Review: Inverse coordination. Inorganic open and cyclic nitrogen heteroatom molecules as coordination centers. A survey of molecular topologies

This review is a follow up to a previous article [I. Haiduc J. Coord. Chem. (2018) doi:10.1080/00958972.2018.1515429.] which illustrated the concept of inverse coordination with structures in which the coordination center is nitrogen alone (mono- and poly-nitrogen moieties). Here the open and cyclic heteroatom molecules with inorganic skeletons and nitrogen donor sites are presented. Organic nitrogen heterocycles will be treated in a further review.

     

A novel self-assembly based on double-layer zinc porphyrin sensitizers in supramolecular solar cell

Two new self-assemblies based on zinc porphyrin dyes ZnPx-ZnPA (x?=?1, 2) were synthesized and used for dye-sensitized solar cells. Capping layer dyes consist of zinc porphyrin (ZnP) as core unit and carbazole (P1), phenothiazine (P2) as electron-donating group. The dye ZnPA contains carboxylic group as an anchor porphyrin with upper dyes (denoted as ZnP1 and ZnP2) formed dyads by coordination bonds of Zn-to-ligand self-assembled devices. The assembly modes were also verified by transmission electron microscopy (TEM). The influence of the upper porphyrins on molecular structure as well as photovoltaic performance was investigated via photophysical and electrochemical studies and calculations. With addition of the phenothiazine unit, the ZnP2-ZnPA possesses better light-harvesting capability with a significantly red-shifted Q-band. The photoelectrochemical efficiencies for ZnP2-ZnPA are better than those of ZnP1-ZnPA ascribed to larger J_sc and V_oc.

     

Two new triterpenoids from Gardenia jasminoides fruits

A new cycloartane triterpenoid, named gardenolic acid C (1), a new ursane triterpenoid, named 3β,16β,21β,23,24-pentahydroxy urs-12,18,20-trien-28-oic acid γ-lactone (2), together with three know triterpenoids, gardenolic acid A (3), gardenolic acid B (4), and 3α,16β,23,24-tetrahydroxy-28-nor-ursane-12,17,19,21-tetraen (5) were isolated from the fruits of Gardenia jasminoides Ellis. The structures of these compounds were elucidated by analyses of spectroscopic data. All isolates were evaluated for their neuroprotective effects in vitro.

     

Microbial transformation of isocoronarin D by Cunninghamella echinulata NRRL 1386

The diterpene isocoronarin D (1) is a bioactive major constituent of labdane diterpene from the aerial parts of Curcuma comosa Roxb. (Zingiberaceae), the Thai medicinal plant. Microbial transformation of 1 was performed by the fungus Cunninghamella echinulata NRRL 1386 to yield three new metabolites, 3β-hydroxyisocoronarin D (2), 6α-hydroxyisocoronarin D (3) and 3β,7α-dihydroxyisocoronarin D (4). The structures of the new compounds were elucidated by spectroscopic techniques.

     

Assembly of polyoxometalate-templated metal-organic framework with effective peroxidase-like catalytic activity

A new polyoxometalate (POM)-templated 3-D copper(II)-triazole framework [Cu₁₀(trz)₁₀(OH)₆(Cl)₄][H₃PW₁₂O₄₀]·2H₂O (trz = 1,2,3-triazole) has been synthesized and characterized by single crystal X-ray diffraction and other routine methods. The 3-D POM/copper(II)-triazole hybrid framework with a 1-D channel possesses a pcu topology under the template of bulk Keggin-type phosphotungstate. As a new kind of peroxidase mimetic, the new compound effectively catalyzed oxidation of 3,3′,5,5′-tetramethylbenzidine (TMB) in the presence of H₂O₂. The electrostatic interactions and hydrogen bonds/π-π stacking interactions among TMB, trz, and phosphotungstate are responsible for the enhancement of peroxidase-like activity. In addition, application for colorimetric sensing of H₂O₂ is also explored; the new compound exhibits a wide linear range (1–80?μM), low detection limit (0.21?μM), and fast response (2?min).

     

MgFe2O4@SiO2-PrNH2/Pd/bimenthonoxime core-shell magnetic nanoparticles as a recyclable green catalyst for heterogeneous Suzuki cross-coupling in aqueous ethanol

Magnetically recoverable MgFe₂O₄@SiO₂-PrNH₂/Pd/bimenthonoxime nanoparticles were prepared and characterized by SEM, EDX, TEM, XRD, XPS, ICP, VSM and FT-IR. The nanocatalyst was used for Suzuki cross-coupling in aqueous ethanol media, and the corresponding biaryl derivatives were synthesized within short reaction time. The catalyst was separated by an external magnet and reused several times.

     

Four Ni(II), Co(III), Cd(II) complexes based on 5-(pyrazol-1-yl)nicotinic acid: synthesis,X-ray single crystal structure,in vitro cytotoxicity,apoptosis and molecular docking studies

We have developed complexes [Ni₂(L)₂(H₂O)₄]_n (1), [Co₂(L)₂(H₂O)₄]_n (2), [Cd₂(L)₂(H₂O)₂Cl₂]n (3) and [Cd₂(L)₂(H₂O)₂]_n (4), where HL = 5-(pyrazol-1-yl) nicotinic acid. All complexes were characterized by elemental analysis, IR spectroscopy and single crystal X-ray diffraction, showing monoclinic crystal lattice with space group P2₁/c (1), P2₁/c (2), P2₁/c (3), and triclinic crystal lattice with space group P-1 (4), separately. In vitro antitumor screening (MTT method) revealed that 3 exhibited better inhibitory activities than the commercial anticancer drug cisplatin against HeLa tumor cell lines, with IC50 values 9?±?2. The bindings of these complexes with Fish Sperm DNA were measured by electronic absorption spectra and fluorescence spectroscopy, showing K_sq 0.1867 (1), 0.1589 (2), 0.2332 (3), and 0.1411 (4), with the binding affinities ranked 3?>?1 > 2?>?4. The experimental result showed that these complexes could bind DNA via intercalation. The ability of 1–4 to cleave the pBR322 plasmid DNA was demonstrated by gel electrophoresis assay. The experiment verified that these complexes could induce DNA damage. In addition, flow cytometric analysis showed that 1–4 induced apoptosis of HeLa tumor cell lines; as time increases, the apoptotic impact becomes increasingly significant. The potential of 1–4 as anticancer agents were examined using molecular docking of the complexes with DNA.

     

Biochemical relevance of Cr(III) complexes of isoniazid: synthesis,characterization, DFT,antibacterial screening,antioxidant activity and glucose-lowering effect in STZ-induced diabetic rats

Molecular mechanism suggests that the incorporation of an antioxidant organic moiety to chromium will be a sound strategy for the synthesis of safer and more effective hypoglycemic compounds. Two Schiff base ligands were derived by condensation of isonicotinyl hydrazide with salicylaldehyde/o-hydroxyacetophenone which further yield four novel chromium(III) complexes of types [Cr(L)Cl₂(H₂O)] and [Cr(L)₂]Cl. The ligands and complexes were characterized by analytical and spectroscopic techniques. DFT study at the basic set B3LYP and TD-SCF/6-311-G level was employed to confirm the geometry of the investigated compounds. Ligands were tested for their antioxidant activity and exhibited good antioxidant activity. Assessment of insulin-like activity of the complexes was initially performed in vitro by measuring the inhibition of α-amylase. The complex with highest in vitro activity was investigated for in vivo antidiabetic activity on the model of STZ-induced diabetic rats, which demonstrated that complex 4 significantly lowers the blood glucose level in rats. Toxicity level and antioxidant activity of the complex were also tested, which exhibit good tolerance level and antioxidant activity. Histological analysis of the pancreas of animals under investigation reveals the good condition of the pancreas treated with the complex. Ligands and complexes were also tested for antibacterial activity against Escherichia coli.

     

New aurone epoxide and auronolignan from the heartwood of Cotinus coggygria Scop

New aurone epoxide, 2,10-oxy-10-methoxysulfuretin (14), and new auronolignan (15), named cotinignan A, were isolated by silica gel column and semipreparative HPLC chromatography from the methylene chloride/methanol extract of Cotinus coggygria Scop. heartwood. In addition, thirteen known secondary metabolites namely sulfuretin, 2,3-trans-fustin, fisetin, butin, butein, taxifolin, eriodictyol, 3',5,5',7–tetrahydroxyflavanone, 3',4',7-trihydroxyflavone, 3-O-methyl-2,3-trans-fustin, 3-O-galloyl-2,3-trans-fustin, β-resorcylic acid and 3-O-β-sitosterol glucoside were isolated as well. Their structures were elucidated by 1D and 2D NMR, HR-ESI-MS, IR and UV. Ten out of eleven isolated flavonoids possess 7, 3' and 4' hydroxy groups. These structural features could be considered as chemotaxonomic characteristic of flavonoids from C. coggygria. Cotinignan A (15) represents new subclass of secondary metabolites - auronolignans.

     

ZnO–Bentonite nanocomposite: an efficient catalyst for discharge of dyes,phenol and Cr(VI) from water

The present work focused on application of ZnO-NPs@bentonite, as a catalyst, for disposal of different pollutants such as dyes, phenol compounds and Cr(VI) ions from water. The prepared ZnO–bentonite nanocomposite was characterized by using FT-IR, X-ray powder diffraction, and Scanning electron microscopy analysis. The results showed that the amount of zinc oxide influenced the catalytic performance of ZnO–bentonite nanocomposite. Small amounts of zinc oxide on bentonite have a positive effect whereas increase in weight ratios has a negative effect.

     

Dy(III) complexes of metformin Schiff-bases as glucose probe: synthesis,spectral, and thermal properties

Complexes of Dy³⁺ with metformin-Schiff-bases of salicylaldehyde (HL¹); 2,3-dihydroxybenzaldehyde (H₂L²); 2,4-dihydroxybenzaldehyde (H₂L³); 2,5-dihydroxybenzaldehyde (H₂L⁴); 3,4-dihydroxybenzaldehyde (H₂L⁵); and 2-hydroxynaphthaldehyde (HL⁶) were synthesized by template reactions. The new compounds were characterized through elemental analysis, conductivity and magnetic moment measurements, IR, UV–vis, fluorescence, GC–MS, and XRD spectroscopies. The complexes are seven coordinate with formulas [DyL^1–4,6(NO₃)₂(H₂O)₂]·nH₂O where n?=?2, 2½, 4, 2, 2 and [DyL⁵(NO₃)(H₂O)₄]·2H₂O. TGA, DTG, and DTA analyses confirmed the suggested stereochemistry and subsequently the proposed mechanism of thermal decomposition. Kinetic and thermodynamic parameters were calculated for the second decomposition step. Thus, we report the ability of using the prepared complexes in the detection of glucose at physiological conditions using UV–vis and fluorescence spectroscopy as well as viscosity measurements, where the association constants were calculated.

     

A hydroxyquinoline-appended ruthenium(II)-polypyridyl complex that induces and stabilizes G-quadruplex DNA

A polypyridyl ruthenium(II) complex with hydroxyquinoline-derived ligand has been synthesized and characterized. The ability to act as telomeric quadruplex inducer and stabilizer, and quadruplex-binding properties of the complex have been evaluated by absorption and emission analyses, fluorescent intercalator displacement (FID) titrations, circular dichroism (CD) spectroscopy, polymerase chain reaction (PCR) stop assay, color reaction studies, fluorescence resonance energy transfer (FRET) melting assay, Job plot, and molecular modeling. Observations revealed that the complex could well induce and stabilize the formation of antiparallel G-quadruplex of telomeric DNA in the presence or absence of metal cations, and showed superior G-quadruplex selectivity over duplex DNA with remarkable ΔT_m value of 18.0?°C even at 50-fold excessive supplies of calf thymus (ct) DNA. The complex exhibited high interaction affinity of 2.56?×?10⁶ M^?1 with G-quadruplex DNA and evident luminescence enhancements of 3.1 and 4.2 times for quadruplex binding in Na⁺ and K⁺ buffer, respectively. In addition, the 1:1 [quadruplex]/[complex] binding mode ratio was determined. The results suggest that the complex can be developed as potential anticancer reagent through binding and stabilization of G-quadruplex DNA.

     

Gas chromatography tandem mass spectrometry for the screening of adulterants in seized captagon™ tablets

Background: Amphetamine type stimulants (ATS) are the second most popular illegal drugs used worldwide, after cannabis. The production of ATS has increased across the world, including the Middle East. Fenethylline (Captagon?), amphetamine derivative, sold as a street drug usually contains several adulterants and diluents. In Saudi Arabia, like other countries, samples of illicit ATS are submitted to laboratories to test for the adulterated compounds.

Objective: The objective of the proposed study was to apply gas chromatography/mass spectrometry (GC/MS) for fenethylline profiling of seized samples collected from the Saudi market (n?=?55).

Methodology: The GC/MS analysis was performed on a general purpose column (30?m?×?0.25?mm i.d) coated with 0.25?µm cross bond, 5% diphenyl dimethyl polysiloxane (Rtx-5MS). The mass was operated in the electron impact mode.

Results and discussion: Analyzed samples gave positive results for amphetamine in the concentration range between 1.35% and 37.32% of the powder, caffeine in the range between 22.74 and 44.92%, in addition to different concentrations of levoglucosenone, theophylline, D-allose, lidocaine, methamphetamine, dextromethorphan, and other adulterants. Finally, the presence of other substances in fenethylline street samples could result in intoxication. This significantly contributes to the potential risk of drug addiction among public.     

Crystallographic and DFT studies on host-guest complexes consisting of zinc bisporphyrinates and 1-phenylethylamine

We have investigated the chirality transfer from 1-phenylethylamine to a 5-amino-1,3-phthalic acid diamide-linked zinc bisporphyrinate through crystallographic and DFT studies. When the hosts were mixed with optically pure 1-phenylethylamine, CD showed moderate signals in the Soret band region. Single crystals of the corresponding 1:1 and 1:2 host-guest complexes were obtained. We present the first crystallographic structure of a 1:2 host-guest complex consisting of a bisporphyrin host and chiral monoamine guests. The structure reveals that the host-guest interactions are different for two guest molecules. The first guest is involved in a hydrogen bond and π-π interactions, while the second one is only involved in π-π interactions, which has not been observed in previous studies. The corresponding chirality transfer mechanism was also rationalized by DFT calculations.

     

Pd(0) nanoparticles immobilized on multinitrogen functionalized halloysite for promoting Sonogashira reaction: studying the role of the number of surface nitrogens in catalytic performance

Halloysite nanoclay, Hal, was amine-functionalized and subsequently reacted with 2,4,6-trichloro-1,3,5-triazine, TCT, and ethylenediamine, EDA, to provide multinitrogen containing functionality on the surface of Hal. The resulting surface-modified Hal, Hal-2N-TCT-EDA, was then used for immobilization of Pd nanoparticles and affording a heterogeneous catalyst, Pd@Hal-2N-TCT-EDA, with utility for copper and ligand-free Sonogashira coupling of alkynes and aryl halides. The results established the efficiency of this protocol in terms of product yield, ecofriendly nature, and reaction time. Study of the reusability of the catalyst confirmed that the catalyst could be recovered and recycled up to seven times with slight loss of catalytic activity and Pd leaching, indicating the efficiency of Hal-2N-TCT-EDA for embedding Pd nanoparticles. To elucidate the role of the number of surface nitrogens on the catalytic performance, the catalytic activity, and recyclability of the catalyst was compared with those of Hal-2N and Hal-2N-TCT. It was found that more surface nitrogen atoms gave higher loading of Pd and lower Pd leaching. This result confirms the contribution of surface nitrogens to anchor the Pd species and suppress leaching.

     

HPTLC coupled to ESI-Tandem MS for identifying phospholipids associated to membrane proteins in photosynthetic purple bacteria

High-performance thin-layer chromatography (HPTLC)-densitometry was directly combined with electrospray (ESI) tandem mass spectrometry for obtaining rapid and relevant structural identification of phospholipids (PL) species associated to membrane proteins (MP), in non-sulfur, purple bacteria having photosynthetic activity. Thus, species belonging to phosphatidylcholines (PC), phosphatidylethanolamines (PE), cardiolipins (CL) and phosphatidylglycerols (PG) associated to MP were investigated in bacterial membrane extracts from Rhodobacter (Rb.) blasticus, Rhodospirillum (R.) rubrum and Rhodobaca (Rbc.) bogoriensis, as well as those which are bound to a purified MP-photosynthetic complex from Rbc. bogoriensis.

PL-classes were separated using a 7-step gradient-solvent sequence with a previous acid plate preconditioning, using Automated Multiple Development. Band zones of the plate corresponding to PL classes were selected to ensure their direct transfer to ion-trap MS equipment through an elution-based interface.

Under the studied conditions, ESI⁺-MS spectra of PC and CL mostly showed sodium adducts ([M?+?Na]⁺) and [M-2H?+?3Na]⁺, respectively, when recorded from the plate. The respective sodium adducts were fragmented in the ion-trap, and sodium remained as the charge of the fragment ions, thus being useful for their structural identification through MS/MS. ESI^--MS and MS/MS spectra of CL were also obtained as [M-2H]^2?, as well as those of PE and PG species as [M-H]^- and [M]^?, respectively.

In this way, relative composition profiles of each studied PL-class by ESI-MS, and further identification of individual PL and the molecular species belonging to each of them by MS/MS were obtained.     

Stereoselective Synthesis of (Z)-1-Benzhydryl-4-cinnamylpiperazines via the Wittig Reaction

A synthetic method of producing (E)- and (Z)-isomers of 1-benzhydryl-4-cinnamylpiperazines in a specific ratio from corresponding benzhydrylpiperazine is described. Of the three compounds synthesized (5a–c), the ratio of E/Z-isomers remained around 15:85. The key intermediates, 1-benzhydryl-4-(2,2-dimethoxyethyl)piperazine derivatives (3a–c), were prepared by nucleophilic substitution reaction of benzhydrylpiperazines (2a–c) with chloroacetaldehyde dimethylacetal in good yield (up to 88%). Hydrolysis of 3a–c gave the corresponding aldehydes 4a–c, which when subjected to the Wittig reaction followed by column purification to afford 1a–c (E-isomers) and 6a–c (Z-isomers) in pure form. The isolated compounds were characterized by NMR and mass spectral analysis.

[Supplementary materials are available for this article. Go to the publisher's online edition of Synthetic Communications® for the following free supplemental resource(s): Full experimental and spectral details.]     

A kinetic and mechanistic study of dinuclear Pt(II) 2,2′:6′,2″-terpyridine compounds bridged with polyethyleneglycol ether flexible linkers

A series of dinuclear Pt(II) complexes bridged with polyethyleneglycol ether of the type [ClPt(tpy)O(CH₂CH₂O)_n(tpy)PtCl]Cl₂ where n = 1 (Ptdteg), 2 (Ptdtdeg), 3 (Ptdtteg), 4 (Ptdttteg), and linker-free complex, (Ptdt) (where tpy = 2,2′:6′,2″-terpyridine), were synthesized and characterized to investigate the role of bridging polyethyleneglycol ether linker on the substitution reactivity of dinuclear Pt(II) complexes. Substitution reactions were studied using thiourea nucleophiles, viz. thiourea (TU), 1,3-dimethyl-2-thiourea (DMTU), 1,1,3,3-tetramethyl-2-thiourea (TMTU) under pseudo-first-order conditions as a function of concentration and temperature by conventional stopped-flow reaction analyzer. The reactions gave single exponential fits following the rate law k_obs = k₂[Nu]. Introduction of polyethyleneglycol ether linker decreases the electrophilicity of the platinum center and the whole complex. The results obtained indicate that the rate of substitution is controlled by both electronic and steric hindrance which increases with the length of the linker. Experimental results are supported by density functional theory calculations and structures obtained at B3LYP/LANL2DZ level. The order of the reactivity of the nucleophiles is TU > DMTU > TMTU. The magnitude and the size of the enthalpy of activation and entropy of activation support an associative mode of mechanism, where bond formation in the transition state is favored.     

Development of new and robust LC-MS method for simultaneous quantification of polyphenols from Sambucus ebulus fruits

A new and simple LC-MS method for analysis of flavonoids from Sambucus ebulus berry extracts was developed and validated. Successfully were quantitated seven polyphenols: epicatechin, epigallocatechin gallate, rutin, resveratrol, myricetin, quercetin, and kaempferol.

Two detectors, working in parallel, were used: photodiode-array and single quadrupole mass-detector. The mass detection was used for identification and quantification of the analytes, while the diode-array detector was as confirmation tool. The following m/z were tracked: 457.15 (epigallocatechin gallate); 289.06 (epicatechin); 609.13 (rutin); 227.05 (resveratrol); 317.0 (myricetin); 301.02 (quercetin); 285.02 (kaempferol). For optimization the chromatographic separation three wavelengths 205?nm, 305?nm, 272?nm were monitored. The method was capable to detect in one run compounds with no UV or fluorescence chromophore and with very similar structures, such as plant polyphenols. The linearity was from 0.05?mg/L to 50?mg/L (R² 0.9962–0.9987). The recoveries for all tested analytes were between 81.6% and 104.7%.

The method was applied for analysis of crude extract of Sambucus ebulus ripe fruits. Three major polyphenols – epicatechin (0.84?mg/100gFW), quercetin (0.15?mg/100gFW) and kaempferol (0.05?mg/100gFW) were identified and quantified.

The proposed method could be successfully used for routine analysis of epigallocatechin gallate, epicatechin, rutin, resveratrol, myricetin, quercetin, and kaempferol in Sambucus ebulus extracts.