsometry and microscopic wetting.     

Resident neuroelectrochemical interfacing using carbon nanofiber arrays

Carbon nanofiber electrode architectures are used to provide for long-term, neuroelectroanalytical measurements of the dynamic processes of intercellular communication between excitable cells. Individually addressed, vertically aligned carbon nanofibers are incorporated into multielement electrode arrays upon which excitable cell matrixes of both neuronal-like derived cell lines (rat pheochromocytoma, PC-12) and primary cells (dissociated cells from embryonic rat hippocampus) are cultured over extended periods (days to weeks). Electrode arrays are characterized with respect to their response to easily oxidized neurotransmitters, including dopamine, norepinephrine, and 5-hydroxytyramide. Electroanalysis at discrete electrodes following long-term cell culture demonstrates that this platform remains responsive for the detection of easily oxidized species generated by the cultured cells. Preliminary data also suggests that quantal release of easily oxidized transmitters can be observed at nanofiber electrodes following direct culture and differentiation on the arrays for periods of at least 16 days.