Total synthesis of pinnatoxins A and G and revision of the mode of action of pinnatoxin A

Pinnatoxins belong to an emerging class of potent marine toxins of the cyclic imine group. Detailed studies of their biological effects have been impeded by unavailability of the complex natural product from natural sources. This work describes the development of a robust, scalable synthetic sequence relying on a convergent strategy that delivered a sufficient amount of the toxin for detailed biological studies and its commercialization for use by other research groups and regulatory agencies. A central transformation in the synthesis is the highly diastereoselective Ireland-Claisen rearrangement of a complex α,α-disubstituted allylic ester based on a unique mode for stereoselective enolization through a chirality match between the substrate and the lithium amide base. With synthetic pinnatoxin A, a detailed study has been performed that provides conclusive evidence for its mode of action as a potent inhibitor of nicotinic acetylcholine receptors selective for the human neuronal α7 subtype. The comprehensive electrophysiological, biochemical, and computational studies support the view that the spiroimine subunit of pinnatoxins is critical for blocking nicotinic acetylcholine receptor subtypes, as evidenced by analyzing the effect of a synthetic analogue of pinnatoxin A containing an open form of the imine ring. Our studies have paved the way for the production of certified standards to be used for mass-spectrometric determination of these toxins in marine matrices and for the development of tests to detect these toxins in contaminated shellfish.     

Determination of the reference value of nitrogen mass fraction in the reference material of Polish soil

Ensuring a traceability and meaningful of a measurements is one of the most important stages of each analysis, each measurement. It is especially important for measurement of the environmental samples, like soil, which is a very complex matrix. A certified reference materials (CRMs) should be routinely used for this purpose. The paper discusses the procedure for preparation of the soil samples for certification as CRM. As for agricultural reasons there is a growing demand for CRMs regarding a nitrogen mass fraction in the Polish soil, we prepared such a material and established the reference value with associated measurement uncertainty. Homogeneity and stability of the material were shown to be appropriate for the intended purpose. The presented approach can also be used in a process of manufacture of a laboratory reference material, which can be used for a routine quality control.     

Regularities of formation of emboli of liquid polymer solutions in aqueous medium

Work on creating the basis for embolic compositions for the treatment of a wide range of pathologies of various organs was conducted. This basis is a solution of a biocompatible water-insoluble polymer in a biocompatible water-soluble solvent. Formation of the embolus in such an aqueous medium takes place in the transition of the solvent into the aqueous phase and the formation of a solid polymer clot occluding a blood vessel. Criteria for selection of the polymer and the solvent for the basis were formulated, and a number of polymers and solvents that meet these criteria were selected for further research. Research on the solubility of the selected polymers in solvents was carried out, and the rheoviscometric characteristics of polymer solutions, as well as parameters of solid emboli formation of polymer solutions in aqueous media, were found. The solution of cellulose acetate plasticized with OPADRY CA 500F190000 polyethylene glycol in dimethylsulfoxide with concentration of no less than 60 g/L was recognized as optimal for further studies.     

A Simple Method of the Determination of the Structural Heterogeneity of Microporous Solids

A new procedure for determining the structural heterogeneity of microporous solids is presented. Applying the concept of a general adsorption isotherm equation, a method for solving this equation for adsorption in micropores is developed, and the applicability of a new simple algorithm for determining the parameters of microporous structure of two commercial carbons is shown. Copyright 2001 Academic Press.     

Scaling analysis of coating of a plate or a fiber

The problem of coating a plate or a fiber through their withdrawal from a large reservoir was treated in the literature in various limiting cases. In the present paper, interpolation expressions are derived by scaling for Newtonian, Bingham, and viscoelastic fluids. The scaling analysis was also employed to explain the sharp increase in film thickness produced by inertia and the occurrence of a maximum thickness for an optimum velocity. It is also shown that, for a viscoelastic fluid, the film thickness tends to a finite value at very large withdrawal rates. An explanation is also provided for the existence of a maximum film thickness for an optimum surfactant concentration.     

Simulation of liquid cooling of an extruded sleeve plastic film

A mathematical model of a liquid cooling was considered for a tubular plastic film produced by extrusion down. The developed model allows for a preset film speed (extruder) and film parameters to determine a length of a cooling zone or for a preset length of the cooling zone calculation of maximum speed of the film with the preset parameters.     

Synthesis of the tricyclic core of aldingenin B by oxidative cyclo-ketalization of an alkyne-diol

The preparation and selenium-mediated cyclo-ketalization of an alkyne-diol is described as a model study for the synthesis of aldingenin B. The oxidative cyclization is a simplifying transformation for aldingenin B, as it provides a convenient method for generating the tricylic core of the natural product from a functionalized cyclohexane.     

Calculation of adiabatic polarization of atomic photofragments under the influence of long range quadrupole-quadrupole interactions

General equations for diagonalization of the quadrupole-quadrupole interaction matrix for diatomic molecules are presented. Eigenvalue and eigenvector solutions are tabulated for atoms with levels J < or = 2. The use of the eigenvector solutions for determination of adiabatic molecule-frame photofragment polarization is illustrated, and polarization parameters a and a are tabulated. Even if knowledge of the photofragment scattering matrix is limited, we illustrate how coherent polarization parameters a0(1) and a0(2) can be calculated from the tabulated adiabatic expansion coefficients, for example, by making use of available experimental data.     

Versatile synthesis and mechanism of activation of S-benzoxazolyl glycosides

As a part of a program for developing new efficient procedures for stereoselective glycosylation, a range of S-benzoxazolyl (SBox) glycosides have been synthesized. The mechanistic aspects of the SBox moiety activation for glycosylation via a variety of conceptually different pathways in the presence of thiophilic, electrophilic, or metal-based promoters have been investigated.     

Study of the mechanism of formation of transparent polyacrylonitrile

The kinetics of bulk polymerization of acrylonitrile, leading to a transparent polymer, was studied. The reaction was followed by a dilatometer specially designed for high degrees of conversion and for continuous supply of monomer during the reaction. The last stages of polymerization were followed by density determinations. It was found that the kinetic scheme did not show any irregularities, and that the major condition for obtaining a transparent polymer is a continuous supply of monomer to fill up the gaps formed by the contraction during the polymerization process.     

Kinetics of solubilization of n-decane and benzene by micellar solutions of sodium dodecyl sulfate

We observed the diminishing of single microscopic oil drops to study the kinetics of solubilization of n-decane and benzene by micellar solutions of sodium dodecyl sulfate (SDS). Each drop is located in a horizontal glass capillary of inner diameter 0.06 cm filled with a thermostated surfactant solution; the small vertical dimension of the cell prevents the appearance of uncontrollable thermal convections. The experiments show that the radius of an n-decane drop decreases linearly with time, whereas for benzene this dependence is nonlinear. To interpret the data, a kinetic model of solubilization is developed. It accounts for the diffusion and capturing of dissolved oil molecules by the surfactant micelles, as well as for the finite rate of oil dissolution at the oil-water interface. By processing the data, we determined the rate constant of solubilization for a given oil and surfactant. It turns out that the elementary act of catching a dissolved oil molecule by a surfactant micelle occurs under a barrier (rather than diffusion) control. The effective rate of solubilization is greater for the oil, which exhibits a higher equilibrium solubility in pure water (benzene), despite the lower value of the solubilization rate constant for this oil.     

Temperature dependence of the growth rate of spherulites

The spherulitic growth data that exist in the literature for a wide diversity of polymers have been analyzed according to various possible nucleation mechanisms. It is demonstrated that, if allowed a reasonable choice for the equilibrium melting temperature, no unbiased selection of a unique nucleation process can be made. Moreover, a set of universal parameters exists for each of the allowable nucleation processes which enables the data to be represented by a single straight line which encompasses all the polymers. The only quantities specific to a given polymer are the equilibrium melting temperature and the activation energy for transport. The magnitude of the latter quantity is shown to be dependent on the glass temperature of the polymer.     

Development of models for prediction of the antioxidant activity of derivatives of natural compounds

Antioxidants are important for maintaining the appropriate balance between oxidizing and reducing species in the body and thus preventing oxidative stress. Many natural compounds are being screened for their possible antioxidant activity. It was found that a mushroom pigment Norbadione A, which is a pulvinic acid derivative, shows an antioxidant activity; the same was found for other pulvinic acid derivatives and structurally related coumarines. Based on the results of in vitro studies performed on these compounds as a part of this study quantitative structure–activity relationship (QSAR) predictive models were constructed using multiple linear regression, counter-propagation artificial neural networks and support vector regression (SVR). The models have been developed in accordance with current QSAR guidelines, including the assessment of the models applicability domains. A new approach for the graphical evaluation of the applicability domain for SVR models is suggested. The developed models show sufficient predictive abilities for the screening of virtual libraries for new potential antioxidants.     

Linear relations for efficiency calibration of γ-spectrometric measurements of bulk samples

The self-attenuation correction factor is used to relate the efficiency for a sample with a given matrix to the efficiency for an ideal sample with identical geometry but negligible photon attenuation. A certain linear relation for the efficiency for a given sample as a function of the efficiencies for a number of subsamples into which the original sample can be decomposed is established and experimentally validated. This relation can be used also in the case when the sample and the subsamples have different matrices. In this way the efficiency for volume samples with arbitrary compositions and densities can be constructed on the basis of the efficiencies (independently measured) for a number of basic geometries. Also a possibility to check the consistency of efficiency calibrations carried out with different standard sources (with different matrices) is provided.     

Rapid screening of the aglycone specificity of glycosidases: applications to enzymatic synthesis of oligosaccharides.

BACKGROUND: Retaining glycosidases can catalyse glycosidic bond formation through transglycosylation from a donor sugar to an acceptor bound in the aglycone site. The aglycone specificity of a glycosidase is not easily determined, thereby complicating the choice of the most appropriate glycosidase for use as a catalyst for transglycosylation. We have developed a strategy to rapidly screen the aglycone specificity of a glycosidase and thereby determine which enzymes are best suited to catalyse specific transglycosylation reactions. RESULTS: The reactivation, or turnover, of a glycosidase trapped as a fluoroglycosyl-enzyme species is accelerated in the presence of a compound that productively binds to the aglycone site. This methodology was used to rapidly screen six glycosidases with 44 potential acceptor sugars. Validation of the screening strategy was demonstrated by the identification of products formed from a transglycosylation reaction with positively screened acceptors for four of the enzymes studied. CONCLUSIONS: The aglycone specificity of a glycosidase can be rapidly evaluated and requires only an appropriate fluorosugar inactivator, a substrate for assay of activity and a library of compounds for screening.     

Theory of depolarization of fluorescence in molecular pairs

Depolarization of fluorescence as a result of energy transfer is studied phenomenologically for a model pair of electronically coupled molecules. The usual rate equations are replaced by the Stochastic Liouville Equations and new radiative terms are included. An expression for the fluorescence polarization for all strengths of electronic coupling between the molecules is obtained. The inclusion of off-diagonal density matrix elements is essential for resolving a paradox arising in the Förster theory of depolarization. The calculation points the way toward using a previously untapped source of information on coherence in complex systems.     

Temperature dependence of the bulk crystallization rate of polymers

Data already existing in the literature for the overall crystallization kinetics of a variety of polymers have been analyzed according to different possible nucleation mechanisms. The conclusions reached are similar to those previously deduced from an examination of ata for spherulite growth rates. It is demonstrated that, if allowed a reasonable choice for the equilibrium melting temperature, no unbiased selection of a unique nucleation process can be made. Moreover, a set of universal parameters exists for each of the nucleation and growth processes considered which allows the data for all polymers to be represented by a single straight line. The only quantities that are unique to a given polymer are the equilibriun melting temperature and the activation energy for transport.     

The mechanism of reequilibration of solids in the presence of a fluid phase

The preservation of morphology (pseudomorphism) and crystal structure during the transformation of one solid phase to another is regularly used as a criterion for a solid-state mechanism, even when there is a fluid phase present. However, a coupled dissolution-reprecipitation mechanism also preserves the morphology and transfers crystallographic information from parent to product by epitaxial nucleation. The generation of porosity in the product phase is a necessary condition for such a mechanism as it allows fluid to maintain contact with a reaction interface which moves through the parent phase from the original surface. We propose that interface-coupled dissolution-reprecipitation is a general mechanism for reequilibration of solids in the presence of a fluid phase.     

Effect of interparticle interactions on the rate of injection of charge carriers into electroactive polymer films

A phenomenological approach is used for deriving a difference equation for the density of reduced sites in films of electroactive polymers with conspicuous interparticle interactions. The approach involves simultaneous application of the lattice methods and Broensted’s rule. This leads to generalization of equations for the surface layer that are known in theory of surface tension for nonelectrolytic solutions. Together with the Poisson equation for electric potential, the derived relationships make a complicated system of differential equations. Nevertheless, it can be solved by iterative methods. In the framework of this approach, expressions for the rates of injection of charge carriers into polymer films are obtained. Within a first approximation with regard to allowance for the forces of short-range interactions, their influence on the rates of injection of electrons and protons into a film is discussed.     

The collision-induced polarizability of a pair of hydrogen molecules

Collision-induced light scattering, impulsive stimulated scattering, and subpicosecond-induced birefringence all depend on the transient changes Deltaalpha in molecular polarizabilities that occur when molecules collide. Ab initio results for Deltaalpha are needed to permit comparisons with accurate experimental results for these spectra and for refractive index virial coefficients and dielectric virial coefficients. In this work, we provide results for Deltaalpha for a pair of hydrogen molecules, treated at CCSD(T) level, with an aug-cc-pV5Z (spdf) basis set. Our values replace the best previous ab initio results for the variation of Deltaalpha with intermolecular separation, the self-consistent-field results obtained by Bounds [Mol. Phys. 38, 2099 (1979)] with a relatively small (3s2p) basis set for H2. For the six geometrical configurations studied by Bounds, the inclusion of correlation and improvements in the basis tend to increase both the trace Deltaalpha(0)0 and the anisotropy Deltaalpha2m of the pair polarizability. The change in the anisotropy is relatively small, but our values for the trace differ by factors of 2 or more from Bounds' results. For use in computing experimental line shapes, intensities, and virial coefficients, we have calculated Deltaalpha for 18 different relative orientations of a pair of H2 molecules, with the intermolecular separation R ranging from 2 a.u. (3 a.u. for a linear pair) to 10 a.u. The H2 bond length is fixed at the vibrationally averaged internuclear separation in the ground state r=1.449 a.u. Our results agree well with the CCSD(T) results for Deltaalpha obtained by Maroulis [J. Phys. Chem. A 104, 4772 (2000)] for two pair configurations of H2...H2 (linear and T-shaped) at a fixed internuclear distance of R=6.5 a.u. in a [6s4p1d] basis. As the intermolecular distance increases (for R>or=8 a.u.), the spherical-tensor components of Deltaalpha converge to the results from a long-range model that includes dipole-induced-dipole (DID) interactions, higher-multipole induction, nonuniformity of the local field, hyperpolarization, and van der Waals dispersion. Deviations from the first-order DID model are still evident for R between 8 and 10 a.u. in most orientations of the pair. At shorter range, overlap damping, exchange, and orbital distortion reduce both Deltaalpha0(0) and Deltaalpha(2)0 below their long-range limiting forms.