Synthesis of covalently linked porphyrin dimers and trimers

The synthesis of covalently linked porphyrin dimers and trimers is described. Mono- and dihydroxyporphyrins were synthesized by transeslerifying 5,10,15,20-tetra(4-carbomethoxy-phenyl)porphyrin with ethylene glycol. The mixture of transesterified porphyrins were separated by preparative thin layer chromatography. Metal derivatives were made of the mono- and dihydroxyporphyrins and these were reacted with the acid chloride of a monocarboxyporphyrin to yield hybrid dimers and trimers containing one melalloporphyrin and either one or two free base porphyrins. The structures and purity of the dimers and trimers were established by measuring the absorbance spectra, nmr spectra, and molecular weight by gel permeation chromatography.     

Isomeric Effect on Optoelectronic Properties and Photovoltaic Performance of Anthraquinone-Core Perylene Diimide (PDI) and Helical PDI dimers

Isomerism heavily influences the optoelectronic properties and self-assembly behavior of compounds and subsequently affects their device performance. Herein, two pairs of isomeric perylene diimide (PDI) dimers, PDI and PDI2, were designed and synthesized. The electron-deficient 9,10-anthraquinone group was employed as the bridge, and thus, the resultant dimers exhibited an acceptor–acceptor–acceptor (A-A-A) structure. To determine the isomeric effects on the optoelectronic properties and photovoltaic performance of these dimers, their absorptivity, luminescence, and redox behavior were studied. Bulk heterojunction organic solar cells based on these four dimers were fabricated and measured. The two PDI dimers exhibited clear differences in photovoltaic performance, whereas the two PDI2 analogues showed similar power conversion efficiencies (PCEs). The PCEs of the two PDI2 dimers are much higher than those of the PDI dimers. These results illustrate that the isomeric effect of PDI dimers is much larger than that of PDI2 dimers on the device performance, and proper expansion of conjugation could improve the device performance.     

Effects of bentonite on p-methoxybenzyl acetate: a theoretical model for oligomerization via an electrophilic-substitution mechanism

Tonsil Actisil FF, a commercial bentonitic clay, promotes the formation of a series of electrophilic-aromatic-substitution products from para-methoxybenzyl acetate in carbon disulfide. The molecules obtained correspond to linear isomeric dimers, trimers, tetramers and a pentamer, according to their spectroscopic data. A clear indication of the title mechanistic pathway for the oligomerization growth was obtained from the analysis of a set of computational-chemistry calculations using the density-functional-theory level B3LYP/6-311++G(d,p). The corresponding conclusions were based on the computed dipole moments, the HOMO/LUMO distributions, and a natural-populations analysis of the studied molecules.     

Characterization of 2-methylglyceric acid oligomers in secondary organic aerosol formed from the photooxidation of isoprene using trimethylsilylation and gas chromatography/ion trap mass spectrometry

In the present work, we have characterized in detail the chemical structures of secondary organic aerosol (SOA) components that were generated in a smog chamber and result from the photooxidation of isoprene under high-NO(x) conditions typical for a polluted atmosphere. Isoprene high-NO(x) SOA contains 2-methylglyceric acid (2-MG) and oligoester derivatives thereof. Trimethylsilylation, in combination with capillary gas chromatography (GC)/ion trap mass spectrometry (MS) and detailed interpretation of the MS data, allowed structural characterization the polar oxygenated compounds present in isoprene SOA up to 2-MG trimers. GC separation was achieved between 2-MG linear and branched dimers or trimers, as well as between the 2-MG linear dimer and isomeric mono-acetate derivatives thereof. The electron ionization (EI) spectra of the trimethylsilyl derivatives contain a wealth of structural information, including information about the molecular weight (MW), oligoester linkages, terminal carboxylic and hydroxymethyl groups, and esterification sites. Only part of this information can be achieved with a soft ionization technique such as electrospray (ESI) in combination with collision-induced dissociation (CID). The methane chemical ionization (CI) data were used to obtain supporting MW information. Interesting EI spectral differences were observed between the trimethylsilyl derivatives of 2-MG linear and branched dimers or trimers and between 2-MG linear dimer mono-acetate isomers.     

X-ray scattering and density-functional theory calculations to study the presence of hydrogen-bonded clusters in liquid N-methylacetamide

A structural investigation of liquid N-methylacetamide (NMA) is performed by x-ray scattering and density functional theory (DFT). Experimental data are analyzed to yield the total structure function SM(Q) and the pair correlation function g(r). The DFT calculations, using the standard triple zeta valence basis set augmented by a diffuse function for carbon, nitrogen and oxygen atoms, are performed on the one hand to study the structure and stability of the two possible conformers cis and trans. On the other hand, they are meant to examine some possible clusters which may describe the intermolecular arrangement in liquid NMA. Among two series of dimers and trimers associations, the spectra are particularly interpreted in terms of: Trans NMA dimers and trimers which resemble the short-range crystal structure, mixed cis and trans trimers and cis cyclic trimers. The H-bonding parameters and the intermolecular energy for each model are described.     

Role of back-biting for generation of hybrid dimers and trimers on flash pyrolysis of poly(styrene-co-methacrylonitrile)

The role of the back-biting reaction for generation of dimers and trimers on flash pyrolysis of poly(styrene-co-methacrylonitrile) by pyrolysis gas chromatography with the use of a Curie-point pyrolyzer has been investigated. Yields of each monomer, dimer, and trimer changed depending on the sequence distribution as well as on copolymer composition and pyrolysis temperature. The degradation behavior was explained by the competition between the back-biting reaction and depolymerization. It was found that the hybrid dimers and trimers were produced mainly by the back-biting reaction, which was followed by β-scission, and hence yields of hybrid dimers and trimers correctly reflect the sequence distribution of the copolymer of styrene and methacrylonitrile without interference from the second reaction of monomers regenerated in the flash pyrolysis. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 2747–2753, 1999     

Structural stability of poly(1-propyne) dimers and trimers

The relative thermodynamic energies of the poly(1-propyne) dimers and trimers show that both the conjugation and steric forces play an important role on the structural stability of these molecular systems. The two 1,4-disubstituted butenyne cis and trans dimers are predicted to be practically the same in energy, whereas the 2,4-disubstituted butenyne dimer is of relatively lower thermodynamic stability. The trimers, cis-trans (structure 4) and trans-trans (structure 10), are calculated to be relatively stable, and thus it is more likely that the polymer formation is based on these two trimers with the tail-head-tail-head addition. © 1996 John Wiley & Sons, Inc.     

Application of gas chromatography-tandem mass spectrometry to the analysis of inhibition of dimerisation of tributylphosphate under radiolysis. Identification of isomeric tributylphosphate-alkylbenzene inhibitor coupling products

Tributylphosphate (TBP), solvent used as extractant for reprocessing spent nuclear fuel, can dimerise under radiolysis. This occurs by radical radical recombination, leading to 10 isomeric dimers (TBP-TBP). These species are complexation agents and are responsible of fission product retention in the organic phase that increases the solvent degradation. In order to limit their formation two free radical inhibitors (In), isopropyl and 1,4-diisopropylbenzenes, were used. These additives reduce by about 50% the concentration of TBP-TBP dimers but this reduction is not strictly followed by TBP regeneration as mixed coupling products from TBP and inhibitor are detected. By using GC-MS-MS and selectively deuterated compounds, the identification of these different isomers (TBP-In) has been realised. From these identifications and from the analysis of the proportion of the different isomers, the major primary TBP radical generated under radiolysis was determined.     

PHOTOSENSITIZED DIMERIZATION OF URACIL

Abstract— The four isomeric dimers of uracil were isolated from photochemical reactions which were sensitized by acetone. Product analyses, made on the basis of the chemical properties of the compounds, showed that the h, h dimers predominate. Infrared and mass spectra for the dimers are here presented as well as nuclear magnetic resonance data. The syn h, h dimer has been found in two polymorphic forms.     

Synthesis of thiol-derivatized porphyrin dimers and trimers for studies of architectural effects on multibit information storage

We present the rational design and synthesis of multiporphyrin arrays containing thiol-derivatized linkers for the purpose of multibit molecular information storage. Porphyrin dimers and trimers were synthesized by the Pd-mediated coupling of iodo-substituted and ethynyl-substituted porphyrin building blocks in 5-51% yields. Each porphyrin dimer bears one S-acetylthio group. The architecture of the trimers incorporates a trans-substituted porphyrin (central) bearing two S-acetylthio groups and two diphenylethyne-linked porphyrins (wings) in a trans geometry. The central porphyrin and the wing porphyrins bear distinct substituents and central metals, thereby affording different oxidation potentials. The S-acetylthio groups provide a means for attachment of the arrays to an electroactive surface. The dimers are designed for vertical orientation on an electroactive surface while the trimers are designed for horizontal orientation of the central porphyrin. Altogether seven different arrays were synthesized. Each array forms a self-assembled monolayer (SAM) on gold via in situ cleavage of the S-acetyl protecting group. The SAM of each array is electrochemically robust and exhibits multiple, reversible oxidation waves. In general, however, the trimeric arrays appear to form more highly ordered monolayers that exhibit sharper, better-defined redox features.     

Glyoxal oligomers: A computational study

Ab initio calculations at MP2/6‐311++G(2d,2p) computational level was used to analyze interactions between glyoxal (OCHCHO) dimers and trimers in the gas phase. The structures obtained have been analyzed with the atoms in molecules and natural bond orbital methodologies. Eight minima were located on the potential energy surface of the dimers. Eighteen different structures have been obtained for the trimers. CH···O type of interactions is clustering OCHCHO molecules in studied oligomers. Stabilization energies of dimers and trimers including basis set superposition error and ZPE corrections are in the range 4–8 kJ mol^?1 and 12–19 kJ mol^?1, respectively. Blue shift of CH bond upon complex formation in the ranges between 30–45 and 30–55 cm^?1 was predicted for dimers and trimers, respectively. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Study of a supramolecular structure of continental type petroleum asphaltenes

Supramolecular, electronic, and chemical structures of petroleum asphaltene molecules are studied. The investigations are carried out by quantum chemistry and molecular mechanics methods. The quantum chemical calculation of the structure-chemical parameters of dimers and trimers of petroleum asphaltenes is made using DFT/B3LYP. The refined values of the ionization potential and electron affinity of petroleum asphaltene molecules, their dimers and trimers agree well with the electron spectroscopy data. The results of the study of geometric structures of petroleum asphaltene dimers and trimers confirm the non-planar structure of asphaltenes.     

Experimental and theoretical studies on oligomer formation of N-confused porphyrin-zinc(II) complexes

Dimer formation of the N-confused porphyrin zinc(II), cadmium(II), and mercury(II) complexes was investigated experimentally as well as theoretically. The stable dimers were formed through coordination of the peripheral nitrogen atoms owing to flexible rotation of the confused pyrrole rings. The Z dimers were significantly more stable than the E dimers likely due to pi-pi interaction between the two confused pyrrole rings. The possible formation of higher oligomers such as trimers was suggested in the case of meso-unsubstituted derivatives.     

Anionic Snieckus-Fries rearrangement: solvent effects and role of mixed aggregates

Lithiated aryl carbamates (ArLi) bearing methoxy or fluoro substituents in the meta position are generated from lithium diisopropylamide (LDA) in THF, n-BuOMe, Me2NEt, dimethoxyethane (DME), N,N,N',N'-tetramethylethylenediamine (TMEDA), N,N,N',N'-tetramethylcyclohexanediamine (TMCDA), and hexamethylphosphoramide (HMPA). The aryllithiums are shown with (6)Li, (13)C, and (15)N NMR spectroscopies to be monomers, ArLi-LDA mixed dimers, and ArLi-LDA mixed trimers, depending on the choice of solvent. Subsequent Snieckus-Fries rearrangements afford ArOLi-LDA mixed dimers and trimers of the resulting phenolates. Rate studies of the rearrangement implicate mechanisms based on monomers, mixed dimers, and mixed trimers.     

The synthesis of bis(oligophenyleneethynylenes): novel potential nonlinear optical materials

Various functionalised phenyleneethynylene dimers 10 and trimers 12 were synthesised by palladium-catalyzed Sonogashira methodology. These dimers and trimers were coupled to 1,8-diido-10-methoxyanthracene to generate bis(oligophenyleneethynylenes) 17 and 18. Preliminary results towards the construction of both phenyleneethynylene and phenylenevinylene hybrid motifs are presented.     

Separation of chitosan oligomers by immobilized metal affinity chromatography

A novel approach for chitosan oligosaccharide (COS) separation by immobilized metal affinity chromatography (IMAC) based on the differences in the interactions of chelated copper (II) ions with various COS (dimers, trimers, tetramers) is described. Polyhydroxylic chromatographic supports (agarose CL-6B and silica) were functionalized with various chelating functions such as iminodiacetate (IDA), carboxymethyl-aspartate (CM-Asp) and tris(carboxymethyl)ethylenediamine (TED). The COS retention capacities of the columns were between 2 and 6 mg/cm(3), depending on the chelating group. The COS were separated and/or enriched up to 95% for dimer and trimer and 90% for the tetramer, with yields of 60-95%.     

Oligomeric liquid crystals: From monomers to trimers

A homologous series of linear liquid crystal trimers, the 4,4′-bis[ω-(4-methoxyazobenzene-4′-yloxy)alkoxy]azobenzenes, has been synthesized and characterized. The transitional properties of the trimers are compared with those of the corresponding series of dimers, the α,ω-bis(4-methoxyazobenzene-4′-oxy)alkanes, and monomers, the 4-methoxy-4′-alkoxyazobenzenes. Characteristically pronounced odd-even effects were seen for the transitional properties of both dimers and trimers on varying the spacer lengths. The clearing temperatures of the trimers were higher than those of the corresponding dimers, but as the length of the flexible spacers was increased this difference became rather small. The ratios of T _NI, and ΔS _NI/R for monomer:dimer and dimer:trimer are discussed. These are very similar to reported values for similar materials, suggesting that there may be a rather general relationship between the transitional properties of liquid crystal oligomers as the number of mesogenic units is increased.     

Excited singlet states of covalently bound, cofacial dimers and trimers of perylene-3,4:9,10-bis(dicarboximide)s

Perylene-3,4:9,10-bis(dicarboximide) (PDI) and its derivatives are robust organic dyes that strongly absorb visible light and display a strong tendency to self-assemble into ordered aggregates, having significant interest as photoactive materials in a wide variety of organic electronics. To better understand the nature of the electronics states produced by photoexcitation of such aggregates, the photophysics of a series of covalent, cofacially oriented, pi-stacked dimers and trimers of PDI and 1,7-bis(3',5'-di-t-butylphenoxy)perylene-3,4:9,10-bis(dicarboximide) (PPDI) were characterized using both time-resolved absorption and fluorescence spectroscopy. The covalent linkage between the chromophores was accomplished using 9,9-dimethylxanthene spacers. Placing n-octyl groups on the imide nitrogen atoms at the end of the PDI chromophores not attached to the xanthene spacer results in PDI dimers having near optimal pi-stacking, leading to formation of a low-energy excimer-like state, while substituting the more sterically demanding 12-tricosanyl group on the imides causes deviations from the optimum that result in slower formation of an excimer-like excited state having somewhat higher energy. By comparison, PPDI dimers having terminal n-octyl imide groups have two isomers, whose photophysical properties depend on the ability of the phenoxy groups at the 1,7-positions to modify the pi stacking of the PPDI molecules. In general, disruption of optimal pi-stacking by steric interactions of the phenoxy side groups results in excimer-like states that are higher in energy. The corresponding lowest excited singlet states of the PDI and PPDI trimers are dimer-like in nature and suggest that structural distortions that accompany formation of the trimers are sufficient to confine the electronic interaction on two chromophores within these systems. This further suggests that it may be useful to build into oligomeric PDI and PPDI systems some degree of flexibility that allows the structural relaxations necessary to promote electronic interactions between multiple chromophores.     

Synthesis, photophysical, electrochemical, and electrogenerated chemiluminescence studies. Multiple sequential electron transfers in BODIPY monomers, dimers, trimers, and polymer

Synthesis of the C(8) BODIPY monomers, dimers, and trimers, a C(8) polymer, and N(8) aza-BODIPY monomer and dimer was carried out. Methyl and mesityl C(8)-substituted monomers, dimers, and trimers were used. Dimers, trimers, and polymer were formed chemically through the β-β (2/6) positions by oxidative coupling using FeCl(3). A red shift of the absorbance and fluorescence is observed with addition of monomer units from monomer to polymer for C(8) dyes. The aza-BODIPY dye shows red-shifted absorbance and fluorescence compared with the C(8) analogue. Cyclic voltammetry shows one, two, and three one-electron waves on both reduction and oxidation for the monomer, dimer, and trimer, respectively, for the C(8) BODIPYs. The separation for the reduction peaks for the C(8) dimers is 0.12 V compared with 0.22 V for the oxidation, while the trimers show separations of 0.09 V between reduction peaks and 0.13 V for oxidation peaks. The larger separations between the second and third peaks, 0.25 V for the oxidation and 0.2 V for the reduction, are consistent with a larger energy to remove or add a third electron compared with the second one. The BODIPY polymer shows the presence of many sequential one-electron waves with a small separation. These results provide evidence for significant electronic interactions between different monomer units. The aza-BODIPY dye shows a reduction peak 0.8 V more positive compared to the C(8) compound. Aza-BODIPY dimer shows the appearance of four waves in dichloromethane. The separation between two consecutive waves is around 0.12 V for reduction compared with 0.2 V for oxidation, which is comparable with the results for the C(8) dyes. Electrogenerated chemiluminescence (ECL) of the different species was obtained, including weak ECL of the polymer.     

Subphthalocyanine-fused dimers and trimers: synthetic, electrochemical, and theoretical studies

Subphthalocyanine (SubPc)-fused dimers and trimers bearing fluorine, iodine, and thioether peripheral substituents were synthesized and characterized. Absorption spectroscopy and electrochemical studies revealed (i) that the substituents have a strong effect on the electronic properties of the macrocycles and (ii) that there is good communication between the subphthalocyaninic moieties within the oligomeric structures. Theoretical calculations at DFT/6-31G(d,p) computational level and electron density studies support the experimental findings. The frontier orbitals in the dimers and trimers were also shown to be significantly altered with respect to those of SubPcs as a consequence of the extension of the conjugation associated with symmetry breaking. Time-dependent density functional theory calculations reproduced the differences observed in the UV-vis spectra of the fused dimers and the monomeric SubPcs.