首页 | 本学科首页   官方微博 | 高级检索  
相似文献
 共查询到20条相似文献,搜索用时 406 毫秒
1.
Photoinduced electron transfer (PET) from Tyr21 to isoalloxazine (Iso) in the excited state (Iso*) is considered to be an initial step of the photosensing function of the blue-light sensing using flavin adenine dinucleotide (BLUF) component of the anti-repressor of the photosynthetic regulation (AppA). The PET mechanism was investigated via fluorescence dynamics of AppA and Kakitani and Mataga (KM) theories as well as by molecular dynamic (MD) simulation. The local structures of both the Y21F and W104F mutant AppAs around the Iso binding sites were quite different from those of the wild type (WT) AppA. The distances between Iso and Trp104 in Y21F, and between Iso and Tyr21 in W104F were shorter by 0.06 nm and 0.02 nm, respectively, compared to the WT. The frequency factor, ν0, in Tyr21 was 1.15-fold greater than that in Trp104. The critical distance between adiabatic and non-adiabatic PET processes, R0, was found to be very long in the AppA Tyr21. The large values of ν0 and R0 for Tyr21 of AppA compared to those in a non photosensing flavoprotein, FMN binding protein (FBP), were elucidated by hydrogen bond (H bond) chain between Tyr21 and Iso through Gln63. Interaction energies among Iso*, Trp104, Tyr21 and Gln63 in WT were calculated using the semi-empirical PM3 method. The amount of the transferred charge from Trp104 to Iso* in the WT exhibited a maximum at an interaction energy of around ?20 kcal/mol, but decreased as the interaction energy (absolute value) increased.  相似文献   

2.
The mechanism of photoinduced electron transfer (PET) from the aromatic amino acids (Trp32, Tyr35 and Trp106) to the excited flavin mononucleotide (FMN) in the wild type (WT) and four single amino acid substitution isomers (E13T, E13Q, W32A and W32Y) of FMN binding protein (FBP) from the Desulfovibrio vulgaris (Miyazaki F) were simultaneously analyzed (Method A) with the Marcus-Hush (MH) theory and Kakitani-Mataga (KM) theory using ultrafast fluorescence dynamics of these proteins. In addition, the PET mechanism of the WT, E13T and E13Q FBP systems (Method B) were also analyzed with both MH and KM theories. The KM theory could describe all of the experimental fluorescence decays better than the MH theory by both Methods A and B. The PET rates were found to largely depend on the electrostatic energies between photo-products, isoalloxazine (Iso) anion and the PET donor cations, and the other ionic groups, and hence on static dielectric constants. The dielectric constant (ε(0)(DA)) around the PET donors and acceptor was separately determined from those (ε(0)(j), j = WT, E13T, E13Q, W32Y and W32A) in the domain between the Iso anion or the donor cations and the other ionic groups in the proteins. The values of ε(0)(DA) were always lower than those of ε(0)(j), which is reasonable because no amino acid exists between the PET donors and acceptor in all systems. The values of the dielectric constants ε(0)(j) (j = WT, E13T and E13Q) were similar to those obtained previously from the analysis of the crystal structures and the average lifetimes of these FBP proteins. Energy gap law in the FBP systems was examined. An excellent parabolic function of the logarithms of the PET rates was obtained against the total free energy gap. The PET in these FBP isomers mostly took place in the so-called normal region, and partly in the inverted region.  相似文献   

3.
A series of diazenyl schiff bases have been synthesized by reaction of salicylaldehyde containing azo dyes with various substituted aniline derivatives in the presence of acetic acid as catalyst. The structures of diazenyl derivatives were determined by FTIR, UV–vis, 1H NMR, 13C NMR, CHN analysis, fluorimetric and mass spectroscopic studies. The synthesized derivatives were screened for their in vitro antimicrobial activity against various Gram-positive (S. aureus, B. subtilis, B. cereus), Gram-negative (S. typhi, S. enterica, E. coli, P. aeruginosa) bacterial and fungal (C. albicans, A. niger and A. fumigatus) strains, using cefadroxil (antibacterial) and fluconazole (antifungal) as standard drugs. The diazenyl schiff bases were also screened for their cytotoxicity against human colorectal carcinoma cell line (HCT-116) using 5-fluorouracil as standard drug by Sulforhodamine-B Stain (SRB) assay. The schiff bases exhibited significant activity toward both Gram-positive, Gram-negative bacterial and fungal strains. Most of the synthesized derivatives showed high activity against S. enterica. 4-((2,5-Dichlorophenyl)diazenyl)-2-((3-bromophenylimino)methyl)phenol (SBN-40) was found to be very active against S. aureus, B. cereus and E. coli, with MIC = 0.69 (µM/ml × 102). The compound 4-((2-bromophenyl)diazenyl)-2-((4-nitrophenylimino)methyl)phenol (SBN-13) possessed comparable activity (IC50 = 7.5 µg/ml) to the standard drug 5-fluorouracil (IC50 = 3.0 µg/ml) against human colorectal carcinoma cell line (HCT-116).  相似文献   

4.
A detail theoretical investigation on the structure and electronic properties of inorganic hexagonal units and their higher order derivatives comprising group III (B, Al and Ga) and V (N, P and As) elements is performed. A series of 45 clusters, formed by a linear combination of hydrogen saturated hexagonal motifs up to five units, (MY)2n+1H2n+4 (M = B, Al, Ga; Y = N, P, As; n = 1–5) are considered to look into their metal–insulator–semiconductor (MIS) behavior. It is evident from the present study that the arsenic doped group III hexagonal units clearly have a decisive role in forming semiconductor materials.  相似文献   

5.
Using first-principles technique, the crystal structure of cementite-type Fe3N is predicted. The average magnetic moment (Ms) of cementite-type Fe3N is also predicted as 1.4929 μB/atom. The Ms of Fe3N is bigger than that of Fe3C, but smaller than that of Fe3B. Fe Ms between two different Fe sites in Fe3N are different (2.0541 and 2.0139 μB), which indicates that Fe Ms are sensitive to the local short-range order in the cementite-type crystal. The Ms of B, C and N are ?0.3525, ?0.2474 and ?0.1102 μB/atom in Fe3X (X = B, C, N), respectively. The chemical bonds of Fe3X (X = B, C, N) take on metallicity, covalence, and ionicity. The ionicity of Fe3X (X = B, C, N) strengthens and the covalence of Fe–X weakens, going from Fe3B, Fe3C to Fe3N.  相似文献   

6.
Polyaniline nanotubes (PANI-NT) based film electrophoretically deposited onto indium–tin–oxide (ITO) coated glass plate has been utilized for covalent immobilization of lipase (LIP), via glutaraldehyde (Glu), for triglyceride detection using impedimetric technique. It is shown that fatty acid molecules produced during triglyceride hydrolysis result in change in charge transfer resistance (RCT) of PANI-NT film with varying triglyceride concentration. LIP/Glu/PANI-NT/ITO bioelectrode has linearity as 25–300 mg dL?1, sensitivity as 2.59 × 10?3 ?1 mg?1 dL, response time as 20 s and regression coefficient as 0.99. A low value of apparent Michaelis–Menten constant (~0.62 mM) indicates high enzyme affinity to tributyrin. The LIP/Glu/PANI-NT/ITO bioelectrode has been utilized to estimate triglyceride in serum samples.  相似文献   

7.
A simple, rapid high-performance liquid chromatographic (HPLC) method was developed for the simultaneous determination of glycolic acid, lactic acid, glicolide, lactide and ethyacetate in monomers for obtaining biopolymers. The separation was effected on the reversed-phase C18 column 250mm×4.6 mm with particle size 5 μ using a mobile phase mixture buffer and acetonitrile in a ratio 88:12 v/v and elution was isocratic at a flow-rate of 1.0 mL/min. The determinations were performed with a UV-Vis detector at 200 nm. The volume of the injected sample was 20 μL. Detection limits for acids and its dimers (glycolic acid, lactic acid, glicolide, lactide) and ethylacetate range between 82 and 182 ng/mL. The analytes are separated in 13 min. Recovery studies showed good results for all solutes (99–102%). The method is linear for all compounds over the concentration range tested, and shows good precision and accuracy, making it suitable for quantitation of acids and its dimers (glycolic acid, lactic acid, glicolide, lactide) and ethyl acetate in monomers.  相似文献   

8.
Integral molar enthalpies of mixing were determined by drop calorimetry for (Ag-Li) liquid alloys at two temperatures (1253 and 873) K. The integral molar enthalpies of mixing are negative in the entire range of concentrations. For the mole fraction of lithium XLi = 0.5664, minimum value of the integral enthalpy of mixing of at ΔHm = −11.679 kJ/mol was observed. For (Ag-Li) liquid alloys, between T = (873 and 1253) K no temperature dependence was observed. Ab initio molecular dynamics was used to simulate liquid phase structures at T = 873 K (Li-rich side) and at T = 1250 K (Ag-rich phase) for subsequent calculation of the vibrational energy, respectively. Our measured and calculated data were compared with literature data.  相似文献   

9.
Influenza virus of different subtypes H1N1, H2N2, H3N2 and H5N1 cause many human pandemic deaths and threatening the people worldwide. The Hemagglutinin (HA) protein mediates viral attachment to host receptors act as an attractive target. The sixteen natural compounds have been chosen to target the HA protein. Molecular docking studies have been performed to find binding affinity of the compounds. Out of the sixteen, three compounds CI, CII and CIII found to posses a higher binding affinity. The molecular dynamics (MD) simulation has been performed to study the structural, dynamical properties for the nine different complexes CI, CII, CIII bound with H1, H2, H3 proteins and the results were compared. The molecular mechanics Poission-Boltzmann surface area (MM-PBSA) method is used to compare the binding free energy, its different energy components and per residue binding contribution. The H1 subtype shows higher binding preference for all the curcumin derivatives than H2 and H3. The binding capability of protein subtypes with curcumin derivatives and the binding affinity of curcumin compounds are in the order H1 > H2 > H3 and CI > CII > CIII respectively. The two -O-CH3- groups present in the CI compound help to have strong binding with HA protein than CII and CIII. The van der Waals interaction energy plays a significant role for binding in all the complexes. The hydrogen bonding interactions were monitored throughout the MD simulation. The conserved region (153–155) and the helix region (193–194) of H1, H2, H3 protein subtypes are found to possess higher binding susceptibility for binding of the curcumin derivatives.  相似文献   

10.
《Fluid Phase Equilibria》2005,238(2):210-219
Data are reported on the phase behavior of hydrocarbon and semifluoroinated octyl ester benzoate dimers in CO2 to temperatures of 100 °C and pressures of 1 600 bar. The experimental data at 75 °C demonstrate that the non-fluorinated head-to-head (H–H) dimer dissolves in CO2 at ∼400 bar lower pressures than the non-fluorinated tail-to-tail (T–T) dimer. Even though partially fluorinating the octyl tails of the H–H and T–T dimers renders them soluble in CO2 at pressures near 200 bar, it still takes ∼40 bar more pressure to dissolve the fluorinated T–T dimer as compared to the H–H dimer. The difference in pressures needed to dissolve these dimers is attributed to steric constraints on the coplanarity of the benzene rings imposed by the H–H regiochemistry that do not exist with T–T dimers. Semi-empirical quantum mechanics calculations suggest that the H–H dimer has a twisted, non-coplanar conformation due to the steric effect of the octyl ester groups while the T–T dimer has a less twisted conformation. Steric hindrance in the H–H dimer reduces considerably resonance or conjugation between the π electrons of the aromatic groups which also reduces the dipole moments of the H–H dimers compared to those of the T–T dimers.  相似文献   

11.
Eight kinds of imidazolate-bridged copper(II) complexes were found to be classified into two categories from the magnetic properties. The crystal structures of [Cu(L)(μ-im)]n (Him = imidazole; L = nonane-4,6-dionate, 2,6-dimethylheptane-3,5-dionate) and [Cu(L)(μ-im)]4 (L = nonane-4,6-dionate, 1-phenylbutane-1,3-dionate) were determined, to reveal that they consist of polymeric chains and tetranuclear cycles, respectively. Note that the nonane-4,6-dionate derivative gave the two phases. The Bonner–Fisher model (a one-dimensional antiferromagnetic chain model) was plausibly applied to [Cu(L)(μ-im)]n for the best fit, while a square model was to [Cu(L)(μ-im)]4. The complexes with unknown crystal structures were also subjected to magnetic measurements, and the tetra- and polymeric structures could be clearly distinguished from each other by fitting the magnetic data to appropriate models. The exchange parameters were comparable for both series (2J/kB = ?78 to ?97 K) because the structurally common bridges Cu–N(eq)–N(eq)–Cu afford comparable magnitudes of couplings.  相似文献   

12.
Electrochemical scanning tunneling microscopy was used to study the structural evolution of adsorbed CO during preoxidation on Pt(111) modified with spontaneously deposited Ru. During the preoxidation process, a phase transition was observed from (2 × 2)-3CO-α to (√19 × √19)R23.4°-13CO via the transient structures (2 × 2)-3CO-β and (1 × 1)-CO. A comparison of these structural changes with those that occur on unmodified Pt(111) revealed that the presence of Ru resulted in higher populations of transient structures at lower potentials and a cathodic shift in the potential at which preoxidation is complete. These observations are discussed in terms of increased mobility of adsorbed CO in the presence of Ru.  相似文献   

13.
A nonmagnetic compound, [NO2BzPy][Cu(mnt)2] (mnt2? = maleonitriledithiolate; NO2BzPy+ = 1-(4′-nitrobenzyl)pyridinium), is isostructural with [NO2BzPy][Ni(mnt)2], which is a quasi-1D spin system and exhibits a spin-Peierls-like transition with J = 192 K in the gapless state and spin energy gap = 738 K in the dimerization state, respectively. Further, five nonmagnetic impurity doped compounds [NO2BzPy][CuxNi1?x(mnt)2] (x = 0.04–0.74) were prepared, and their crystal structures as well as magnetic properties were investigated. The nonmagnetic doping causes the suppression of the spin transition with an average rate of 139(13) K/percentage of dopant concentration, and the transition collapse is estimated at around x > 0.5.  相似文献   

14.
Phosphasilaallene Tip(Ph)Si = C = PMes* (Tip = 2,4,6-triisopropylphenyl, Mes* = 2,4,6-tri-tert-butylphenyl) and phosphagermaallene Mes2Ge = C = PMes* (Mes = 2,4,6-trimethylphenyl) have been obtained by dehalogenation of their corresponding dihalophosphametallapropenes > E(X)-C(X′) = P? by tert-butyllithium. They dimerize above ?40 °C by a cycloaddition involving two E = C double bonds or the E = C and the P = C double bonds but can be characterized at low temperature by trapping reactions and by low field shifts in 31P, 29Si and particularly 13C NMR for the sp carbon atom. Owing to a small increase in the steric hindrance, phosphagermaallene Tip(t-Bu)Ge = C = PMes* can be stabilized and isolated. The Ge = C double bond undergoes nearly quantitative [2 + 1] cycloadditions with chalcogens and [2 + 2] cycloadditions with aldehydes or ketones. The surprisingly stable lithiochlorosilane R(Cl2)Si-C(Li) = PMes* (R = 9-methylfluorenyl) behaves as a synthetic equivalent of the phosphasilaallene R(Cl)Si = C = PMes*. With two alkyl groups (t-Bu) on the germanium atom, the phosphagermaallene t-Bu2Ge = C = PMes* is not obtained but its formal dimers 1,3-digermacyclobutanes have been isolated.  相似文献   

15.
The reaction kinetics of 4,6-dinitrobenzofuroxan with five heterocyclic amines was investigated spectrophotometrically (UV–Vis) in acetonitrile at 20 °C. It was observed that the rate constants of these reactions increased as follows: 2-aminopyrimidine > 2-aminothiazole > 2-aminobenzothiazole > 5-amino-3,4-dimethylisoxazole > 2-amino-5-trifluoromethyl-1,3,4-thiadiazole. Further, second-order rate constants (k1) pertaining to the C–N and C–C bond forming step of these complexation processes fit to the three parameter equation log k (20 °C) = sN (N + E), allowing the determination of the nucleophilicity parameters (N) of the five heterocyclic amines. The heterocyclic amines were subsequently ranked on the comprehensive nucleophilicity scale defined by Mayr et al. (2003), providing a direct comparison of n-, π-, and σ-nucleophiles.  相似文献   

16.
We have modified our earlier technique for accurate PPMS heat capacity measurements on powdered samples by means of applying Wakefield grease or small copper strips in the sample preparation instead of using Apiezon N high-vacuum grease. For the Wakefield grease measurements, we put a small amount of Wakefield thermal compound in a copper cup instead of potting with Apiezon N, and the accuracy of measurements on powdered benzoic acid was determined to be ±1% and ±4% in the temperature ranges of 10 K < T < 280 K and 280 K < T < 300 K, respectively. The Wakefield grease was found to improve the accuracy somewhat but overall there was no noticeable improvement in the “grease region” above T = 220 K. To overcome the known shortcomings of using Apiezon N grease above 220 K, we have replaced the Apiezon N grease with small copper strips in the sample preparation to aid thermal conductivity, which results in a less time-intensive two-step technique for the PPMS heat capacity measurement but with an accuracy, based on measurements of benzoic acid, that is ±1% from T = (10 to 300) K and, more importantly, the elimination of the “grease problem”. As an additional test of the new technique, the heat capacity of powdered bulk rutile has been measured twice within the temperature range from (2 to 300) K using the PPMS, and its standard entropy at T = 298.15 K was calculated to be (50.39 ± 0.50) and (50.31 ± 0.50) J · K?1 · mol?1, which deviates 0.08% and ?0.08% from the measurement results of our low-temperature adiabatic and semi-adiabatic calorimeters, respectively. We recommend that this technique become the standard for accurate heat capacity measurements on insulating powdered samples using a PPMS system and the corresponding thermodynamic calculations.  相似文献   

17.
Raman spectrum of the meso tetraphenylporphine (TPP) deposited onto smooth copper surface as thin film were recorded in the region 200–1700 cm−1. To investigate the effect of meso-phenyl substitution rings on the vibrational spectrum of free base porphyrin, we calculated Raman and infrared (IR) spectra of the meso-tetraphenylporphine (TPP), meso tetramethylporphine (TMP), copper (II)porphine (CuPr) and free base porphine (FBP) at the B3LYP/6-311+G(d,p) level of the density functional theory (DFT). The observed Raman spectrum of the TPP is assigned based on the calculated its Raman spectrum in connection with the calculated spectra of the TMP, CuPr and FBP by taking into account of their corresponding vibrational motions of the Raman modes of frequencies. Results of the calculations clearly indicated that the meso tetraphenyl substitution rings are totally responsible for the observed Raman bands at ∼1593, 1234 and 1002 cm−1. The calculated and observed Raman spectra also suggested that the observed Raman band with a medium intense at 962 cm−1 might result from the surface plasmon effect. Furthermore, the observed Raman bands with medium intense at ∼334 and ∼201 cm−1 are as results of the dimerization or aggregation of the TPP or would be that related to intramolecular interaction. We also calculated IR spectra of these molecules at same level of the theory. To investigate the solvent effect on the vibrational spectrum of porphine, the Raman and IR spectra of the TPP and FBP are calculated in solution phase where water used as solvent. The results of these calculation indicated that there is no any significant effect on the vibrational spectrum of the TPP.  相似文献   

18.
N-Thioamide thiosemicarbazone derived of 2-chloro-4-hydroxy-benzaldehyde (R = H, HL1; R = Me, HL2 and R = Ph, HL3) have been prepared and their reaction with fac-[ReX(CO)3(CH3CN)2] (X = Br, Cl) in chloroform gave the adducts [ReX(CO)3(HL)] (1a X = Cl, R = H; 1a′ X = Br, R = H; 1b X = Cl, R = CH3; 1b′ X = Br, R = CH3; 1c X = Cl, R = Ph; 1c′ X = Br, R = Ph) in good yield. Complexes 1a′ and 1b’ were also obtained by the reaction of HL1 and HL3 with [ReBr(CO)5] in toluene.All the compounds have been characterized by elemental analysis, mass spectrometry (FAB), IR and 1H NMR spectroscopic methods. Moreover, the structures of HL2, HL3 and 1a·H2O were also established by X-ray diffraction. In 1a, the rhenium atom is coordinated by the sulphur and the azomethine nitrogen atoms, forming a five-membered chelate ring, as well as three carbonyl carbon and chloride atoms. The resulting coordination polyhedron can be described as a distorted octahedron.The study of the crystals obtained by slow evaporation of methanol and DMSO solutions of the adducts 1a′ and 1b, respectively, showed the formation of dimer structures based on rhenium(I) thiosemicarbazonates [Re2(L1)2(CO)6]·3H2O (2a)·3H2O and [Re2(L2)2(CO)6]·(CH3)2SO (2b)·2(CH3)2SO. Amounts of these thiosemicarbazonate complexes [Re2(L)2(CO)6] (2) were obtained by reaction of the corresponding free ligands with [ReCl(CO)5] in dry toluene.In 2a·3H2O and 2b·2(CH3)2SO the dimer structures are established by Re–S–Re bridges, where S is the thiolate sulphur from a N,S-bidentate thiosemicarbazonate ligand. In both structures the rhenium coordination sphere is similar; the dimers are in the same diamond Re2S2 face.  相似文献   

19.
The reaction of organoaluminum compounds containing O,C,O or N,C,N chelating (so called pincer) ligands [2,6-(YCH2)2C6H3]AliBu2 (Y = MeO 1, tBuO 2, Me2N 3) with R3SnOH (R = Ph or Me) gives tetraorganotin complexes [2,6-(YCH2)2C6H3]SnR3 (Y = MeO, R = Ph 4, Y = MeO, R = Me 5; Y = tBuO, R = Ph 6, Y = tBuO, R = Me 7; Y = Me2N, R = Ph 8, Y = Me2N, R = Me 9) as the result of migration of O,C,O or N,C,N pincer ligands from aluminum to tin atom. Reaction of 1 and 2 with (nBu3Sn)2O proceeded in similar fashion resulting in 10 and 11 ([2,6-(YCH2)2C6H3]SnnBu3, Y = MeO 10; Y = tBuO 11) in mixture with nBu3SniBu. The reaction 1 and 3 with 2 equiv. of Ph3SiOH followed another reaction path and ([2,6-(YCH2)2C6H3]Al(OSiPh3)2, Y = MeO 12, Me2N 13) were observed as the products of alkane elimination. The organotin derivatives 411 were characterized by the help of elemental analysis, ESI-MS technique, 1H, 13C, 119Sn NMR spectroscopy and in the case 6 and 8 by single crystal X-ray diffraction (XRD). Compounds 12 and 13 were identified using elemental analysis,1H, 13C, 29Si NMR and IR spectroscopy.  相似文献   

20.
The FTIR spectrum of symmetrical derivative of the tetraoxa[8]circulene, named para-dinaphthyleno-2,3,10,11-tetraundecyldiphenylenotetrafuran (p-2B2N4R, R = n-C11H23) has been recorded and interpreted using density functional theory (DFT) calculations for the model compounds p-2B2N4R (R = H, C2H5). The unsubstituted tetraoxa[8]circulene, namely para-dinaphthylenodiphenylenotetrafuran (p-2B2N) and para-dinaphthyleno-2,3,10,11-tetraethyldiphenylenotetrafuran (p-2B2N4R, R = C2H5) belong to the D2h and D2 symmetry point groups, respectively. The equilibrium molecular geometry, harmonic vibrational frequencies and infrared intensities have been calculated utilizing the DFT/B3LYP method with the 6–31G(d) basis set using the symmetry constraints. Comparison of the calculated vibrational spectra with the experimental data provides a reliable assignment of the observed bands in the FTIR spectra. The results of quantum-chemical calculations provide a complete interpretation of vibrational modes based on a good agreement with all details of the experimental spectra.  相似文献   

设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号